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13
votes
2
answers
2.1k
views
2
answers
13
votes
1
answer
14k
views
10 follow
1
answer
Pairwise Sequence Alignment With R
R alignment written 9.0 years ago by Lakshmi50 • updated 7 months ago by gjhansi1110
12
votes
5
answers
4.6k
views
7 follow
5
answers
Extract reads with variant at given position
alignment sequencing written 5.8 years ago by philip.jonsson30 • updated 3 months ago by Biostar ♦♦ 20
6
votes
1
answer
541
views
7 follow
1
answer
5
votes
4
answers
4.7k
views
5 follow
4
answers
Blast Contigs To A Reference Sequence And Obtain An E-Value
assembly alignment blast written 7.2 years ago by ant0422ant0 • updated 7 months ago by Biostar ♦♦ 20
6
votes
2
answers
4.3k
views
6 follow
2
answers
Sequence alignment help: BWA is not my friend!
next-gen alignment written 6.5 years ago by ab.tsubaki50 • updated 8 weeks ago by Biostar ♦♦ 20
10
votes
3
answers
16k
views
11 follow
3
answers
can picard use multiple threads?
alignment written 6.4 years ago by naruto1nrt30 • updated 3 months ago by Benedek Dank√≥10
14
votes
1
answer
13k
views
1
answer
Error while running BWA mem
assembly next-gen alignment sequencing written 5.5 years ago by ravi.uhdnis180 • updated 5 months ago by elbakri.fatimazahrae0
5
votes
1
answer
1.3k
views
6 follow
1
answer
Adding sequences to preexisting MAF alignment
genome alignment sequence written 3.4 years ago by Carla60 • updated 6 months ago by shuifeng.paper0
2
votes
0
answers
662
views
0
answers
Mapping short reads (23 b) to large catalog of short (20 b) sequences
alignment written 3.0 years ago by NaskoMak0 • updated 8 months ago by Biostar ♦♦ 20
2
votes
0
answers
1.4k
views
5 follow
0
answers
Command line to add algorithm option for MAFFT using GUIDANCE2
alignment bash written 2.7 years ago by NicoN6420 • updated 5 months ago by milesdroberts0
15
votes
2
answers
5.9k
views
15 follow
2
answers
bwa mem and multiply mapped reads
alignment bwa repetitive genome written 2.7 years ago by lfreeborn20 • updated 24 days ago by Biostar ♦♦ 20
6
votes
1
answer
2.2k
views
6 follow
1
answer
HISAT2 Indexing using annotation for Rattus_norvegicus
hisat2 annotation alignment ensembl index written 2.1 years ago by neranjan40 • updated 10 months ago by robin.mesnage0
2
votes
1
answer
1.8k
views
1
answer
PSSM (Position Specific Scoring Matrix) from NCBI convert to matrix format
alignment sequence written 21 months ago by gaiboyan2320 • updated 5 months ago by GenoMax92k
5
votes
1
answer
1.1k
views
5 follow
1
answer
Viewing and editing FASTQ files
next-gen fastq alignment rna-seq sequencing written 18 months ago by gprashant1770 • updated 12 weeks ago by Biostar ♦♦ 20
1
vote
2
answers
234
views
6 follow
2
answers
Question: How to calculate base count for each base in one spot in sam file
alignment written 11 months ago by ncxhit0 • updated 11 months ago by ATpoint42k
1
vote
0
answers
614
views
0
answers
6
votes
2
answers
1.1k
views
6 follow
2
answers
Variant calling on Nanopore reads
genome alignment written 10 months ago by felix20 • updated 9 months ago by colindaven2.5k
2
votes
0
answers
185
views
5 follow
0
answers
chromosomal distribution with sequence data
gene genome sequence tool alignment written 10 months ago by shwetamgr10 • updated 10 months ago by zx87549.7k
2
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0
answers
226
views
0
answers
4
votes
0
answers
263
views
0
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Finding contigs with alignment
alignment written 8 months ago by zebratown0
2
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1
answer
195
views
1
answer
1
vote
1
answer
157
views
1
answer
3
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0
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472
views
0
answers
6
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0
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253
views
5 follow
0
answers
4
votes
1
answer
349
views
1
answer
Question related to time complexity of Needleman-Wunsch Algorithm
alignment written 6 months ago by shreya.verma80810 • updated 6 months ago by Rob4.5k
1
vote
0
answers
129
views
0
answers
1
vote
1
answer
204
views
1
answer
"ProtTest: wrong tree format, exiting..." when running ProtTest
software error gene alignment written 6 months ago by niuzx958110 • updated 6 months ago by Mensur Dlakic7.3k
3
votes
1
answer
410
views
1
answer
How to generate a mouse reference genome in STAR?
genome mouse alignment star rna-seq written 5 months ago by biostarukha10 • updated 5 months ago by khorms210
3
votes
1
answer
308
views
5 follow
1
answer
RNA-Seq data Quality Assessment- BoxPlot Interpretation
R forum alignment rna-seq sequencing written 3 months ago by Aynur40 • updated 3 months ago by rpolicastro2.4k
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