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57
votes
6
answers
42k
views
32 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 8.5 years ago by Ric160 • updated 8.5 years ago by Ketil4.0k
109
votes
8
answers
40k
views
54 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 9.2 years ago by Matthieu460 • updated 4.3 years ago by alexisdereeper30
94
votes
15
answers
33k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 9.9 years ago by User 1586280 • updated 2.1 years ago by endrebak810
42
votes
5
answers
28k
views
27 follow
5
answers
How to extract unique mapped results from Bowtie2 bam results?
alignment written 6.1 years ago by zhwjmch90 • updated 4.1 years ago by merodev140
75
votes
5
answers
27k
views
27 follow
5
answers
Star Or Tophat?
rnaseq tophat alignment written 6.5 years ago by lkmklsmn930 • updated 6.2 years ago by super60
10
votes
3
answers
25k
views
9 follow
3
answers
How To Interpret Gap Penalty For Sequence Alignment?
sequence alignment written 8.3 years ago by Shan50 • updated 8.3 years ago by Ari110
18
votes
2
answers
25k
views
2
answers
what is the difference between GRCh37 and hg19 ?
genome assembly alignment rna-seq written 5.6 years ago by jack800 • updated 6 months ago by Kevin Blighe61k
13
votes
2
answers
24k
views
6 follow
2
answers
Blast Help On Nucleotide Collection Nr/Nt
ncbi fasta alignment blast written 8.8 years ago by Matt50 • updated 8.8 years ago by Digiomics170
14
votes
2
answers
23k
views
2
answers
hg38 annotation file (gtf) UCSC format
alignment rna-seq written 4.4 years ago by dina.hesham139120 • updated 3.4 years ago by inambioinfo100
20
votes
8
answers
22k
views
6 follow
8
answers
how to unzip the files in batch?
next-gen alignment rna-seq snp written 5.2 years ago by flavobacteria50 • updated 2.2 years ago by saraholiver3070
9
votes
4
answers
22k
views
11 follow
4
answers
Estimating Insert Size From Paired End Data.
picard paired-end alignment written 6.4 years ago by geek_y11k • updated 2.7 years ago by jmodlis0
23
votes
4
answers
21k
views
5 follow
4
answers
What is SIFT-score?
next-gen alignment sequencing written 5.6 years ago by mangfu100730 • updated 4.6 years ago by r0ntu50
16
votes
1
answer
19k
views
8 follow
1
answer
25
votes
2
answers
18k
views
8 follow
2
answers
samtools (conversion from .sam to .bam) and sorting of .bam file
genome next-gen alignment sequencing written 5.1 years ago by ravi.uhdnis180 • updated 5.1 years ago by jshall40
0
votes
1
answer
18k
views
1
answer
Bowtie2 (ERR): bowtie2-align exited with value 1
bowtie2 alignment chip-seq written 4.4 years ago by s-root0 • updated 21 months ago by RamRS27k
14
votes
2
answers
17k
views
10 follow
2
answers
14
votes
3
answers
17k
views
7 follow
3
answers
BWA MEM Algorithm
alignment next-gen written 5.2 years ago by arunnatrajanravi30 • updated 4.4 years ago by shivani9674520
15
votes
3
answers
17k
views
9 follow
3
answers
Bowtie2 parameters for best alignment
genome assembly alignment blog snp written 6.1 years ago by cvu150 • updated 2.2 years ago by saraholiver3070
23
votes
5
answers
17k
views
11 follow
5
answers
Number Of Reads In A Sam File Which Are Assigned To Each Chromosome?
alignment sam written 8.6 years ago by KCC4.0k • updated 2.7 years ago by Simply Bioinformatics170
19
votes
4
answers
16k
views
10 follow
4
answers
Bowtie Alignment And Low Percentage Of Mapped Reads
genome alignment bowtie written 8.0 years ago by samsara600 • updated 5.5 years ago by Leandro de Mattos90
3
votes
1
answer
16k
views
1
answer
what are single copy genes?
genome alignment blast sequencing written 5.5 years ago by chrisclarkson10080 • updated 5.5 years ago by Zev.Kronenberg11k
21
votes
2
answers
15k
views
5 follow
2
answers
How To Run Clustalw Using Commands From An Input File
alignment sequence clustalw command-line written 9.6 years ago by NPalopoli290 • updated 9.3 years ago by Thaman3.2k
3
votes
3
answers
15k
views
3
answers
How Can I Download The Results From An Ncbi Blast Search?
ncbi alignment blast genbank written 8.7 years ago by John770 • updated 2.2 years ago by Biostar ♦♦ 20
9
votes
2
answers
15k
views
9 follow
2
answers
can picard use multiple threads?
alignment written 6.0 years ago by naruto1nrt20 • updated 4.4 years ago by l0o0200
10
votes
1
answer
15k
views
1
answer
HISAT2 command help
alignment rna-seq written 4.4 years ago by dina.hesham139120
35
votes
1
answer
15k
views
18 follow
1
answer
bash loop for alignment RNA-seq data
next-gen alignment rna-seq written 6.2 years ago by Paul1.4k • updated 2.7 years ago by parmarsachinsingh0
18
votes
2
answers
15k
views
2
answers
the difference between BED files and BedGraph files
genome next-gen alignment sequencing written 5.8 years ago by akivab2100 • updated 5.8 years ago by Ian5.6k
8
votes
1
answer
14k
views
5 follow
1
answer
Short And Long Read Sequencing
short next-gen alignment sequencing written 9.4 years ago by Higherdefender130 • updated 9.3 years ago by Istvan Albert ♦♦ 84k
12
votes
2
answers
14k
views
9 follow
2
answers
10
votes
6
answers
14k
views
6
answers
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