Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 5,778 results • page 1 of 193 • next >
2
votes
1
answer
52
views
1
answer
genome assembly vs genome annotation
genome alignment rna-seq written 19 hours ago by Zeinab.mokhtar • 0 • updated 19 hours ago by lieven.sterck ♦ 8.0k
0
votes
0
answers
100
views
0
answers
Number of secondary alignments per read
bwa-mem alignment samtools bwa written 4 weeks ago by am3 • 70 • updated 22 hours ago by Biostar ♦♦ 20
0
votes
0
answers
48
views
0
answers
Distribution of multi mapped reads
alignment samtools rna-seq bam written 23 hours ago by biogrin • 0
0
votes
0
answers
28
views
0
answers
Better way for speedup of Humann3 metagenomics analysis pipeline?
humann metagenomics alignment pipeline written 1 day ago by boaty • 110
0
votes
1
answer
65
views
1
answer
Checking whether the reads aligned to specific gene have the specific exon in BAM file
alignment samtools rna-seq sequencing written 1 day ago by dh.han • 0 • updated 1 day ago by geek_y ♦ 11k
0
votes
0
answers
44
views
0
answers
Using magicblast for short sequences
genome alignment magicblast rna-seq blast written 3 days ago by goonerrn • 0 • updated 3 days ago by genomax ♦ 85k
0
votes
0
answers
37
views
0
answers
Samtools flagstat with sncRNA (single-end reads)
sequence alignment rna-seq written 4 days ago by morteza.aslanzadeh • 10
0
votes
0
answers
85
views
0
answers
targeted DNA sequencing
next-gen alignment dna-seq targeted sequencing written 6 days ago by Pettorato • 0
0
votes
1
answer
59
views
1
answer
Effects of applying BQSR twice?
qualityscores bqsr alignment sequencing written 5 days ago by Chris Miller ♦ 21k • updated 5 days ago by h.mon ♦ 30k
0
votes
1
answer
59
views
1
answer
Mapping reads to combined mouse and human genome
alignment star rna-seq written 5 days ago by biostarukha • 10 • updated 5 days ago by genomax ♦ 85k
2
votes
0
answers
184
views
0
answers
How to change sequence format in my alignment file?
sequence alignment written 5 weeks ago by Adam • 40 • updated 5 days ago by Biostar ♦♦ 20
2
votes
1
answer
101
views
1
answer
Bioinformatics basics-Protein sequence and its interpretation
alignment sequence written 8 weeks ago by sherlokhomes.sharma • 0 • updated 6 days ago by jared.andrews07 ♦ 6.2k
0
votes
1
answer
66
views
1
answer
How to find mapped regions in the reference genome
genome alignment longreads bwa sequencing written 6 days ago by Ashi • 0
0
votes
0
answers
56
views
0
answers
Difference between workflow and module in Nextflow?
alignment written 6 days ago by eternalshadowrose • 0
0
votes
0
answers
139
views
0
answers
STAR mapping_unstranded library
alignment written 6 weeks ago by ipalmisa • 10 • updated 6 days ago by Biostar ♦♦ 20
1
vote
1
answer
44
views
1
answer
Filtering repetitive element during mapping
alignment mapping rna-seq written 7 days ago by dahun73 • 10 • updated 7 days ago by JC ♦ 10k
0
votes
0
answers
36
views
0
answers
How to confirm NTC template contamination in WGS data?
genome next-gen alignment sequencing written 7 days ago by esha.joshi • 0
1
vote
0
answers
63
views
0
answers
Aligning two genomes
genome alignment written 7 days ago by Nicolas Carter • 10
2
votes
1
answer
62
views
1
answer
Differences between "gene prediction" vs. "transcript reconstruction"
assembly gene prediction alignment rna-seq written 7 days ago by ljason2020 • 0 • updated 7 days ago by lieven.sterck ♦ 8.0k
0
votes
0
answers
1.6k
views
0
answers
PAML(codeml) reading sequences EOF
sequence alignment written 3.4 years ago by Feng • 0 • updated 8 days ago by Biostar ♦♦ 20
2
votes
0
answers
1.2k
views
5 follow
0
answers
Command line to add algorithm option for MAFFT using GUIDANCE2
alignment bash written 2.3 years ago by NicoN64 • 20 • updated 9 days ago by milesdroberts • 0
3
votes
1
answer
68
views
1
answer
Downsample BAM file according to coverage
assembly alignment samtools written 9 days ago by nalesh_jadhav • 10 • updated 9 days ago by ATpoint ♦ 36k
0
votes
1
answer
103
views
1
answer
Is rsburead splice-aware? Should I use HISAT2, rsubread, or some other aligner?
R alignment rna-seq written 23 days ago by rezaeir75 • 10 • updated 9 days ago by kristoffer.vittingseerup • 3.3k
1
vote
1
answer
73
views
1
answer
Detection nucleotide changes in VCF file
linux next-gen alignment mutation vcl written 10 days ago by stan.aanhane • 30 • updated 10 days ago by Pierre Lindenbaum ♦ 129k
1
vote
1
answer
100
views
1
answer
Developing script that loops through multiple reference genomes...
genome gene alignment written 11 days ago by Ada • 0
2
votes
1
answer
1.5k
views
1
answer
PSSM (Position Specific Scoring Matrix) from NCBI convert to matrix format
alignment sequence written 16 months ago by gaiboyan23 • 20 • updated 11 days ago by genomax ♦ 85k
2
votes
2
answers
598
views
5 follow
2
answers
calculating abundance of metagenomes
assembly alignment written 11 months ago by biobiu • 120 • updated 11 days ago by colindaven • 2.3k
0
votes
0
answers
64
views
0
answers
Assemblers and tools for MetaGenome and Metatranscriptomcs analysis
assembly next-gen alignment written 11 days ago by glady • 260
1
vote
1
answer
61
views
1
answer
Syntax for samtools flagstat on multiple .bam files outputting to .txt file
alignment written 12 days ago by Ada • 0 • updated 12 days ago by khorms • 110
0
votes
0
answers
75
views
0
answers
minimap2: aligning ambigious sequence containing N to fastq reads.
gene alignment next-gen sequencing written 12 days ago by vnyksm • 10 • updated 12 days ago by genomax ♦ 85k
<prev • 5,778 results • page 1 of 193 • next >
Recent Votes
Recent Locations • All »
  • Israel, 1 minute ago
  • Brazil, 2 minutes ago
  • India, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1017 users visited in the last hour