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Tophat / output without XS

alignment rna-seq written 6 weeks ago by Latifa • 0 • updated 16 minutes ago by Biostar ♦♦ 20

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BBMap Statistics Evaluation

gene assembly alignment sequencing written 46 minutes ago by Ada • 0

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genome assembly vs genome annotation

genome alignment rna-seq written 21 hours ago by Zeinab.mokhtar • 0 • updated 21 hours ago by lieven.sterck ♦ 8.0k

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Recent Replies

A: How to used extraction above 90% identity with blastp? by Asaf ♦ 8.1k
The third column of your output file is the percent identity (`pident`), you can use awk to filte...
A: Fasta Files - How to search for peptide sequences? by Alex Nesmelov • 90
Hi! If you put sequences of peptides of interest into a vector like `peptides_vector = c("DAIPAVE...
C: meaning of CheckM output by Asaf ♦ 8.1k
Exactly. CheckM couldn't assign this genome into a lower level of taxonomy, potentially because i...
C: Fasta Files - How to search for peptide sequences? by cpad0112 ♦ 13k
Use zero length assertions in R. Without zero length assertions: # Protein sequences used in...
A: p value from multiple columns using R?? by Sam • 2.9k
Using data.table (assuming your data is called dt), you can do a t.test on each row with the foll...
C: igvtools count | wigToBigWig, pipe not working for some reason although stdout a by jennxyzhang • 0
Thank you very very much for your suggestions! Unfortunately I'm still getting that same pop up ...
C: Want to create a new Index file for BAM using SAMTOOLS. Do I need to sort the de by Umesh • 0
![enter image description here][1]I've uploaded the result which i get after the command, but i a...
C: Transcriptome analysis of two closely related plant species by Istvan Albert ♦♦ 84k
I would look into the concept called transcript integrity (TIN) to evaluate how well do the reads...
C: meaning of CheckM output by zhangdengwei • 60
Asaf, may I ask one more question? What's the meaning of `Marker lineage`? Based on my understand...
C: Definition of + and - strands for human genome by genomax ♦ 85k
See: https://www.biostars.org/p/3908/
C: UCSC Xena Probe to Gene mapping by RamRS ♦ 27k
I’ve found that in many cases where a single ENSG ID corresponds to multiple HGNC symbols, only o...
C: Definition of + and - strands for human genome by RamRS ♦ 27k
Check out this Wikipedia entry (the first result in googling “plus strand”): https://en.wikipedia...

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