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<prev • 4,438 results • page 1 of 148 • next >
103
votes
8
answers
38k
views
48 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 7.7 years ago by Matthieu • 410 • updated 2.8 years ago by alexisdereeper • 30
75
votes
5
answers
24k
views
27 follow
5
answers
Star Or Tophat?
rnaseq tophat alignment written 5.0 years ago by lkmklsmn • 860 • updated 4.7 years ago by super • 50
92
votes
15
answers
30k
views
26 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 8.4 years ago by User 1586 • 270 • updated 7 months ago by endrebak • 690
50
votes
6
answers
36k
views
24 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 7.0 years ago by Ric • 100 • updated 7.0 years ago by Ketil ♦ 3.9k
72
votes
5
answers
12k
views
22 follow
5
answers
Tutorial: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs alignment tutorial bwa written 5.9 years ago by lh3 ♦ 31k • updated 5.8 years ago by pan.alexiou • 10
35
votes
5
answers
23k
views
22 follow
5
answers
How to extract unique mapped results from Bowtie2 bam results?
alignment written 4.7 years ago by zhwjmch • 70 • updated 2.6 years ago by merodev • 140
34
votes
1
answer
10k
views
18 follow
1
answer
bash loop for alignment RNA-seq data
next-gen alignment rna-seq written 4.8 years ago by Paul • 1.2k • updated 14 months ago by parmarsachinsingh • 0
31
votes
3
answers
919
views
17 follow
3
answers
Tutorial: Which human reference genome should I use?
genome assembly tutorial alignment written 3 months ago by finswimmer ♦ 8.9k
68
votes
5
answers
8.4k
views
16 follow
5
answers
What Should I Use Blat For?
alignment written 6.1 years ago by KCC • 3.9k • updated 6.1 years ago by David Quigley ♦ 11k
36
votes
7
answers
1.1k
views
16 follow
7
answers
Forum: Survey/Vote: If you could double the speed of any three commandline tools, which three would they be?
next-gen forum sequencing alignment rna-seq blast written 14 months ago by dhbradshaw • 130 • updated 14 months ago by Puli Chandramouli Reddy • 150
18
votes
1
answer
347
views
16 follow
1
answer
Forum: Review of the CIGAR string format
forum alignment written 12 weeks ago by Juke-34 • 1.7k
32
votes
3
answers
7.1k
views
15 follow
3
answers
Which Aligners Recognize Soft-Masked Repeats In Reference Sequences?
alignment written 8.2 years ago by Jeremy Leipzig ♦ 18k • updated 5.8 years ago by Ali R. Vahdati • 190
38
votes
6
answers
7.5k
views
14 follow
6
answers
Multiple Sequence Alignment For Cdnas
alignment cdna clustalw multiple written 8.3 years ago by Haibao Tang ♦ 3.0k • updated 2.7 years ago by kissaj • 80
15
votes
6
answers
5.8k
views
14 follow
6
answers
A Question About The Sam Entry For A Query Aligned To Multiple Places
format alignment sam bowtie multiple written 6.8 years ago by Tianyang Li • 490 • updated 6.8 years ago by Xianjun • 240
27
votes
1
answer
4.4k
views
14 follow
1
answer
Grch38 And Reference Alignment
alignment human written 4.9 years ago by aniketd86 • 150 • updated 4.9 years ago by deanna.church • 1.1k
37
votes
8
answers
3.7k
views
13 follow
8
answers
Quick Programming Challenge: How Do I Calculate Reference Coverage From A Table Of Alignment Starts And Ends?
alignment code programming written 8.7 years ago by Jeremy Leipzig ♦ 18k • updated 4 months ago by RamRS ♦ 20k
33
votes
5
answers
5.7k
views
13 follow
5
answers
Should I Strip Alignment Columns Before Making A Tree?
phylogenetics alignment tree written 7.8 years ago by John • 750 • updated 5.4 years ago by Biostar ♦♦ 20
16
votes
2
answers
4.6k
views
13 follow
2
answers
How Do I Align More Than Five Long Dna Scaffolds (Contigs) To The Reference Gene?
pairwise alignment reference written 5.0 years ago by biostar • 150 • updated 3.3 years ago by Darked89 ♦ 4.2k
10
votes
5
answers
9.7k
views
13 follow
5
answers
Finding a sequence in a fasta file
sequence alignment written 4.6 years ago by mbk0asis • 390 • updated 4.6 years ago by PoGibas ♦ 4.7k
37
votes
6
answers
6.5k
views
12 follow
6
answers
Best Spliced Aligner To Human Genome With Limited Rna-Seq Reads
splicing alignment rna written 8.6 years ago by Wjeck • 480 • updated 8.2 years ago by Zee • 20
32
votes
3
answers
8.1k
views
12 follow
3
answers
Any Hardware Recommendations For A Molecular Biology Lab That'S Getting Into Bioinformatics?
next-gen cloud chip-seq sequencing alignment hardware written 8.4 years ago by Colin • 120 • updated 8.4 years ago by jvijai • 1.1k
38
votes
2
answers
4.4k
views
12 follow
2
answers
Obtaining uniquely mapped reads from BWA mem alignment (filtering by q score does not seem to do the trick in my case)
next-gen alignment bwa written 19 months ago by betsy.s.collins • 110 • updated 19 months ago by John ♦ 12k
38
votes
6
answers
11k
views
11 follow
6
answers
Pairwise Genome Alignment
pairwise genome alignment written 8.2 years ago by Andrea_Bio • 2.5k • updated 7.4 years ago by Larry_Parnell ♦ 16k
22
votes
5
answers
8.8k
views
11 follow
5
answers
Bam : Extract Only Alignment With A Specific Length
alignment extraction length rna bam written 7.3 years ago by Nicolas Rosewick ♦ 7.2k • updated 7.3 years ago by Marvin • 840
13
votes
5
answers
2.9k
views
11 follow
5
answers
An Alternative To Blastx With Speed Similar To Bowtie
nucleotide alignment protein blast bowtie written 7.0 years ago by Tianyang Li • 490 • updated 3 months ago by h.mon ♦ 22k
18
votes
10
answers
3.7k
views
11 follow
10
answers
Manual Msa Editor
alignment multiple written 6.9 years ago by Arjen Ten Have • 340 • updated 2.7 years ago by Suzanne • 50
20
votes
5
answers
5.0k
views
11 follow
5
answers
Aligning One Protein Sequence With A Multiple Sequence Alignment
sequence alignment multiple msa written 6.6 years ago by Reyhaneh • 480 • updated 17 months ago by kamr100200 • 0
9
votes
3
answers
10k
views
11 follow
3
answers
How To Use Coordinates In Order To Extract Sequences In Fasta File?
genome fasta alignment written 5.4 years ago by srpatel144 • 10 • updated 3.3 years ago by syxbestmayer • 0
12
votes
3
answers
1.4k
views
11 follow
3
answers
Converting BAM to Fastq - losing reads
alignment written 10 months ago by adampennycuick • 130 • updated 10 months ago by h.mon ♦ 22k
18
votes
6
answers
1.1k
views
11 follow
6
answers
How to match genes of one file to another but in multiple columns
genome gene sequence alignment written 10 months ago by bweil2 • 10
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