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109
votes
8
answers
41k
views
54 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 9.5 years ago by Matthieu460 • updated 4.6 years ago by alexisdereeper30
48
votes
3
answers
5.5k
views
34 follow
3
answers
57
votes
6
answers
42k
views
32 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 8.8 years ago by Ric160 • updated 8.8 years ago by Ketil4.0k
30
votes
2
answers
7.3k
views
32 follow
2
answers
Best tool for variant calling
genome alignment next-gen snp written 2.4 years ago by williamsbrian5064260 • updated 23 months ago by claire0
43
votes
5
answers
29k
views
29 follow
5
answers
How to extract unique mapped results from Bowtie2 bam results?
alignment written 6.4 years ago by zhwjmch100 • updated 4.4 years ago by merodev140
94
votes
15
answers
33k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 10.2 years ago by User 1586280 • updated 2.4 years ago by endrebak840
75
votes
5
answers
27k
views
27 follow
5
answers
Star Or Tophat?
rnaseq tophat alignment written 6.8 years ago by lkmklsmn930 • updated 6.5 years ago by super60
68
votes
3
answers
5.8k
views
24 follow
3
answers
72
votes
5
answers
13k
views
22 follow
5
answers
Tutorial: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs alignment tutorial bwa written 7.7 years ago by lh332k • updated 7.6 years ago by pan.alexiou10
84
votes
2
answers
9.9k
views
19 follow
2
answers
Alignment and mapping
alignment next-gen mapping written 4.6 years ago by statfa530 • updated 4.6 years ago by Benn8.0k
35
votes
1
answer
16k
views
18 follow
1
answer
bash loop for alignment RNA-seq data
next-gen alignment rna-seq written 6.5 years ago by Paul1.4k • updated 3.0 years ago by parmarsachinsingh0
68
votes
5
answers
9.8k
views
16 follow
5
answers
What Should I Use Blat For?
alignment written 7.9 years ago by KCC4.0k • updated 7.9 years ago by David Quigley11k
36
votes
7
answers
1.6k
views
16 follow
7
answers
18
votes
1
answer
1.4k
views
16 follow
1
answer
Forum: Review of the CIGAR string format
forum alignment written 2.0 years ago by Juke344.8k
55
votes
1
answer
6.8k
views
16 follow
1
answer
32
votes
3
answers
8.7k
views
15 follow
3
answers
Which Aligners Recognize Soft-Masked Repeats In Reference Sequences?
alignment written 10.0 years ago by Jeremy Leipzig19k • updated 7.6 years ago by Ali R. Vahdati190
22
votes
2
answers
9.5k
views
15 follow
2
answers
12
votes
5
answers
14k
views
15 follow
5
answers
Finding a sequence in a fasta file
sequence alignment written 6.4 years ago by mbk0asis570 • updated 6.4 years ago by PoGibas4.8k
38
votes
6
answers
9.1k
views
14 follow
6
answers
Multiple Sequence Alignment For Cdnas
alignment cdna clustalw multiple written 10.1 years ago by Haibao Tang3.0k • updated 4.5 years ago by kissaj100
15
votes
6
answers
6.9k
views
14 follow
6
answers
11
votes
3
answers
13k
views
14 follow
3
answers
How To Use Coordinates In Order To Extract Sequences In Fasta File?
genome fasta alignment written 7.1 years ago by srpatel14420 • updated 5.1 years ago by syxbestmayer10
27
votes
1
answer
5.2k
views
14 follow
1
answer
Grch38 And Reference Alignment
alignment human written 6.7 years ago by aniketd86150 • updated 6.7 years ago by deanna.church1.1k
16
votes
0
answers
8.4k
views
14 follow
0
answers
STAR align multiple files
alignment chip-seq star rna-seq written 3.1 years ago by ta_awwad280 • updated 2.5 years ago by Bog20
37
votes
8
answers
4.2k
views
13 follow
8
answers
33
votes
5
answers
6.6k
views
13 follow
5
answers
Should I Strip Alignment Columns Before Making A Tree?
phylogenetics alignment tree written 9.6 years ago by John770 • updated 7.2 years ago by Biostar ♦♦ 20
16
votes
2
answers
5.7k
views
13 follow
2
answers
23
votes
1
answer
5.1k
views
13 follow
1
answer
Genotyping, genotype calling or SNP calling?
alignment snp written 3.0 years ago by James Reeve100 • updated 3.0 years ago by Kevin Blighe66k
13
votes
2
answers
5.7k
views
13 follow
2
answers
bwa mem and multiply mapped reads
alignment bwa repetitive genome written 2.6 years ago by lfreeborn10 • updated 2.6 years ago by dariober11k
37
votes
6
answers
7.0k
views
12 follow
6
answers
Best Spliced Aligner To Human Genome With Limited Rna-Seq Reads
splicing alignment rna written 10.3 years ago by Wjeck480 • updated 10.0 years ago by Zee40
32
votes
3
answers
9.2k
views
12 follow
3
answers
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