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<prev • 46 results • page 1 of 2 • next >
10
votes
2
answers
3.0k
views
2
answers
Best Practices For Genome Indexing With Bfast
short aligner alignment written 8.7 years ago by Brad Chapman ♦ 9.3k • updated 6 months ago by RamRS ♦ 20k
5
votes
1
answer
2.2k
views
1
answer
How Do I Get Some Basic Counts From Readaligned?
short R bioconductor bowtie aligner written 8.9 years ago by Jeremy Leipzig ♦ 18k • updated 6 months ago by RamRS ♦ 20k
20
votes
5
answers
3.3k
views
10 follow
5
answers
What Is The Fastest Alignment Tool To Map Reads To A Big Genome Over 4Gb?
short aligner written 7.4 years ago by Dejian • 1.2k • updated 12 months ago by predeus • 860
0
votes
1
answer
919
views
1
answer
Minimap2 algorithm : seed-chain-align
minimap2 aligner ont written 16 months ago by KVC_bioinfo • 350
3
votes
1
answer
1.1k
views
1
answer
Minimap2 warning message
minimap2 aligner ont written 16 months ago by KVC_bioinfo • 350
5
votes
0
answers
732
views
0
answers
Gmap aligner taking too long
gmap aligner written 16 months ago by KVC_bioinfo • 350
6
votes
0
answers
1.3k
views
0
answers
GMAP aligner issues
gmap aligner rna-seq written 16 months ago by KVC_bioinfo • 350
0
votes
0
answers
333
views
0
answers
GMAP: Minimal Sampling stratergy
gmap aligner ngs written 16 months ago by KVC_bioinfo • 350 • updated 16 months ago by WouterDeCoster ♦ 37k
3
votes
2
answers
963
views
2
answers
Bowtie2: gtf file - annotation file
gtf bowtie2 aligner written 17 months ago by KVC_bioinfo • 350 • updated 17 months ago by Devon Ryan ♦ 88k
0
votes
0
answers
438
views
0
answers
Aligner to work with PAN genomes and short reads
genome aligner pan written 19 months ago by deepti1rao • 20
4
votes
2
answers
709
views
2
answers
To screen for a good aligner
aligner blast written 19 months ago by deepti1rao • 20 • updated 19 months ago by Macspider • 2.8k
3
votes
1
answer
941
views
1
answer
INDEL left alignment in bam and vcf
indel aligner bowtie bwa blasr written 2.1 years ago by mark.rose • 30 • updated 2.1 years ago by Brian Bushnell ♦ 16k
7
votes
1
answer
2.1k
views
1
answer
Problem installing STAR on Mac OSX
installation aligner star written 2.4 years ago by cristian • 200 • updated 2.4 years ago by Eric Lim • 1.3k
3
votes
0
answers
1.8k
views
0
answers
Annoying STAR aligner problem
aligner star written 2.6 years ago by Biogeek • 340
0
votes
1
answer
645
views
1
answer
HTS protein to protein aligner or DNA to Protein aligner
alignment parameters aligner scoring matrix written 2.6 years ago by swttalyan • 10 • updated 2.6 years ago by Asaf ♦ 5.3k
1
vote
1
answer
1.1k
views
1
answer
Very significant difference in gene counts by different aligner
aligner rna-seq written 3.1 years ago by colonppg • 90
1
vote
0
answers
2.5k
views
0
answers
output SAM file from STAR aligner looks incomplete
aligner alignment star dnaseq written 3.3 years ago by nalandaatmi • 60
1
vote
1
answer
2.9k
views
1
answer
Mapping mate-pairs reads with bowtie2
bowtie2 mate-pair aligner written 3.8 years ago by Biomonika (Noolean) ♦ 3.0k • updated 3.8 years ago by arnstrm • 1.7k
6
votes
2
answers
1.9k
views
2
answers
Which Aligner Would You Recommend For Transcriptome Assembly
aligner transcriptome assembly written 5.8 years ago by Nicolas Rosewick ♦ 7.4k • updated 4.9 years ago by mikhail.shugay ♦ 3.3k
1
vote
1
answer
1.8k
views
1
answer
Different Results Of Tophat And Bowtie2
alignment tophat bowtie2 mapping aligner tophat2 written 5.1 years ago by Mohammad Reza Bakhtiarizadeh • 290 • updated 5.1 years ago by Neilfws ♦ 48k
4
votes
2
answers
3.5k
views
6 follow
2
answers
Which Short Read Mappers Can Handle Overlapping Paired-End Reads?
short aligner paired written 8.1 years ago by Ryan Thompson • 3.4k • updated 5.4 years ago by Adrian Pelin • 2.2k
96
votes
8
answers
25k
views
30 follow
8
answers
What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 8.9 years ago by Pierre Lindenbaum ♦ 117k • updated 5.4 years ago by Biostar ♦♦ 20
6
votes
2
answers
1.8k
views
2
answers
Aligning Short Reads To Homologous Sequences?
short aligner transcriptome written 7.8 years ago by Goldbear • 130 • updated 5.4 years ago by rob234king • 570
0
votes
1
answer
1.2k
views
1
answer
Shrimp2 On Galaxy Instance
aligner written 5.6 years ago by kanwarjag • 930 • updated 5.6 years ago by Matt Shirley ♦ 8.9k
0
votes
1
answer
1.2k
views
1
answer
A Map(?) Of Sequence Alignment
sequence aligner alignment written 5.8 years ago by Karol Pal jr. • 20 • updated 5.8 years ago by zam.iqbal.genome • 1.7k
1
vote
1
answer
1.9k
views
1
answer
Shrimp Uniquely Aligned Reads
aligner samtools rna-seq written 5.9 years ago by vj • 390 • updated 5.9 years ago by Ashutosh Pandey ♦ 11k
17
votes
6
answers
3.2k
views
7 follow
6
answers
Need Recommendations For Aligning Longer (2X250Bp) Reads
aligner written 6.5 years ago by Richard • 550 • updated 6.1 years ago by kanwarjag • 930
2
votes
1
answer
1.9k
views
1
answer
Mapping 454 Rnaseq To A Genome
aligner rna-seq written 6.1 years ago by Darked89 ♦ 4.2k • updated 6.1 years ago by Rohit • 1.3k
14
votes
1
answer
1.6k
views
1
answer
Aligner That Preserves Case?
aligner bioperl msa written 6.1 years ago by Fwip • 490 • updated 6.1 years ago by Manu Prestat ♦ 3.9k
9
votes
1
answer
2.0k
views
1
answer
Mate Pair Alignment Summary
illumina aligner written 6.6 years ago by Richard • 550 • updated 6.6 years ago by Rm ♦ 7.8k
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