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5
votes
2
answers
5.1k
views
2
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dxy (Nei 1987) calculation
alignment next-gen sequence snp written 4.1 years ago by modernsynthesis • 30 • updated 2 hours ago by beausoleilmo • 300
1
vote
0
answers
61
views
0
answers
NCBI website BLAST and local computer blast
alignment written 9 hours ago by t4192 • 10
0
votes
0
answers
36
views
0
answers
Co-expression Network on Cytoscape between miRNA-mRNA and mRNA-mRNA
genome assembly alignment rna-seq sequencing written 8 hours ago by yronimuz • 0
0
votes
0
answers
67
views
0
answers
Genome aligner that shows annotations too
genome alignment annotations written 2 days ago by danvoronov • 10
1
vote
0
answers
77
views
0
answers
Run RNA-seq analysis with selected targets
alignment cufflinks rna-seq written 1 day ago by dodausp • 130
5
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0
answers
75
views
5 follow
0
answers
Generate count table using Samtools
assembly alignment written 1 day ago by vishalchanda364 • 20
0
votes
0
answers
46
views
0
answers
How do determine the ratio of mRNA:rRNA:ncRNA in an RNA-seq dataset?
alignment rna-seq written 20 hours ago by mb314 • 0
0
votes
2
answers
80
views
2
answers
How to correctly generate alignment Stat in RNA-Seq
alignment rna-seq sequencing written 1 day ago by rohitsatyam102 • 60 • updated 1 day ago by brianj.park • 10
5
votes
2
answers
153
views
6 follow
2
answers
Variant calling on Nanopore reads
genome alignment written 5 weeks ago by felix • 20 • updated 1 day ago by colindaven • 1.9k
5
votes
1
answer
109
views
7 follow
1
answer
Forum: Ru/Read Until in Nanopore sequencers
sequencing forum alignment oxford nanopore written 3 days ago by jean.elbers • 1.3k
0
votes
0
answers
81
views
0
answers
Picard flag issue
alignment sequencing written 6 days ago by mw • 10
0
votes
0
answers
112
views
0
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Get positions in original sequence file after alignment/trimming
sequence ensembl alignment R strings written 8 weeks ago by palabari • 10 • updated 1 day ago by shenwei356 ♦ 5.0k
2
votes
0
answers
148
views
0
answers
How to map the first part of a read and ignoring the rest of it?
alignment bwa targeted sequencing sequencing written 6 weeks ago by sh.kazempour94 • 0 • updated 2 days ago by Biostar ♦♦ 20
1
vote
2
answers
91
views
2
answers
Visualize paired end reads
paired-end alignment rna-seq written 6 days ago by Chirag Nepal • 2.2k • updated 2 days ago by jbalberge • 90
1
vote
0
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56
views
0
answers
Problem in using tablemaker for bam & gtf files
tablemaker stringtie alignment samtools rna-seq written 3 days ago by Doofania • 10 • updated 3 days ago by ATpoint ♦ 29k
1
vote
2
answers
60
views
2
answers
Error in MEGA x while phylogenetic analysis
alignment written 3 days ago by jahanzaib119311 • 0
0
votes
0
answers
44
views
0
answers
PRANK aligner abbreviates gene IDs
gene alignment written 4 days ago by daw277 • 0
9
votes
3
answers
3.1k
views
8 follow
3
answers
how to align lists of words using biopython pairwise2
alignment sequence written 2.9 years ago by euacar • 10 • updated 5 days ago by yannis1962 • 0
4
votes
1
answer
79
views
1
answer
Variant calling: Sambama sort command not found
alignment snp written 5 days ago by cseplomarton • 0 • updated 5 days ago by Martina • 20
0
votes
0
answers
52
views
0
answers
BWA MEM paramenter
forum alignment sequencing written 5 days ago by deniselavezzari • 0 • updated 5 days ago by ATpoint ♦ 29k
3
votes
1
answer
117
views
1
answer
Can anyone suggest me the tool to convert the gene ids to gene names?
gene sequence alignment written 7 days ago by harshraje19 • 20 • updated 6 days ago by Kevin Blighe ♦ 54k
0
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0
answers
55
views
0
answers
How to remove aligned sequnces?
alignment next-gen sequencing written 6 days ago by vishalchanda364 • 20
2
votes
3
answers
123
views
5 follow
3
answers
Sequences alignment program
alignment written 7 days ago by biancabernasconi • 0 • updated 6 days ago by onestop_data • 160
2
votes
0
answers
65
views
0
answers
The rate of "aligned concordantly exactly 1 time" in Hisat2
alignment rna-seq written 7 days ago by f86222 • 0
0
votes
0
answers
77
views
0
answers
Short protein sequence alignment
alignment sequence blast written 7 days ago by Bioinformatician_in_trouble • 10
0
votes
0
answers
47
views
0
answers
Tool for removing Spurious alignments from metagenomic alignment
alignment written 7 days ago by vishalchanda364 • 20
0
votes
0
answers
68
views
0
answers
no unique mapped paired-end reads in BAM file
ngs alignment sequencing written 7 days ago by Ric • 290
3
votes
1
answer
69
views
1
answer
Running an alignment with merged paired end reads, can I use bowtie2 or bwa mem?
alignment next-gen sequence sequencing written 8 days ago by m.radz • 0 • updated 8 days ago by ATpoint ♦ 29k
0
votes
1
answer
57
views
1
answer
Alignment of sequences composed by units of multiple characters
alignment written 8 days ago by benjap700 • 0 • updated 8 days ago by Asaf ♦ 7.0k
0
votes
0
answers
53
views
0
answers
KisSplice installation failed at the make step
alignment rna-seq kissplice written 9 days ago by turchi • 0 • updated 9 days ago by zx8754 ♦ 9.0k
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