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Creation of subset of diamond database

alignment written 19 hours ago by mark.bogen • 0 • updated 16 hours ago by buchfink • 140

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How to convert bam to fasta

alignment next-gen sequencing written 18 hours ago by rijithraj • 0 • updated 18 hours ago by GenoMax ♦ 95k

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Recent Replies

A: How to convert BED file of ATAC seq to Bigwig file by ATpoint ♦ 44k
This is not possible. Bigwigs are based on BED files with scores which you do not have. You only ...
C: accessing the global gut microbial gene catalogue (MEDUSA) by GenoMax ♦ 95k
Your best bet is to email the Metabolic Atlas group using the email [shown on their page][1]. ...
C: Principle component analysis using VCF file as input. by sayyarsehrish • 0
I have searched at but not find a solution. as my psm file have no information about sex(male, fe...
C: Annotating two columns at the same time by GenoMax ♦ 95k
https://www.biostars.org/u/42731/ : Not sure why you need it done at the same time. To remove red...
A: What is a HaploContig by lieven.sterck ♦ 9.5k
from the top of my head: that would indicate a contig that is assigned to a specific haplotype. T...
C: deeptools plotHeatmap gives blurry pixelated image by GenoMax ♦ 95k
Please post your solution as an answer and accept it (greencheck mark) to provide closure to this...
A: dbNSFP VEP plugin and tabix query give different results by Emily_Ensembl ♦ 21k
We're not familiar with the R package you're using with tabix. Could you try running tabix direct...
C: Question : How to read this kind of Stand Alone BLAST Formatted File? by GenoMax ♦ 95k
It is not easily parsable but one could. You would want to try `-outfmt 6` (or 7) ([LINK][1]). If...
C: Question : How to read this kind of Stand Alone BLAST Formatted File? by lieven.sterck ♦ 9.5k
goh, not parseable is a bit strong I would say, but it clearly is difficult and perhaps not even ...
C: How to convert BED file of ATAC seq to Bigwig file by Pierre Lindenbaum ♦ 133k
https://www.biostars.org/p/150036/
C: Question : How to read this kind of Stand Alone BLAST Formatted File? by BiomedicalTissueIng • 0
From what I read from https://open.oregonstate.education/computationalbiology/chapter/command-lin...
C: Question : How to read this kind of Stand Alone BLAST Formatted File? by lieven.sterck ♦ 9.5k
No, it is not. What it returned, as in the result you posted, is the default blast output (== Pa...

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