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Tophat / output without XS
alignment rna-seq written 6 weeks ago by Latifa0 • updated 57 minutes ago by Biostar ♦♦ 20
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genome assembly vs genome annotation
genome alignment rna-seq written 21 hours ago by Zeinab.mokhtar0 • updated 21 hours ago by lieven.sterck8.0k
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Number of secondary alignments per read
bwa-mem alignment samtools bwa written 4 weeks ago by am370 • updated 1 day ago by Biostar ♦♦ 20
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Using magicblast for short sequences
genome alignment magicblast rna-seq blast written 3 days ago by goonerrn0 • updated 3 days ago by genomax85k
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Effects of applying BQSR twice?
qualityscores bqsr alignment sequencing written 5 days ago by Chris Miller21k • updated 5 days ago by h.mon30k
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Mapping reads to combined mouse and human genome
alignment star rna-seq written 5 days ago by biostarukha10 • updated 5 days ago by genomax85k
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How to change sequence format in my alignment file?
sequence alignment written 5 weeks ago by Adam40 • updated 5 days ago by Biostar ♦♦ 20
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STAR mapping_unstranded library
alignment written 7 weeks ago by ipalmisa10 • updated 7 days ago by Biostar ♦♦ 20
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Filtering repetitive element during mapping
alignment mapping rna-seq written 7 days ago by dahun7310 • updated 7 days ago by JC10k
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PAML(codeml) reading sequences EOF
sequence alignment written 3.4 years ago by Feng0 • updated 8 days ago by Biostar ♦♦ 20
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Command line to add algorithm option for MAFFT using GUIDANCE2
alignment bash written 2.3 years ago by NicoN6420 • updated 9 days ago by milesdroberts0
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Downsample BAM file according to coverage
assembly alignment samtools written 9 days ago by nalesh_jadhav10 • updated 9 days ago by ATpoint36k
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Detection nucleotide changes in VCF file
linux next-gen alignment mutation vcl written 10 days ago by stan.aanhane30 • updated 10 days ago by Pierre Lindenbaum129k
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PSSM (Position Specific Scoring Matrix) from NCBI convert to matrix format
alignment sequence written 16 months ago by gaiboyan2320 • updated 11 days ago by genomax85k
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calculating abundance of metagenomes
assembly alignment written 11 months ago by biobiu120 • updated 11 days ago by colindaven2.3k
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