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<prev • 41 results • page 1 of 2 • next >
3
votes
2
answers
120
views
2
answers
Bowtie2: gtf file - annotation file
gtf bowtie2 aligner written 21 days ago by KVC_bioinfo • 110 • updated 21 days ago by Devon Ryan ♦ 71k
0
votes
0
answers
202
views
0
answers
Aligner to work with PAN genomes and short reads
genome aligner pan written 9 weeks ago by deepti1rao • 0
4
votes
1
answer
289
views
1
answer
To screen for a good aligner
aligner blast written 9 weeks ago by deepti1rao • 0 • updated 9 weeks ago by Macspider • 1.5k
3
votes
1
answer
286
views
1
answer
INDEL left alignment in bam and vcf
indel aligner bowtie bwa blasr written 8 months ago by mark.rose • 10 • updated 8 months ago by Brian Bushnell ♦ 14k
6
votes
1
answer
738
views
1
answer
Problem installing STAR on Mac OSX
installation aligner star written 11 months ago by cristian • 80 • updated 11 months ago by khericlim • 340
2
votes
0
answers
838
views
0
answers
Annoying STAR aligner problem
aligner star written 14 months ago by Biogeek • 240
0
votes
1
answer
319
views
1
answer
HTS protein to protein aligner or DNA to Protein aligner
alignment parameters aligner scoring matrix written 14 months ago by swttalyan • 10 • updated 14 months ago by Asaf ♦ 4.5k
1
vote
1
answer
595
views
1
answer
Very significant difference in gene counts by different aligner
aligner rna-seq written 20 months ago by colonppg • 40
1
vote
0
answers
1.4k
views
0
answers
output SAM file from STAR aligner looks incomplete
aligner alignment star dnaseq written 22 months ago by nalandaatmi • 40
1
vote
1
answer
2.0k
views
1
answer
Mapping mate-pairs reads with bowtie2
bowtie2 mate-pair aligner written 2.4 years ago by Biomonika (Noolean) ♦ 3.0k • updated 2.4 years ago by arnstrm • 1.6k
6
votes
2
answers
1.6k
views
2
answers
Which Aligner Would You Recommend For Transcriptome Assembly
aligner transcriptome assembly written 4.4 years ago by Nicolas Rosewick • 5.4k • updated 3.4 years ago by mikhail.shugay ♦ 3.2k
1
vote
1
answer
1.3k
views
1
answer
Different Results Of Tophat And Bowtie2
alignment tophat bowtie2 mapping aligner tophat2 written 3.6 years ago by Mohammad Reza Bakhtiarizadeh • 250 • updated 3.6 years ago by Neilfws ♦ 47k
4
votes
2
answers
2.8k
views
6 follow
2
answers
Which Short Read Mappers Can Handle Overlapping Paired-End Reads?
short aligner paired written 6.7 years ago by Ryan Thompson • 3.3k • updated 3.9 years ago by Adrian Pelin • 2.0k
96
votes
8
answers
22k
views
30 follow
8
answers
What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 7.5 years ago by Pierre Lindenbaum ♦ 99k • updated 4.0 years ago by Biostar ♦♦ 20
6
votes
2
answers
1.4k
views
2
answers
Aligning Short Reads To Homologous Sequences?
short aligner transcriptome written 6.3 years ago by Goldbear • 130 • updated 4.0 years ago by rob234king • 530
0
votes
1
answer
891
views
1
answer
Shrimp2 On Galaxy Instance
aligner written 4.2 years ago by kanwarjag • 790 • updated 4.1 years ago by Matt Shirley ♦ 7.9k
0
votes
1
answer
847
views
1
answer
A Map(?) Of Sequence Alignment
sequence aligner alignment written 4.4 years ago by Karol Pal jr. • 20 • updated 4.4 years ago by zam.iqbal.genome • 1.6k
1
vote
1
answer
1.4k
views
1
answer
Shrimp Uniquely Aligned Reads
aligner samtools rna-seq written 4.5 years ago by vj • 310 • updated 4.5 years ago by Ashutosh Pandey ♦ 11k
17
votes
6
answers
2.6k
views
7 follow
6
answers
Need Recommendations For Aligning Longer (2X250Bp) Reads
aligner written 5.0 years ago by Richard • 500 • updated 4.6 years ago by kanwarjag • 790
2
votes
1
answer
1.5k
views
1
answer
Mapping 454 Rnaseq To A Genome
aligner rna-seq written 4.7 years ago by Darked89 ♦ 4.1k • updated 4.6 years ago by Rohit • 1.3k
14
votes
1
answer
1.2k
views
1
answer
Aligner That Preserves Case?
aligner bioperl msa written 4.7 years ago by Fwip • 480 • updated 4.7 years ago by Manu Prestat ♦ 3.8k
9
votes
1
answer
1.5k
views
1
answer
Mate Pair Alignment Summary
illumina aligner written 5.2 years ago by Richard • 500 • updated 5.2 years ago by Rm ♦ 7.5k
7
votes
3
answers
5.9k
views
9 follow
3
answers
Aligning Reads From Small Rna-Seq Onto Human Genome
next-gen small sequencing short aligner alignment rna written 5.6 years ago by Leszek ♦ 3.8k • updated 5.6 years ago by Vikas Bansal • 2.3k
6
votes
3
answers
2.5k
views
3
answers
Ngs: How Many Reads Should Be Expected To Map To The Reference Sequence
short aligner next-gen sequencing written 7.5 years ago by Allpowerde • 1.2k • updated 5.7 years ago by Darked89 ♦ 4.1k
8
votes
2
answers
1.5k
views
5 follow
2
answers
Why Longer Reads Must Be Trimmed Or Divided Into 36Bp ?
short aligner cnv written 5.8 years ago by Liuyunlong • 130 • updated 5.8 years ago by Gustavo • 510
14
votes
3
answers
9.1k
views
7 follow
3
answers
Bwa Aligner: How To Get Percentage Of Reads Aligned?
short aligner rna written 5.9 years ago by Doo • 220 • updated 5.9 years ago by Kanne • 400
4
votes
2
answers
1.6k
views
2
answers
Can Soap2 Be Used For Rna-Seq Analysis
short aligner rna written 5.9 years ago by Wligtenberg • 10 • updated 5.9 years ago by Malachi Griffith ♦ 15k
1
vote
1
answer
1.1k
views
1
answer
Are The Pre-Built Reference Sequences From Cbcb Known Transcripts, Or The Entire Genome?
read next-gen bowtie sequencing short aligner reference written 5.9 years ago by Dave Bridges • 1.3k • updated 5.9 years ago by Istvan Albert ♦♦ 74k
3
votes
2
answers
2.3k
views
2
answers
How Does Bowtie Handle Colorspace Data?
short solid alignment bowtie aligner written 6.2 years ago by Bioinfo • 330 • updated 6.0 years ago by Istvan Albert ♦♦ 74k
19
votes
4
answers
2.5k
views
9 follow
4
answers
What Is The Fastest Alignment Tool To Map Reads To A Big Genome Over 4Gb?
short aligner written 6.0 years ago by Dejian • 1.2k • updated 6.0 years ago by Istvan Albert ♦♦ 74k
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