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105
votes
8
answers
39k
views
50 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 7.9 years ago by Matthieu430 • updated 3.1 years ago by alexisdereeper30
55
votes
6
answers
37k
views
29 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 7.2 years ago by Ric140 • updated 7.2 years ago by Ketil3.9k
92
votes
15
answers
31k
views
26 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 8.7 years ago by User 1586270 • updated 10 months ago by endrebak740
75
votes
5
answers
24k
views
27 follow
5
answers
Star Or Tophat?
rnaseq tophat alignment written 5.3 years ago by lkmklsmn870 • updated 5.0 years ago by super60
37
votes
5
answers
24k
views
23 follow
5
answers
How to extract unique mapped results from Bowtie2 bam results?
alignment written 4.9 years ago by zhwjmch70 • updated 2.9 years ago by merodev140
10
votes
3
answers
21k
views
9 follow
3
answers
How To Interpret Gap Penalty For Sequence Alignment?
sequence alignment written 7.1 years ago by Shan50 • updated 7.1 years ago by Ari110
9
votes
2
answers
21k
views
6 follow
2
answers
Blast Help On Nucleotide Collection Nr/Nt
ncbi fasta alignment blast written 7.6 years ago by Matt40 • updated 7.6 years ago by Digiomics160
12
votes
1
answer
19k
views
1
answer
what is the difference between GRCh37 and hg19 ?
genome assembly alignment rna-seq written 4.3 years ago by jack750 • updated 12 months ago by gandrescabrera80
22
votes
4
answers
19k
views
5 follow
4
answers
What is SIFT-score?
next-gen alignment sequencing written 4.4 years ago by mangfu100680 • updated 3.4 years ago by r0ntu20
7
votes
4
answers
19k
views
6 follow
4
answers
Estimating Insert Size From Paired End Data.
picard paired-end alignment written 5.1 years ago by geek_y9.4k • updated 18 months ago by jmodlis0
15
votes
1
answer
18k
views
6 follow
1
answer
17
votes
8
answers
16k
views
6 follow
8
answers
how to unzip the files in batch?
next-gen alignment rna-seq snp written 3.9 years ago by flavobacteria40 • updated 11 months ago by saraholiver3070
19
votes
4
answers
15k
views
10 follow
4
answers
Bowtie Alignment And Low Percentage Of Mapped Reads
genome alignment bowtie written 6.8 years ago by samsara580 • updated 4.3 years ago by Leandro de Mattos90
13
votes
2
answers
15k
views
2
answers
hg38 annotation file (gtf) UCSC format
alignment rna-seq written 3.2 years ago by dina.hesham139120 • updated 2.2 years ago by inambioinfo90
21
votes
5
answers
14k
views
9 follow
5
answers
Number Of Reads In A Sam File Which Are Assigned To Each Chromosome?
alignment sam written 7.4 years ago by KCC3.9k • updated 18 months ago by Simply Bioinformatics130
13
votes
4
answers
14k
views
6 follow
4
answers
Bowtie2 parameters for best alignment
genome assembly alignment blog snp written 4.8 years ago by cvu130 • updated 11 months ago by saraholiver3070
17
votes
2
answers
14k
views
2
answers
samtools (conversion from .sam to .bam) and sorting of .bam file
genome next-gen alignment sequencing written 3.9 years ago by ravi.uhdnis150 • updated 3.9 years ago by jshall40
0
votes
1
answer
13k
views
1
answer
Bowtie2 (ERR): bowtie2-align exited with value 1
bowtie2 alignment chip-seq written 3.2 years ago by s-root0 • updated 6 months ago by RamRS21k
14
votes
2
answers
13k
views
10 follow
2
answers
8
votes
1
answer
13k
views
1
answer
HISAT2 command help
alignment rna-seq written 3.2 years ago by dina.hesham139120
20
votes
2
answers
13k
views
5 follow
2
answers
How To Run Clustalw Using Commands From An Input File
alignment sequence clustalw command-line written 8.3 years ago by NPalopoli280 • updated 8.1 years ago by Thaman3.2k
14
votes
5
answers
13k
views
7 follow
5
answers
BWA MEM Algorithm
alignment next-gen written 4.0 years ago by arunnatrajanravi30 • updated 3.2 years ago by shivani9674520
3
votes
3
answers
13k
views
3
answers
How Can I Download The Results From An Ncbi Blast Search?
ncbi alignment blast genbank written 7.5 years ago by John750 • updated 11 months ago by Biostar ♦♦ 20
11
votes
2
answers
13k
views
7 follow
2
answers
8
votes
1
answer
13k
views
5 follow
1
answer
Short And Long Read Sequencing
short next-gen alignment sequencing written 8.2 years ago by Higherdefender110 • updated 8.1 years ago by Istvan Albert ♦♦ 80k
3
votes
1
answer
12k
views
1
answer
what are single copy genes?
genome alignment blast sequencing written 4.3 years ago by chrisclarkson10070 • updated 4.3 years ago by Zev.Kronenberg11k
10
votes
6
answers
12k
views
6
answers
7
votes
2
answers
12k
views
8 follow
2
answers
can picard use multiple threads?
alignment written 4.8 years ago by naruto1nrt20 • updated 3.2 years ago by l0o0170
72
votes
5
answers
12k
views
22 follow
5
answers
Tutorial: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs alignment tutorial bwa written 6.2 years ago by lh331k • updated 6.1 years ago by pan.alexiou10
11
votes
1
answer
12k
views
5 follow
1
answer
Pairwise Sequence Alignment With R
R alignment written 7.3 years ago by Lakshmi40 • updated 7.3 years ago by David W4.7k
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