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109
votes
8
answers
40k
views
54 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 9.2 years ago by Matthieu460 • updated 4.3 years ago by alexisdereeper30
48
votes
3
answers
4.8k
views
34 follow
3
answers
94
votes
15
answers
33k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 9.9 years ago by User 1586280 • updated 2.1 years ago by endrebak830
72
votes
5
answers
13k
views
22 follow
5
answers
Tutorial: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs alignment tutorial bwa written 7.4 years ago by lh332k • updated 7.3 years ago by pan.alexiou10
57
votes
6
answers
42k
views
32 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 8.5 years ago by Ric160 • updated 8.5 years ago by Ketil4.0k
81
votes
2
answers
9.0k
views
17 follow
2
answers
Alignment and mapping
alignment next-gen mapping written 4.3 years ago by statfa530 • updated 4.3 years ago by Benn8.0k
75
votes
5
answers
27k
views
27 follow
5
answers
Star Or Tophat?
rnaseq tophat alignment written 6.5 years ago by lkmklsmn930 • updated 6.2 years ago by super60
27
votes
1
answer
5.1k
views
14 follow
1
answer
Grch38 And Reference Alignment
alignment human written 6.4 years ago by aniketd86150 • updated 6.4 years ago by deanna.church1.1k
38
votes
6
answers
8.8k
views
14 follow
6
answers
Multiple Sequence Alignment For Cdnas
alignment cdna clustalw multiple written 9.8 years ago by Haibao Tang3.0k • updated 4.2 years ago by kissaj100
32
votes
3
answers
9.0k
views
12 follow
3
answers
40
votes
1
answer
7.3k
views
1
answer
Burrow-Wheeler Alignment
alignment bwa bowtie written 8.9 years ago by Bioscientist1.7k • updated 3.8 years ago by Biostar ♦♦ 20
44
votes
6
answers
2.6k
views
6 follow
6
answers
18
votes
1
answer
1.1k
views
16 follow
1
answer
Forum: Review of the CIGAR string format
forum alignment written 20 months ago by Juke344.4k
17
votes
2
answers
2.5k
views
2
answers
Ultra-Conservation In Genome Comparisons
conservation similarity alignment comparative statistics written 9.9 years ago by Haibao Tang3.0k • updated 9.9 years ago by Aaron Statham1.1k
28
votes
4
answers
5.5k
views
8 follow
4
answers
68
votes
5
answers
9.5k
views
16 follow
5
answers
What Should I Use Blat For?
alignment written 7.6 years ago by KCC4.0k • updated 7.6 years ago by David Quigley11k
21
votes
3
answers
6.0k
views
6 follow
3
answers
13
votes
2
answers
8.0k
views
5 follow
2
answers
11
votes
0
answers
2.9k
views
7 follow
0
answers
Tool: sam2pairwise: a tool to visualize SAM entries as pairwise alignments
alignment sam tool written 5.9 years ago by Matt LaFave290 • updated 5.9 years ago by Devon Ryan95k
10
votes
0
answers
2.2k
views
0
answers
News: 1000 Genomes data on GRCh38
1000 genomes news alignment grch38 alts written 4.7 years ago by fairley100
39
votes
3
answers
6.8k
views
3
answers
What is the reason for trimming reads to 30 bp for ATAC-seq aligning?
alignment atac-seq written 3.7 years ago by datascientist28440 • updated 2.4 years ago by Kevin Blighe61k
32
votes
3
answers
8.4k
views
15 follow
3
answers
Which Aligners Recognize Soft-Masked Repeats In Reference Sequences?
alignment written 9.7 years ago by Jeremy Leipzig19k • updated 7.3 years ago by Ali R. Vahdati190
33
votes
4
answers
5.6k
views
5 follow
4
answers
Multiple Sequence Alignment Of Thousands Of Proteins
domain alignment evolution clustering written 9.2 years ago by Dror280 • updated 9.2 years ago by Andreas2.5k
23
votes
3
answers
11k
views
12 follow
3
answers
Long read alignment
alignment rna-seq written 5.7 years ago by bdeonovic180 • updated 5.7 years ago by lh332k
21
votes
4
answers
3.6k
views
10 follow
4
answers
25
votes
2
answers
8.8k
views
2
answers
Splice aware aligner - what does it mean?
splicing alignment rna-seq written 4.4 years ago by jonasmst310 • updated 4.4 years ago by Chris Cole750
14
votes
2
answers
6.0k
views
7 follow
2
answers
Counting Short-Read Gene Alignments With Bowtie/Tophat.
gene tophat alignment written 9.8 years ago by Chris Warth90 • updated 9.8 years ago by Ryan Dale4.9k
25
votes
4
answers
4.4k
views
5 follow
4
answers
Low Complexity Sequence Alignment
sequence alignment written 9.6 years ago by Noyk80 • updated 8.7 years ago by Anuraj Nayarisseri750
28
votes
4
answers
8.7k
views
10 follow
4
answers
Aligning Circular Sequences
alignment written 9.5 years ago by William Spooner300 • updated 21 months ago by yaximik0
22
votes
2
answers
13k
views
9 follow
2
answers
Blast Two Sequences
alignment biopython blast written 8.2 years ago by flitrfli80 • updated 2.4 years ago by santhoshhegde2780
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