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2
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53
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Using featureCounts on paired-end reads aligned with HISAT2 resulting in 0 assigned fragments
gene assembly alignment rna-seq written 12 hours ago by turo.1 • 10 • updated 6 hours ago by h.mon ♦ 31k
1
vote
0
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102
views
0
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How can I count the symbols in a given string / text and, as a result of that count, remove the characters
genome gene alignment sequence software error written 7 hours ago by projetoic • 0
0
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1
answer
47
views
1
answer
Biopython pairwise sequence alignment behavior change between 1.59 and 1.76
software error alignment sequence written 1 day ago by sanner • 0
1
vote
1
answer
30
views
1
answer
How to get all possible alignments from MAFFT or another global aligner
alignment sequence written 9 hours ago by Elephantdumbo • 20 • updated 8 hours ago by genomax ♦ 90k
0
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1
answer
45
views
1
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About alignment rate of Dendrobium officinale (a plant) used RSEM software
alignment rna-seq rsem written 1 day ago by wensulin93 • 0 • updated 15 hours ago by Rogerio Ribeiro • 30
6
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2
answers
60
views
2
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Extract the alignments from a Bam file by name of the read
alignment written 1 day ago by 2xijok • 50 • updated 1 day ago by Jorge Amigo ♦ 12k
1
vote
1
answer
90
views
1
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BWA-MEM - Improperly Paired Reads
genome gatk next-gen alignment bwa written 2 days ago by mglasena • 0 • updated 2 days ago by genomax ♦ 90k
0
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1
answer
50
views
1
answer
Using gffread to extract annotated fasta sequences from a genome
genome gff alignment sequencing written 2 days ago by rgn5011 • 0
2
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1
answer
68
views
1
answer
CRAM file to BAM file without reference
alignment written 2 days ago by badro.eldin • 0 • updated 2 days ago by ATpoint ♦ 39k
2
votes
1
answer
211
views
1
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Why STAR Aligner limits alignments to soft-masked regions (lowercase letters in reference genome)?
alignment soft-masked regions genome gsnap written 7 weeks ago by MarVi • 20 • updated 2 days ago by Devon Ryan ♦ 96k
2
votes
1
answer
67
views
1
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Which reference genome file is correct?
genome assembly alignment rna-seq written 2 days ago by theodore.killian • 10 • updated 2 days ago by genomax ♦ 90k
2
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0
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92
views
0
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Error running blastn on Linux: Critical [blastn] External MBEDTLS version mismatch: 2.16.2 headers vs. 2.16.3 runtime
software error alignment written 3 days ago by 2jackcummins • 0
0
votes
1
answer
62
views
1
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aligning 5' seq with - white list file
alignment written 6 days ago by kanwarjag • 1.1k • updated 3 days ago by Kevin Blighe ♦ 66k
1
vote
1
answer
54
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1
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paired reads aligned at the same genomic position
alignment bam written 4 days ago by irfanwustl • 10 • updated 4 days ago by MatthewP • 760
0
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0
answers
52
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0
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How to know the aligned base of a specific position from a read
alignment bam written 4 days ago by irfanwustl • 10
0
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0
answers
45
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0
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How represent isoforms in different tracks in a genome browser?
reads alignment salmon rna-seq isoform written 4 days ago by Bardt9 • 0
10
votes
1
answer
117
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8 follow
1
answer
Help interpreting BLAST results? (Max score/Percent. Identity/E-values)
gene genome alignment written 5 days ago by cia • 10 • updated 5 days ago by Mensur Dlakic • 6.8k
1
vote
1
answer
74
views
1
answer
What is the format of the input file to the IGV software?
alignment rna-seq written 9 days ago by Fahimeh.6868 • 0
0
votes
1
answer
53
views
1
answer
Filtering low quality score bases from BAM file
alignment rna-seq quality score written 5 days ago by tayyabaalvi82 • 0 • updated 5 days ago by Macspider • 3.2k
0
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0
answers
42
views
0
answers
Get both ends of fragment using pysam
alignment written 5 days ago by h.c.donker • 0
4
votes
1
answer
58
views
1
answer
python calculation of protein multiple sequence alignment
conservation python alignment written 5 days ago by ttubiana • 20 • updated 5 days ago by Macspider • 3.2k
1
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0
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573
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0
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align reads to regions with similar sequences
alignment written 2.5 years ago by qwzhang0601 • 70 • updated 5 days ago by Biostar ♦♦ 20
2
votes
1
answer
69
views
1
answer
mapping to incomplete reference
bowtie2 metagenomics alignment mapping written 6 days ago by issia • 0 • updated 6 days ago by genomax ♦ 90k
0
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0
answers
57
views
0
answers
Using Samtools on a Mac terminal
alignment written 6 days ago by valerie.borde • 0 • updated 6 days ago by RamRS ♦ 30k
4
votes
1
answer
897
views
5 follow
1
answer
Bowtie2 alignment help for ATAC-seq
bowtie2 alignment data analysis atac-seq written 12 months ago by mrs.whirly • 0 • updated 6 days ago by ElCascador • 20
2
votes
1
answer
62
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1
answer
Racon polishing script that maps long reads and does racon polishing continuously until no changes are seen
genome assembly alignment sequencing written 6 days ago by zack.saud • 20 • updated 6 days ago by colindaven • 2.4k
0
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1
answer
65
views
1
answer
Fasta file from Gencode
sequence alignment written 6 days ago by rob.costa1234 • 250 • updated 6 days ago by genomax ♦ 90k
0
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0
answers
52
views
0
answers
Mega 6 documents
software error alignment written 6 days ago by nazninislamnif • 20
3
votes
1
answer
57
views
1
answer
Errors with Picard CollectRnaSeqMetrics
software error alignment rna-seq written 7 days ago by bertb • 10 • updated 7 days ago by Pierre Lindenbaum ♦ 130k
2
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0
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75
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0
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alignment with STAR for loop multiples files
alignment star rna-seq written 7 days ago by eridanus • 0 • updated 7 days ago by genomax ♦ 90k
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