alignment Posts

C: Fasta length count format by baurumon • 10
i asked my colleague to install seqkit but it going to take time. is there any way to do it with...
C: FetureCounts low assigned rate and its weird total number counts? by Arindam Ghosh • 160
If " reads map to other parts of the genome (introns, intergenic)" should I remove the sample fro...
A: TCGA CNV data - immensely different results depending on data source by Kevin Blighe ♦ 46k
From what I understand, the data on the GDC itself (which TCGAbiolinks uses) is just the segmente...
C: Extremely low assigned reads in featureCounts by Arindam Ghosh • 160
if "many reads align outside of coding regions" should I proceed with what ever counts I get or s...
C: TCGA maf to vcf file conversion by Kevin Blighe ♦ 46k
You will generate the FAM file on your own, by studying how it is structured: https://www.cog-gen...
A: Bioinformatics and biotechnology market in future. by i.sudbery ♦ 5.2k
The important part of a bioinformatic scientist job is the science, not the bioinformatics. If yo...
C: Get cDNA sequences from NCBI for given protein IDs by Sej Modha ♦ 4.3k
I'd suggest writing a `for` loop to process each ID separately.
C: Pipeline for SNP analysis by Kevin Blighe ♦ 46k
> which pacakage we should use for SNP analysis in R? What do you mean? - you have not really...
C: Get cDNA sequences from NCBI for given protein IDs by Chirag Parsania • 1.5k
Bingo... !! How to give file containing several Ids instead of just one id
C: Get cDNA sequences from NCBI for given protein IDs by Sej Modha ♦ 4.3k
You could get all CDS associated with the nucleotide record and filter the fasta file for sequenc...
C: Fix dash/empty ALT alleles for deletions in VCF by RamRS ♦ 23k
These are different VCF formats - the first is quite old (3.x). There could be something to conve...
C: non conversion rate in BS-sq by Sej Modha ♦ 4.3k
https://www.biostars.org/p/357878/

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1603 users visited in the last hour