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<prev • 4,702 results • page 1 of 157 • next >
105
votes
8
answers
39k
views
50 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 7.9 years ago by Matthieu • 430 • updated 3.1 years ago by alexisdereeper • 30
55
votes
6
answers
37k
views
29 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 7.2 years ago by Ric • 140 • updated 7.2 years ago by Ketil ♦ 3.9k
75
votes
5
answers
24k
views
27 follow
5
answers
Star Or Tophat?
rnaseq tophat alignment written 5.3 years ago by lkmklsmn • 870 • updated 5.0 years ago by super • 60
92
votes
15
answers
31k
views
26 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 8.7 years ago by User 1586 • 270 • updated 10 months ago by endrebak • 740
37
votes
5
answers
24k
views
23 follow
5
answers
How to extract unique mapped results from Bowtie2 bam results?
alignment written 4.9 years ago by zhwjmch • 70 • updated 2.9 years ago by merodev • 140
72
votes
5
answers
12k
views
22 follow
5
answers
Tutorial: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs alignment tutorial bwa written 6.2 years ago by lh3 ♦ 31k • updated 6.1 years ago by pan.alexiou • 10
35
votes
3
answers
1.6k
views
21 follow
3
answers
Tutorial: Which human reference genome should I use?
genome assembly tutorial alignment written 6 months ago by finswimmer ♦ 11k
34
votes
1
answer
11k
views
18 follow
1
answer
bash loop for alignment RNA-seq data
next-gen alignment rna-seq written 5.0 years ago by Paul • 1.3k • updated 17 months ago by parmarsachinsingh • 0
68
votes
5
answers
8.6k
views
16 follow
5
answers
What Should I Use Blat For?
alignment written 6.4 years ago by KCC • 3.9k • updated 6.4 years ago by David Quigley ♦ 11k
36
votes
7
answers
1.3k
views
16 follow
7
answers
Forum: Survey/Vote: If you could double the speed of any three commandline tools, which three would they be?
next-gen forum sequencing alignment rna-seq blast written 17 months ago by dhbradshaw • 130 • updated 17 months ago by Puli Chandramouli Reddy • 150
18
votes
1
answer
498
views
16 follow
1
answer
Forum: Review of the CIGAR string format
forum alignment written 5 months ago by Juke-34 • 2.1k
55
votes
1
answer
1.1k
views
16 follow
1
answer
Forum: Best RNA-Seq aligner: A comparison of mapping tools
genome forum ngs alignment rna-seq sequence written 12 weeks ago by David Langenberger ♦ 8.7k
32
votes
3
answers
7.3k
views
15 follow
3
answers
Which Aligners Recognize Soft-Masked Repeats In Reference Sequences?
alignment written 8.5 years ago by Jeremy Leipzig ♦ 18k • updated 6.0 years ago by Ali R. Vahdati • 190
14
votes
2
answers
2.9k
views
15 follow
2
answers
Best tool for variant calling
genome alignment next-gen snp written 11 months ago by williamsbrian5064 • 160 • updated 5 months ago by claire • 0
38
votes
6
answers
7.8k
views
14 follow
6
answers
Multiple Sequence Alignment For Cdnas
alignment cdna clustalw multiple written 8.6 years ago by Haibao Tang ♦ 3.0k • updated 3.0 years ago by kissaj • 90
15
votes
6
answers
6.0k
views
14 follow
6
answers
A Question About The Sam Entry For A Query Aligned To Multiple Places
format alignment sam bowtie multiple written 7.1 years ago by Tianyang Li • 490 • updated 7.0 years ago by Xianjun • 240
27
votes
1
answer
4.5k
views
14 follow
1
answer
Grch38 And Reference Alignment
alignment human written 5.2 years ago by aniketd86 • 150 • updated 5.2 years ago by deanna.church • 1.1k
37
votes
8
answers
3.7k
views
13 follow
8
answers
Quick Programming Challenge: How Do I Calculate Reference Coverage From A Table Of Alignment Starts And Ends?
alignment code programming written 9.0 years ago by Jeremy Leipzig ♦ 18k • updated 7 months ago by RamRS ♦ 21k
33
votes
5
answers
5.8k
views
13 follow
5
answers
Should I Strip Alignment Columns Before Making A Tree?
phylogenetics alignment tree written 8.1 years ago by John • 750 • updated 5.7 years ago by Biostar ♦♦ 20
16
votes
2
answers
4.8k
views
13 follow
2
answers
How Do I Align More Than Five Long Dna Scaffolds (Contigs) To The Reference Gene?
pairwise alignment reference written 5.2 years ago by biostar • 150 • updated 3.6 years ago by Darked89 ♦ 4.2k
10
votes
5
answers
10k
views
13 follow
5
answers
Finding a sequence in a fasta file
sequence alignment written 4.9 years ago by mbk0asis • 410 • updated 4.9 years ago by PoGibas ♦ 4.8k
37
votes
6
answers
6.6k
views
12 follow
6
answers
Best Spliced Aligner To Human Genome With Limited Rna-Seq Reads
splicing alignment rna written 8.8 years ago by Wjeck • 480 • updated 8.5 years ago by Zee • 40
32
votes
3
answers
8.3k
views
12 follow
3
answers
Any Hardware Recommendations For A Molecular Biology Lab That'S Getting Into Bioinformatics?
next-gen cloud chip-seq sequencing alignment hardware written 8.7 years ago by Colin • 120 • updated 8.7 years ago by jvijai • 1.1k
18
votes
2
answers
7.8k
views
12 follow
2
answers
When Aligning Mirna (Micro Rna) What Reference Is Better? (Whole Genome Or Mirbase)
alignment reference mirna written 8.5 years ago by Doctoroots • 760 • updated 2.2 years ago by enxxx23 • 210
38
votes
2
answers
5.1k
views
12 follow
2
answers
Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score does not seem to do the trick in my case)
next-gen alignment bwa written 22 months ago by betsy.s.collins • 110 • updated 22 months ago by John ♦ 12k
38
votes
6
answers
11k
views
11 follow
6
answers
Pairwise Genome Alignment
pairwise genome alignment written 8.4 years ago by Andrea_Bio • 2.5k • updated 7.6 years ago by Larry_Parnell ♦ 16k
22
votes
5
answers
9.1k
views
11 follow
5
answers
Bam : Extract Only Alignment With A Specific Length
alignment extraction length rna bam written 7.6 years ago by Nicolas Rosewick ♦ 7.5k • updated 7.6 years ago by Marvin • 840
13
votes
5
answers
3.0k
views
11 follow
5
answers
An Alternative To Blastx With Speed Similar To Bowtie
nucleotide alignment protein blast bowtie written 7.2 years ago by Tianyang Li • 490 • updated 6 months ago by h.mon ♦ 24k
18
votes
10
answers
3.8k
views
11 follow
10
answers
Manual Msa Editor
alignment multiple written 7.1 years ago by Arjen Ten Have • 340 • updated 2.9 years ago by Suzanne • 50
20
votes
5
answers
5.3k
views
11 follow
5
answers
Aligning One Protein Sequence With A Multiple Sequence Alignment
sequence alignment multiple msa written 6.9 years ago by Reyhaneh • 480 • updated 20 months ago by kamr100200 • 0
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