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4
votes
1
answer
93
views
1
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How to use GSNAP/GMAP for mm10 genome
genome assembly alignment rna-seq written 1 day ago by Moneeb Bajwa • 0 • updated 1 day ago by genomax ♦ 52k
4
votes
1
answer
59
views
1
answer
Using UCSC mm10 for organoids
assembly next-gen rna-seq alignment written 2 days ago by Moneeb Bajwa • 0
2
votes
0
answers
130
views
0
answers
Linux: Error in make bwa
alignment error bwa linux written 2 days ago by t.kranenburg • 30
0
votes
0
answers
76
views
0
answers
TopHat2 high discordant alignment percentage?
alignment rna-seq written 2 days ago by edsouza • 0
2
votes
1
answer
75
views
1
answer
Appending sequence decoys and virus sequences to reference genome (GRCh38)
genome assembly alignment written 2 days ago by newbio17 • 0 • updated 2 days ago by WouterDeCoster ♦ 30k
0
votes
0
answers
74
views
0
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How to install LigandScout software on Linux?
ligandscout alignment linux written 2 days ago by edjan.silva • 0 • updated 2 days ago by h.mon ♦ 16k
0
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0
answers
57
views
0
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Transcript features and annotations
alignment transcript written 9 days ago by Sergio Martínez Cuesta • 50 • updated 2 days ago by Biostar ♦♦ 20
6
votes
1
answer
102
views
5 follow
1
answer
Quick and easy way to get alignment stats from many SAM/BAM files?
alignment rna-seq written 2 days ago by goodez • 240
0
votes
0
answers
67
views
0
answers
Mapping bisulfite-treated PE reads - why are both reads always reported to align to the same strand?
alignment written 2 days ago by adam.nunn • 0
3
votes
2
answers
956
views
2
answers
HISAT2 MAPQ scoring scheme
alignment written 16 months ago by prasundutta87 • 170
4
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0
answers
2.0k
views
0
answers
BWA-mem MAPQ Calculation
mq bwa-mem mapping quality mapq alignment written 2.0 years ago by rfriedman22 • 40 • updated 3 days ago by h.mon ♦ 16k
0
votes
0
answers
86
views
0
answers
Online blast using biopython
alignment written 3 days ago by aleksanderczeszyk • 0
2
votes
0
answers
69
views
0
answers
How to prove one set of protein is more conserved than the other set?
sequence alignment written 3 days ago by 465186528 • 0
5
votes
1
answer
161
views
1
answer
How can I implement RY-coding to every third nucleotide in an alignment using command line?
alignment written 4 days ago by lzhou • 0 • updated 4 days ago by h.mon ♦ 16k
3
votes
0
answers
344
views
0
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finding variants in the low to no coverage areas of bacterial genomes
alignment snp written 8 months ago by pdm37 • 10 • updated 4 days ago by Biostar ♦♦ 20
3
votes
1
answer
65
views
1
answer
Remove secondary alignments in RNA-seq analysis?
alignment rna-seq hisat2 written 4 days ago by nanoide • 10
0
votes
0
answers
75
views
0
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Tophat2 Aligning extremely short reads
tophat alignment rna-seq sequencing written 5 days ago by biogirl04 • 0
2
votes
0
answers
185
views
0
answers
What is the prefered script for HISAT2 genome-guided using draft genome? --dta or --exon ?
genome guided alignment rna-seq hisat2 written 18 days ago by Farbod • 3.1k
11
votes
1
answer
2.3k
views
1
answer
Can´T Find The Snps With Samtools (Only Get Indels)
indel alignment samtools snp written 6.9 years ago by Pilar E. • 90 • updated 6 days ago by Biostar ♦♦ 20
3
votes
1
answer
126
views
1
answer
Base by base alignment from BLAST to reference
alignment blast written 8 days ago by kspata • 30 • updated 8 days ago by h.mon ♦ 16k
2
votes
1
answer
97
views
1
answer
Faster processing of paired end FASTQ files
sequence alignment rna-seq written 8 days ago by volatic • 0 • updated 8 days ago by swbarnes2 ♦ 3.8k
6
votes
1
answer
130
views
1
answer
BWA mem of a heavily masked reference index takes more time than the normal reference?
alignment bwa written 8 days ago by Duarte Molha • 200 • updated 8 days ago by karl.stamm ♦ 3.3k
0
votes
0
answers
67
views
0
answers
Effect of mutation in DNA sequence on transcription factor binding sites
genome sequence alignment written 8 days ago by PhdinDNA • 0
3
votes
3
answers
107
views
3
answers
Bowtie alignment of piRNAs to find potential targets
alignment pirna bowtie written 10 days ago by mujupas • 50
11
votes
4
answers
2.7k
views
5 follow
4
answers
Extract reads with variant at given position
alignment sequencing written 3.5 years ago by philip.jonsson • 30 • updated 9 days ago by Biostar ♦♦ 20
0
votes
0
answers
67
views
0
answers
News: Comparative Genomics (Berlin, 1-5 October 2018)
sv assembly news alignment snp written 9 days ago by carlopecoraro2 • 710
11
votes
2
answers
2.6k
views
2
answers
Where can I get ?or how can I make a mappability track for hg38 assembly
assembly sequence alignment sequencing written 2.4 years ago by manojkumar_bhosale • 60 • updated 10 days ago by shashankbic • 10
3
votes
2
answers
177
views
5 follow
2
answers
What is the process after mapping ?
assembly alignment written 10 days ago by young_bioinformatician • 0 • updated 10 days ago by Vijay Lakhujani ♦ 2.8k
2
votes
1
answer
100
views
1
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Why do I have more reads in my .bam file than in my .fastq input file?
fastq alignment bam written 10 days ago by francois • 10 • updated 10 days ago by Pierre Lindenbaum ♦ 110k
0
votes
0
answers
55
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0
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Updated Alu reference Alignments
alignment alu repeatmasker repbase written 10 days ago by Mariela Cortés-López • 10
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