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2
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0
answers
54
views
0
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How to convert bam to fasta
alignment next-gen sequencing written 17 hours ago by rijithraj • 0 • updated 17 hours ago by GenoMax ♦ 95k
0
votes
2
answers
46
views
2
answers
Creation of subset of diamond database
alignment written 18 hours ago by mark.bogen • 0 • updated 16 hours ago by buchfink • 140
0
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1
answer
45
views
1
answer
A tool or algorithm to unify (combine) two sequences based on their global alignment?
alignment written 1 day ago by ehsansepahi • 0
2
votes
1
answer
90
views
1
answer
Bowtie2 command does not produce output file
genome assembly alignment chip-seq rna-seq written 1 day ago by a.hayat20 • 0 • updated 1 day ago by seidel ♦ 7.2k
0
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0
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47
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0
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RNA-seq pipeline for degraded RNA
alignment pipeline rna-seq degraded written 1 day ago by ogola89 • 10
0
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40
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0
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Should I use the same reference file for alignment and variant calling?
software error genome alignment written 1 day ago by qhtjrmin • 0
1
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1
answer
41
views
1
answer
Read counts for peak file
alignment rna-seq written 1 day ago by Romylland • 0 • updated 1 day ago by ATpoint ♦ 44k
3
votes
2
answers
72
views
2
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remove mitochondrial reads using Bowtie2
alignment written 3 days ago by pt.taklifi • 60 • updated 3 days ago by Antonio R. Franco • 4.5k
0
votes
0
answers
81
views
0
answers
How to covert fasta file into pandas dataframe with parallel running python script?
alignment written 3 days ago by sunyeping • 30
0
votes
0
answers
56
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0
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Tool: GMAP gff wrong direction of transcripts?
assembly alignment tool rna-seq written 3 days ago by maria • 0
0
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0
answers
64
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0
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How to use samtools faidx
gene alignment written 3 days ago by florian.grosmaire • 0
0
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1
answer
77
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1
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How to add the amount of conservation (*);(:);(.) to an established multiple sequences alignment?
conservation alignment msa written 4 days ago by cornflower.9aceeb • 0 • updated 3 days ago by Mensur Dlakic • 8.4k
3
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0
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144
views
0
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How to confirm if VCF file is normalized and Left aligned ?
vcf normalization alignment bcftools ukbb written 4 days ago by vaibhash • 0
3
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1
answer
60
views
1
answer
Message Error : Blastdbcmd
gene sequence alignment written 5 days ago by florian.grosmaire • 0 • updated 5 days ago by GenoMax ♦ 95k
0
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0
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62
views
0
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Error in Blast+
alignment sequence written 5 days ago by a.mostafa5050 • 0
6
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1
answer
81
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5 follow
1
answer
How to Run IGV on Linux Remote Machine
alignment rna-seq sequencing written 6 days ago by Aynur • 40 • updated 6 days ago by i.sudbery ♦ 10k
1
vote
1
answer
71
views
1
answer
Module trait association in wgcna
assembly alignment rna-seq R written 6 days ago by guliasitu40 • 80 • updated 6 days ago by Kevin Blighe ♦ 69k
2
votes
2
answers
69
views
2
answers
How can I visualize the Pileup to determine if there is a 5 BP deletion?
genome sequence alignment sequencing written 7 days ago by screadore • 0 • updated 7 days ago by Kevin Blighe ♦ 69k
0
votes
1
answer
49
views
1
answer
IGV pop up file interpretation
alignment written 8 days ago by wes • 40 • updated 8 days ago by Pierre Lindenbaum ♦ 133k
0
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0
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55
views
0
answers
Human contamination in Chimpanzee or Bonobo data
next-gen alignment contamination sequencing written 8 days ago by rah • 20
2
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1
answer
86
views
1
answer
Blast + Alignement Shell Script
blast tutorial alignment script shell written 8 days ago by florian.grosmaire • 0 • updated 8 days ago by brian.fristensky • 140
2
votes
1
answer
136
views
1
answer
What is the difference between Average Nucleotide Identity (ANI) and blastn analysis?
sequence bioinformatics alignment blast written 8 days ago by Kumar • 40
0
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0
answers
70
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0
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how to interpret htseq output
gene assembly alignment rna-seq sequencing written 9 days ago by javad.sadeghi1 • 0 • updated 9 days ago by rpolicastro ♦ 3.3k
0
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0
answers
51
views
0
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Pairwise2 Gap penalty function for insertion errors
python alignment biopython sequencing written 9 days ago by trinityduke100 • 10
11
votes
1
answer
133
views
1
answer
K-mer sequencing vs sequence-alignment
k-mer next-gen tutorial alignment short-reads written 9 days ago by GoldenRetriever • 40 • updated 9 days ago by ATpoint ♦ 44k
0
votes
0
answers
54
views
0
answers
how treat FLAG 16 in ribosome footprint
alignment written 10 days ago by dwc06631 • 0
2
votes
0
answers
80
views
0
answers
should each RNA-seq has Circular RNA?
ciri2 alignment circular rna rna-seq written 11 days ago by modarzi • 140
1
vote
1
answer
108
views
1
answer
map subsetByOverlaps back to input coordinates
genome alignment written 11 days ago by brtawe • 0 • updated 11 days ago by rpolicastro ♦ 3.3k
1
vote
0
answers
89
views
0
answers
Merging bowtie output
bowtie2 fastq alignment bowtie assembly written 11 days ago by Sbrillo • 0
0
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1
answer
115
views
1
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Pairwise2 Alignment Gap Penalties
python alignment biopython sequencing written 12 days ago by trinityduke100 • 10 • updated 11 days ago by Mark • 860
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