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<prev • 3,064 results • page 1 of 103 • next >
0
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29
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Gene identifiers in rMATS output
splicing alignment rna-seq written 1 hour ago by cjames.gblock • 0
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0
answers
55
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0
answers
Stringtie/gffcompare annotation is missing many transcripts (high sensitivity, low precision)
annotation alignment rna-seq written 2 hours ago by Ace • 0
0
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0
answers
45
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0
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RepeatMasker: considering only the matches with a specific length
alignment length reference repeatmasker written 3 hours ago by gabri • 10
4
votes
2
answers
126
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5 follow
2
answers
Comparison between multiple fasta files in terms of presence or absence of certain sequences
sequence alignment rna-seq written 7 hours ago by Bernhard.T.Werner • 0 • updated 5 hours ago by WouterDeCoster ♦ 20k
0
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1
answer
114
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1
answer
Any tool that aligns sequences that use degenerated nucleotide coding
alignment sequence degenerated coding dna written 6 hours ago by dabid • 0 • updated 6 hours ago by Jean-Karim Heriche ♦ 11k
0
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0
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61
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0
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How BWA count the occurrence array?
alignment written 16 hours ago by ghostforever.shi • 10
3
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0
answers
91
views
0
answers
Tophat2 Vs Hisat2
alignment next-gen rna-seq sequencing written 16 hours ago by poojasethiya • 10
0
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0
answers
75
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0
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Create PSSM or smp file by blast+ tools
alignment blast written 1 day ago by foroughmand • 0
2
votes
0
answers
155
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0
answers
Obtaining Quality score of the mapped sequences - BBMap
alignment written 4 weeks ago by madhu.9124 • 10 • updated 1 day ago by Biostar ♦♦ 20
0
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0
answers
91
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0
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Phylogenetic Software used for detecting defective taxa and flat sequences in multiple sequences alignment foe enhancing bootstrap value
alignment written 2 days ago by rathershabir100 • 0
8
votes
2
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180
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2
answers
Is 'hg19' the same as 'Human Genome Reference 38' ?
genome alignment grch38 hg19 sequencing written 2 days ago by ycsm • 10 • updated 2 days ago by skim • 20
1
vote
1
answer
337
views
1
answer
How to use UCSC net file to get genome rearrangement info between two species
genome alignment blast ucsc written 13 months ago by Rongbin • 0 • updated 2 days ago by Biostar ♦♦ 20
0
votes
2
answers
641
views
2
answers
STAR mapper: unrecoginzed parameter name "sjdbInsertSave" in input "genomeParameters.txt
alignment rna-seq written 13 months ago by diarmaidtobin • 0 • updated 3 days ago by erwan.scaon • 200
1
vote
0
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118
views
0
answers
A viewer or aligner to compare genomes
genome alignment written 4 days ago by tianlongapp • 10
0
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0
answers
90
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0
answers
Inferring the zygosity of large indels (transposon variants) from bam paired-end mapping to reference and bed coordinate files
indel zygosity alignment samtools bam written 4 days ago by rimjhim.roy.ch • 50
1
vote
1
answer
144
views
1
answer
Lack of 5' UTR in genome?
gene alignment written 4 days ago by jjrin • 10
0
votes
1
answer
132
views
1
answer
Weird fragments when aligning PE reads to duplicated genes.
alignment chip-seq written 9 days ago by bsksln • 0 • updated 4 days ago by colindaven • 260
10
votes
1
answer
175
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6 follow
1
answer
Removing PCR duplicates - fastq or BAM?
duplicates fastq alignment bam written 5 days ago by rbronste • 120 • updated 4 days ago by Istvan Albert ♦♦ 73k
1
vote
1
answer
134
views
1
answer
Kallisto pseudobam to IGV
alignment igv kallisto pseudobam rna-seq written 5 days ago by mac • 50 • updated 5 days ago by andrew.j.skelton73 • 3.5k
4
votes
2
answers
139
views
5 follow
2
answers
Count mismatchs/Indel number per position in BAM file ?
alignment written 5 days ago by Chadi Saad • 30 • updated 5 days ago by Pierre Lindenbaum ♦ 96k
3
votes
2
answers
139
views
5 follow
2
answers
How to determine gap length of aligned segments for a given read?
alignment split sequencing written 5 days ago by cnvspam • 80 • updated 5 days ago by Istvan Albert ♦♦ 73k
0
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0
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94
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0
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Will the ordering of fasta references influence bwa mem alignment result?
alignment bwa written 5 days ago by hanschen • 0
2
votes
1
answer
115
views
1
answer
Extracting string from every other line
alignment sequence sequencing written 5 days ago by zoegward • 0 • updated 5 days ago by Macspider • 1.2k
0
votes
1
answer
100
views
1
answer
Bowtie2 parallelization on cluster
bowtie2 alignment written 5 days ago by rbronste • 120 • updated 5 days ago by erictleung • 80
1
vote
0
answers
130
views
0
answers
Single cell rna-seq (cel-seq 2) read position shift?
alignment next-gen sequence rna-seq sequencing written 13 days ago by zhe • 10
2
votes
1
answer
112
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1
answer
Splitting a bam file by unique optional TAG field
merge bam alignment sequencing written 6 days ago by dccroucher • 0 • updated 6 days ago by Pierre Lindenbaum ♦ 96k
7
votes
1
answer
193
views
1
answer
How to merge/combine previously split bam files?
merge bam alignment bam sequencing written 6 days ago by ycsm • 10
3
votes
1
answer
102
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1
answer
deepTools draw coverage for specific region
deeptools alignment bam written 6 days ago by Medhat • 6.7k • updated 6 days ago by Devon Ryan ♦ 69k
0
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0
answers
113
views
0
answers
How can I right align InDels ?
alignment written 6 days ago by Chadi Saad • 30 • updated 6 days ago by Pierre Lindenbaum ♦ 96k
0
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0
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111
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0
answers
Connor Deduplication - AttributeError: 'module' object has no attribute 'AlignmentFile'
barcoding alignment deduplication connor written 7 days ago by jsneaththompson • 0
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