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<prev • 6,020 results • page 1 of 201 • next >
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How to get the number of segregating sites from a multiple alignment?
sequence alignment sequencing written 1 day ago by Flávia Rogério • 0 • updated 1 day ago by RamRS ♦ 30k
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1
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bowtie2 using loop on bash with paired-ended reads
bowtie2 sequence alignment bash written 1 day ago by v.berriosfarias • 0 • updated 1 day ago by swbarnes2 ♦ 8.8k
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64
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Need Help designing a workflow
arg resistomes alignment sequencing written 2 days ago by ZBL • 0
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156
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5 follow
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Small RNA data analysis
alignment rna-seq written 5 weeks ago by jkkbuddika • 160 • updated 2 days ago by Biostar ♦♦ 20
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240
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How to get inserted bases using pysam pileup
next-gen alignment pysam bam written 5 months ago by va90 • 10 • updated 2 days ago by Lhl • 730
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blast+ v2.10.1. error Error: mdb_env_open: Cannot allocate memory
software error alignment sequencing written 2 days ago by MEITUO • 10 • updated 2 days ago by genomax ♦ 91k
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How represent isoforms in different tracks in a genome browser?
reads alignment salmon rna-seq isoform written 23 days ago by Bardt9 • 0 • updated 2 days ago by Biostar ♦♦ 20
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1
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54
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1
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How to calculate number of fragment and its coverage from BAM file?
genome bedtools alignment rna-seq written 3 days ago by star • 260
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73
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[Prokaryote] How to go from reads to counts given that there is no exon column in gtf file?
alignment rna-seq written 5 days ago by akibio • 0 • updated 4 days ago by Juke34 • 4.8k
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Quicker way to know if a SNV is involved in a mismatch alignment
cpickle python mismatch alignment dictionary written 5 days ago by MarVi • 20 • updated 5 days ago by JC ♦ 11k
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1
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415
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Visualising Roary Results
genome sequence alignment roary snp written 7 months ago by Fid_o • 20 • updated 5 days ago by herber4 • 0
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1
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66
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1
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Preventing alignment to new Splice Junctions with STAR
splice-junctions alignment sequence star written 6 days ago by MarVi • 20 • updated 5 days ago by benformatics • 2.0k
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78
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How to incorporate outgroup organism for a SNP based phylogeny?
genome sequence alignment snp assembly written 10 days ago by Dineshkumar K • 40
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1
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Clustalw Ignoring Custom Weight Matrix
matrix clustalw alignment written 8.0 years ago by interfect • 0 • updated 7 days ago by Biostar ♦♦ 20
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1
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111
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1
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Can we use the Gene Ontology database as a gold standard to test the performance of PSI-BLAST?
alignment sequencing written 7 days ago by radinms • 0 • updated 7 days ago by Mensur Dlakic • 6.9k
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61
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merging bam from two samples
alignment written 7 days ago by kanwarjag • 1.1k • updated 7 days ago by genomax ♦ 91k
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1
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480
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1
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extract annotation for mVISTA whole genome comparison
genome annotation alignment mvista written 20 months ago by slimane.khayi • 40 • updated 7 days ago by Michael G • 50
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48
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Finding conserved operons between bacterial genomes - beginner
genome alignment written 7 days ago by cauawest • 0
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gatk haplotypecaller report a mush lower coverage than seen in alignment
haplotypecaller gatk alignment dp coverage written 7 days ago by mark.rose • 40
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3
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How to remove fasta headers in a multifasta file and write file name as a fasta header?
gene genome next-gen sequence alignment written 7 days ago by Dineshkumar K • 40 • updated 7 days ago by Joe ♦ 18k
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49
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strip positions in alignment
R sequence alignment written 7 days ago by mariya_s • 0
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Is rsubread splice-aware? Should I use HISAT2, rsubread, or some other aligner?
R alignment rsubread rna-seq written 4 months ago by rezaeir75 • 10 • updated 9 days ago by ATpoint ♦ 40k
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173
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Read Coverage Plot per Nucleotide of a Gene
R galaxy rna-seq alignment written 6 weeks ago by mayukh.flip22 • 0 • updated 9 days ago by Biostar ♦♦ 20
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1
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117
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1
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Biopython pairwise sequence alignment behavior change between 1.59 and 1.76
software error alignment sequence written 20 days ago by sanner • 20
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113
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Why do I see 3-nucleotide periodicity in RNA-Seq?
alignment next-gen rna-seq sequencing written 10 days ago by Apex92 • 20
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6 follow
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Sequence alignment help: BWA is not my friend!
next-gen alignment written 6.4 years ago by ab.tsubaki • 50 • updated 10 days ago by Biostar ♦♦ 20
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77
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How percentage of identity is calculated ?
alignment written 11 days ago by doinelpierrot • 0
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79
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Counting the number of Guanine bases between certain points in a sequence (FASTA file)
sequence alignment mega sequencing written 11 days ago by shedges.49 • 0
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Bizarre CIGAR string
alignment next-gen sequencing written 11 days ago by 2nelly • 220
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1
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232
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1
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TLEN value is negative for both paired reads
alignment written 5 months ago by nmargu • 0 • updated 11 days ago by Sam • 50
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