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94
votes
15
answers
33k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 10.4 years ago by User 1586 • 280 • updated 2.7 years ago by endrebak • 840
18
votes
10
answers
4.6k
views
11 follow
10
answers
Manual Msa Editor
alignment multiple written 8.9 years ago by Arjen Ten Have • 350 • updated 4.7 years ago by Suzanne • 70
37
votes
8
answers
4.3k
views
13 follow
8
answers
Quick Programming Challenge: How Do I Calculate Reference Coverage From A Table Of Alignment Starts And Ends?
alignment code programming written 10.8 years ago by Jeremy Leipzig ♦ 19k • updated 2.4 years ago by _r_am ♦ 32k
109
votes
8
answers
41k
views
54 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 9.7 years ago by Matthieu • 460 • updated 4.9 years ago by alexisdereeper • 30
21
votes
8
answers
25k
views
7 follow
8
answers
how to unzip the files in batch?
next-gen alignment rna-seq snp written 5.7 years ago by flavobacteria • 50 • updated 2.7 years ago by saraholiver307 • 0
11
votes
7
answers
2.5k
views
8 follow
7
answers
Multi Sequences Alignment
sequence alignment written 9.8 years ago by Ardmore • 140 • updated 9.8 years ago by Kartik Sunagar • 290
36
votes
7
answers
1.6k
views
16 follow
7
answers
Forum: Survey/Vote: If you could double the speed of any three commandline tools, which three would they be?
next-gen forum sequencing alignment rna-seq blast written 3.2 years ago by dhbradshaw • 130 • updated 3.2 years ago by Puli Chandramouli Reddy • 190
13
votes
6
answers
5.7k
views
7 follow
6
answers
Clustalw Alignment Problem
alignment clustalw biopython written 10.7 years ago by Thaman • 3.3k • updated 2.4 years ago by anyjjhmx • 0
37
votes
6
answers
7.1k
views
12 follow
6
answers
Best Spliced Aligner To Human Genome With Limited Rna-Seq Reads
splicing alignment rna written 10.6 years ago by Wjeck • 480 • updated 10.3 years ago by Zee • 40
38
votes
6
answers
9.3k
views
14 follow
6
answers
Multiple Sequence Alignment For Cdnas
alignment cdna clustalw multiple written 10.4 years ago by Haibao Tang ♦ 3.0k • updated 4.7 years ago by kissaj • 100
31
votes
6
answers
3.1k
views
7 follow
6
answers
Determining Which New Snps In 1000G Data Result In Coding Changes
genome linkage alignment protein prediction written 10.3 years ago by Ryan D • 3.4k • updated 2.0 years ago by Biostar ♦♦ 20
40
votes
6
answers
12k
views
11 follow
6
answers
Pairwise Genome Alignment
pairwise genome alignment written 10.2 years ago by Andrea_Bio • 2.6k • updated 9.4 years ago by Larry_Parnell ♦ 16k
44
votes
6
answers
2.7k
views
6 follow
6
answers
What Would You Recommend For Great Examples Of Sequence Alignment In Biology?
sequence alignment written 9.4 years ago by The Original Gtk • 190 • updated 9.4 years ago by jli99 • 150
57
votes
6
answers
43k
views
32 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 9.0 years ago by Ric • 170 • updated 9.0 years ago by Ketil ♦ 4.0k
15
votes
6
answers
7.1k
views
14 follow
6
answers
A Question About The Sam Entry For A Query Aligned To Multiple Places
format alignment sam bowtie multiple written 8.9 years ago by Tianyang Li • 490 • updated 8.8 years ago by Xianjun • 280
21
votes
6
answers
7.9k
views
10 follow
6
answers
Problem With Picard Dedup In Illumina Alignment Pipeline
picard duplicates alignment written 7.6 years ago by tommivat • 240 • updated 5.3 years ago by yuanyuan.zhang.cau • 0
10
votes
6
answers
14k
views
6
answers
How we can analyze sanger sequence chromatogram?
sanger alignment snp sequencing written 6.2 years ago by Elnaaz • 40
32
votes
6
answers
10k
views
5 follow
6
answers
RNA-seq differential expression analysis, which aligner to choose between BWA/tophat/Bowtie?
alignment next-gen rna-seq written 6.0 years ago by EagleEye ♦ 6.7k
15
votes
6
answers
5.3k
views
5 follow
6
answers
color a sequence alignment
alignment written 5.9 years ago by silvia.caprari84 • 50 • updated 4.7 years ago by Suzanne • 70
3
votes
6
answers
2.0k
views
6
answers
Standalone Multiple Sequence alignment tool
assembly alignment sequencing written 4.4 years ago by akhilvbioinfo • 160 • updated 3.2 years ago by Cupton • 70
26
votes
6
answers
9.9k
views
7 follow
6
answers
HISAT2 or Tophat2
alignment rna-seq written 4.1 years ago by Payal • 100 • updated 4.0 years ago by Charles Warden ♦ 8.0k
18
votes
6
answers
2.1k
views
11 follow
6
answers
How to match genes of one file to another but in multiple columns
genome gene sequence alignment written 2.9 years ago by Bweil2 • 10
19
votes
6
answers
1.6k
views
7 follow
6
answers
Tophat vs Bowtie alignment rates
bowtie2 tophat alignment written 23 months ago by am3 • 70
23
votes
5
answers
8.3k
views
5 follow
5
answers
Get Pairwise Sequence Identity
alignment blast written 10.6 years ago by Chris • 1.6k
7
votes
5
answers
3.4k
views
6 follow
5
answers
How To Find All Rna Stems In Genomic Data?
genome rna alignment search written 10.2 years ago by None • 30 • updated 9.4 years ago by Qdjm ♦ 1.9k
16
votes
5
answers
3.0k
views
6 follow
5
answers
Ab Initio Unsupervised Methods For Inferring Quality Of Multiple Sequence Alignments
quality alignment multiple written 10.2 years ago by Aleksandr Levchuk ♦ 3.2k • updated 9.4 years ago by Casey Bergman ♦ 18k
33
votes
5
answers
6.7k
views
13 follow
5
answers
Should I Strip Alignment Columns Before Making A Tree?
phylogenetics alignment tree written 9.9 years ago by John • 770 • updated 7.4 years ago by Biostar ♦♦ 20
22
votes
5
answers
10k
views
11 follow
5
answers
Bam : Extract Only Alignment With A Specific Length
alignment extraction length rna bam written 9.4 years ago by Nicolas Rosewick ♦ 9.3k • updated 9.4 years ago by Marvin • 850
23
votes
5
answers
18k
views
11 follow
5
answers
Number Of Reads In A Sam File Which Are Assigned To Each Chromosome?
alignment sam written 9.2 years ago by KCC • 4.0k • updated 3.3 years ago by Simply Bioinformatics • 180
14
votes
5
answers
2.7k
views
6 follow
5
answers
Which Pairwise Global Alignment Tools Are Available?
software sequence alignment dna written 9.0 years ago by Frédéric Mahé • 3.1k • updated 2.9 years ago by Biostar ♦♦ 20
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