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<prev • 46 results • page 1 of 2 • next >
20
votes
5
answers
2.9k
views
10 follow
5
answers
What Is The Fastest Alignment Tool To Map Reads To A Big Genome Over 4Gb?
short aligner written 6.8 years ago by Dejian • 1.2k • updated 4 months ago by predeus • 570
0
votes
1
answer
452
views
1
answer
Minimap2 algorithm : seed-chain-align
minimap2 aligner ont written 8 months ago by KVC_bioinfo • 310
3
votes
1
answer
506
views
1
answer
Minimap2 warning message
minimap2 aligner ont written 8 months ago by KVC_bioinfo • 310
5
votes
0
answers
457
views
0
answers
Gmap aligner taking too long
gmap aligner written 8 months ago by KVC_bioinfo • 310
6
votes
0
answers
688
views
0
answers
GMAP aligner issues
gmap aligner rna-seq written 8 months ago by KVC_bioinfo • 310
0
votes
0
answers
226
views
0
answers
GMAP: Minimal Sampling stratergy
gmap aligner ngs written 8 months ago by KVC_bioinfo • 310 • updated 8 months ago by WouterDeCoster ♦ 30k
3
votes
2
answers
551
views
2
answers
Bowtie2: gtf file - annotation file
gtf bowtie2 aligner written 9 months ago by KVC_bioinfo • 310 • updated 9 months ago by Devon Ryan ♦ 81k
0
votes
0
answers
339
views
0
answers
Aligner to work with PAN genomes and short reads
genome aligner pan written 11 months ago by deepti1rao • 0
4
votes
1
answer
501
views
1
answer
To screen for a good aligner
aligner blast written 11 months ago by deepti1rao • 0 • updated 11 months ago by Macspider • 2.4k
3
votes
1
answer
642
views
1
answer
INDEL left alignment in bam and vcf
indel aligner bowtie bwa blasr written 17 months ago by mark.rose • 10 • updated 17 months ago by Brian Bushnell ♦ 15k
6
votes
1
answer
1.4k
views
1
answer
Problem installing STAR on Mac OSX
installation aligner star written 20 months ago by cristian • 110 • updated 20 months ago by Eric Lim • 710
3
votes
0
answers
1.3k
views
0
answers
Annoying STAR aligner problem
aligner star written 23 months ago by Biogeek • 280
0
votes
1
answer
503
views
1
answer
HTS protein to protein aligner or DNA to Protein aligner
alignment parameters aligner scoring matrix written 24 months ago by swttalyan • 10 • updated 24 months ago by Asaf ♦ 4.8k
1
vote
1
answer
877
views
1
answer
Very significant difference in gene counts by different aligner
aligner rna-seq written 2.5 years ago by colonppg • 80
1
vote
0
answers
2.0k
views
0
answers
output SAM file from STAR aligner looks incomplete
aligner alignment star dnaseq written 2.6 years ago by nalandaatmi • 40
1
vote
1
answer
2.5k
views
1
answer
Mapping mate-pairs reads with bowtie2
bowtie2 mate-pair aligner written 3.2 years ago by Biomonika (Noolean) ♦ 3.0k • updated 3.2 years ago by arnstrm • 1.6k
6
votes
2
answers
1.8k
views
2
answers
Which Aligner Would You Recommend For Transcriptome Assembly
aligner transcriptome assembly written 5.2 years ago by Nicolas Rosewick ♦ 6.5k • updated 4.2 years ago by mikhail.shugay ♦ 3.3k
1
vote
1
answer
1.7k
views
1
answer
Different Results Of Tophat And Bowtie2
alignment tophat bowtie2 mapping aligner tophat2 written 4.4 years ago by Mohammad Reza Bakhtiarizadeh • 270 • updated 4.4 years ago by Neilfws ♦ 48k
4
votes
2
answers
3.2k
views
6 follow
2
answers
Which Short Read Mappers Can Handle Overlapping Paired-End Reads?
short aligner paired written 7.4 years ago by Ryan Thompson • 3.4k • updated 4.7 years ago by Adrian Pelin • 2.1k
96
votes
8
answers
23k
views
30 follow
8
answers
What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 8.3 years ago by Pierre Lindenbaum ♦ 110k • updated 4.7 years ago by Biostar ♦♦ 20
6
votes
2
answers
1.6k
views
2
answers
Aligning Short Reads To Homologous Sequences?
short aligner transcriptome written 7.1 years ago by Goldbear • 130 • updated 4.7 years ago by rob234king • 550
0
votes
1
answer
1.1k
views
1
answer
Shrimp2 On Galaxy Instance
aligner written 4.9 years ago by kanwarjag • 890 • updated 4.9 years ago by Matt Shirley ♦ 8.4k
0
votes
1
answer
1.0k
views
1
answer
A Map(?) Of Sequence Alignment
sequence aligner alignment written 5.1 years ago by Karol Pal jr. • 20 • updated 5.1 years ago by zam.iqbal.genome • 1.6k
1
vote
1
answer
1.7k
views
1
answer
Shrimp Uniquely Aligned Reads
aligner samtools rna-seq written 5.3 years ago by vj • 320 • updated 5.3 years ago by Ashutosh Pandey ♦ 11k
17
votes
6
answers
2.9k
views
7 follow
6
answers
Need Recommendations For Aligning Longer (2X250Bp) Reads
aligner written 5.8 years ago by Richard • 550 • updated 5.4 years ago by kanwarjag • 890
2
votes
1
answer
1.8k
views
1
answer
Mapping 454 Rnaseq To A Genome
aligner rna-seq written 5.5 years ago by Darked89 ♦ 4.2k • updated 5.4 years ago by Rohit • 1.3k
14
votes
1
answer
1.4k
views
1
answer
Aligner That Preserves Case?
aligner bioperl msa written 5.5 years ago by Fwip • 480 • updated 5.5 years ago by Manu Prestat ♦ 3.8k
9
votes
1
answer
1.8k
views
1
answer
Mate Pair Alignment Summary
illumina aligner written 5.9 years ago by Richard • 550 • updated 5.9 years ago by Rm ♦ 7.7k
7
votes
3
answers
6.3k
views
9 follow
3
answers
Aligning Reads From Small Rna-Seq Onto Human Genome
next-gen small sequencing short aligner alignment rna written 6.4 years ago by Leszek ♦ 3.9k • updated 6.4 years ago by Vikas Bansal • 2.3k
6
votes
3
answers
2.8k
views
3
answers
Ngs: How Many Reads Should Be Expected To Map To The Reference Sequence
short aligner next-gen sequencing written 8.2 years ago by Allpowerde • 1.2k • updated 6.5 years ago by Darked89 ♦ 4.2k
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