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bowtie2 using loop on bash with paired-ended reads
bowtie2 sequence alignment bash written 1 day ago by v.berriosfarias0 • updated 1 day ago by swbarnes28.8k
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Small RNA data analysis
alignment rna-seq written 5 weeks ago by jkkbuddika160 • updated 2 days ago by Biostar ♦♦ 20
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How to get inserted bases using pysam pileup
next-gen alignment pysam bam written 5 months ago by va9010 • updated 2 days ago by Lhl730
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How represent isoforms in different tracks in a genome browser?
reads alignment salmon rna-seq isoform written 23 days ago by Bardt90 • updated 2 days ago by Biostar ♦♦ 20
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Visualising Roary Results
genome sequence alignment roary snp written 7 months ago by Fid_o20 • updated 5 days ago by herber40
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Preventing alignment to new Splice Junctions with STAR
splice-junctions alignment sequence star written 6 days ago by MarVi20 • updated 5 days ago by benformatics2.0k
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Clustalw Ignoring Custom Weight Matrix
matrix clustalw alignment written 8.0 years ago by interfect0 • updated 7 days ago by Biostar ♦♦ 20
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merging bam from two samples
alignment written 7 days ago by kanwarjag1.1k • updated 7 days ago by genomax91k
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extract annotation for mVISTA whole genome comparison
genome annotation alignment mvista written 20 months ago by slimane.khayi40 • updated 7 days ago by Michael G50
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Read Coverage Plot per Nucleotide of a Gene
R galaxy rna-seq alignment written 6 weeks ago by mayukh.flip220 • updated 9 days ago by Biostar ♦♦ 20
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Sequence alignment help: BWA is not my friend!
next-gen alignment written 6.4 years ago by ab.tsubaki50 • updated 10 days ago by Biostar ♦♦ 20
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Bizarre CIGAR string
alignment next-gen sequencing written 11 days ago by 2nelly220
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TLEN value is negative for both paired reads
alignment written 5 months ago by nmargu0 • updated 11 days ago by Sam50
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