Showing: alignerreset
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3
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2
answers
120
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2
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Bowtie2: gtf file - annotation file
gtf bowtie2 aligner written 21 days ago by KVC_bioinfo110 • updated 21 days ago by Devon Ryan71k
0
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0
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202
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0
answers
4
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1
answer
289
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1
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To screen for a good aligner
aligner blast written 9 weeks ago by deepti1rao0 • updated 9 weeks ago by Macspider1.5k
3
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1
answer
286
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1
answer
INDEL left alignment in bam and vcf
indel aligner bowtie bwa blasr written 8 months ago by mark.rose10 • updated 8 months ago by Brian Bushnell14k
6
votes
1
answer
738
views
1
answer
Problem installing STAR on Mac OSX
installation aligner star written 11 months ago by cristian80 • updated 11 months ago by khericlim340
2
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0
answers
838
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0
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Annoying STAR aligner problem
aligner star written 14 months ago by Biogeek240
0
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1
answer
319
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1
answer
HTS protein to protein aligner or DNA to Protein aligner
alignment parameters aligner scoring matrix written 14 months ago by swttalyan10 • updated 14 months ago by Asaf4.5k
1
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1
answer
595
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1
answer
1
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0
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1.4k
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0
answers
1
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1
answer
2.0k
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1
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Mapping mate-pairs reads with bowtie2
bowtie2 mate-pair aligner written 2.4 years ago by Biomonika (Noolean)3.0k • updated 2.4 years ago by arnstrm1.6k
6
votes
2
answers
1.6k
views
2
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Which Aligner Would You Recommend For Transcriptome Assembly
aligner transcriptome assembly written 4.4 years ago by Nicolas Rosewick5.4k • updated 3.4 years ago by mikhail.shugay3.2k
1
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1
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1.3k
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1
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Different Results Of Tophat And Bowtie2
alignment tophat bowtie2 mapping aligner tophat2 written 3.6 years ago by Mohammad Reza Bakhtiarizadeh250 • updated 3.6 years ago by Neilfws47k
4
votes
2
answers
2.8k
views
6 follow
2
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Which Short Read Mappers Can Handle Overlapping Paired-End Reads?
short aligner paired written 6.7 years ago by Ryan Thompson3.3k • updated 3.9 years ago by Adrian Pelin2.0k
96
votes
8
answers
22k
views
30 follow
8
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What Methods Do You Use For In/Del/Snp Calling?
short aligner snp sequencing written 7.5 years ago by Pierre Lindenbaum99k • updated 4.0 years ago by Biostar ♦♦ 20
6
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2
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1.4k
views
2
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Aligning Short Reads To Homologous Sequences?
short aligner transcriptome written 6.3 years ago by Goldbear130 • updated 4.0 years ago by rob234king530
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1
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891
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1
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Shrimp2 On Galaxy Instance
aligner written 4.2 years ago by kanwarjag790 • updated 4.1 years ago by Matt Shirley7.9k
0
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1
answer
847
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1
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A Map(?) Of Sequence Alignment
sequence aligner alignment written 4.4 years ago by Karol Pal jr.20 • updated 4.4 years ago by zam.iqbal.genome1.6k
1
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1
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1.4k
views
1
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Shrimp Uniquely Aligned Reads
aligner samtools rna-seq written 4.5 years ago by vj310 • updated 4.5 years ago by Ashutosh Pandey11k
17
votes
6
answers
2.6k
views
7 follow
6
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Need Recommendations For Aligning Longer (2X250Bp) Reads
aligner written 5.0 years ago by Richard500 • updated 4.6 years ago by kanwarjag790
2
votes
1
answer
1.5k
views
1
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Mapping 454 Rnaseq To A Genome
aligner rna-seq written 4.7 years ago by Darked894.1k • updated 4.6 years ago by Rohit1.3k
14
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1
answer
1.2k
views
1
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Aligner That Preserves Case?
aligner bioperl msa written 4.7 years ago by Fwip480 • updated 4.7 years ago by Manu Prestat3.8k
9
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1
answer
1.5k
views
1
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Mate Pair Alignment Summary
illumina aligner written 5.2 years ago by Richard500 • updated 5.2 years ago by Rm7.5k
7
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3
answers
5.9k
views
9 follow
3
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Aligning Reads From Small Rna-Seq Onto Human Genome
next-gen small sequencing short aligner alignment rna written 5.6 years ago by Leszek3.8k • updated 5.6 years ago by Vikas Bansal2.3k
6
votes
3
answers
2.5k
views
3
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Ngs: How Many Reads Should Be Expected To Map To The Reference Sequence
short aligner next-gen sequencing written 7.5 years ago by Allpowerde1.2k • updated 5.7 years ago by Darked894.1k
8
votes
2
answers
1.5k
views
5 follow
2
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Why Longer Reads Must Be Trimmed Or Divided Into 36Bp ?
short aligner cnv written 5.8 years ago by Liuyunlong130 • updated 5.8 years ago by Gustavo510
14
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3
answers
9.1k
views
7 follow
3
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Bwa Aligner: How To Get Percentage Of Reads Aligned?
short aligner rna written 5.9 years ago by Doo220 • updated 5.9 years ago by Kanne400
4
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2
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1.6k
views
2
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Can Soap2 Be Used For Rna-Seq Analysis
short aligner rna written 5.9 years ago by Wligtenberg10 • updated 5.9 years ago by Malachi Griffith15k
1
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1
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1.1k
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1
answer
3
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2
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2.3k
views
2
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How Does Bowtie Handle Colorspace Data?
short solid alignment bowtie aligner written 6.2 years ago by Bioinfo330 • updated 6.0 years ago by Istvan Albert ♦♦ 74k
19
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4
answers
2.5k
views
9 follow
4
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What Is The Fastest Alignment Tool To Map Reads To A Big Genome Over 4Gb?
short aligner written 6.0 years ago by Dejian1.2k • updated 6.0 years ago by Istvan Albert ♦♦ 74k
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