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105
votes
8
answers
39k
views
50 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 8.3 years ago by Matthieu • 430 • updated 3.4 years ago by alexisdereeper • 30
94
votes
15
answers
31k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 9.0 years ago by User 1586 • 280 • updated 15 months ago by endrebak • 780
72
votes
5
answers
12k
views
22 follow
5
answers
Tutorial: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs alignment tutorial bwa written 6.5 years ago by lh3 ♦ 31k • updated 6.4 years ago by pan.alexiou • 10
37
votes
3
answers
2.4k
views
25 follow
3
answers
Tutorial: Which human reference genome should I use?
genome assembly tutorial alignment written 10 months ago by finswimmer ♦ 12k
75
votes
5
answers
25k
views
27 follow
5
answers
Star Or Tophat?
rnaseq tophat alignment written 5.6 years ago by lkmklsmn • 890 • updated 5.3 years ago by super • 60
27
votes
1
answer
4.7k
views
14 follow
1
answer
Grch38 And Reference Alignment
alignment human written 5.5 years ago by aniketd86 • 150 • updated 5.5 years ago by deanna.church • 1.1k
55
votes
6
answers
38k
views
29 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 7.6 years ago by Ric • 140 • updated 7.6 years ago by Ketil ♦ 4.0k
38
votes
6
answers
8.0k
views
14 follow
6
answers
Multiple Sequence Alignment For Cdnas
alignment cdna clustalw multiple written 8.9 years ago by Haibao Tang ♦ 3.0k • updated 3.3 years ago by kissaj • 90
64
votes
2
answers
6.7k
views
12 follow
2
answers
Alignment and mapping
alignment next-gen mapping written 3.4 years ago by statfa • 450 • updated 3.4 years ago by Benn ♦ 7.4k
32
votes
3
answers
8.5k
views
12 follow
3
answers
Any Hardware Recommendations For A Molecular Biology Lab That'S Getting Into Bioinformatics?
next-gen cloud chip-seq sequencing alignment hardware written 9.0 years ago by Colin • 120 • updated 9.0 years ago by jvijai • 1.1k
40
votes
1
answer
6.9k
views
1
answer
Burrow-Wheeler Alignment
alignment bwa bowtie written 8.0 years ago by Bioscientist • 1.7k • updated 2.9 years ago by Biostar ♦♦ 20
44
votes
6
answers
2.4k
views
6 follow
6
answers
What Would You Recommend For Great Examples Of Sequence Alignment In Biology?
sequence alignment written 8.0 years ago by The Original Gtk • 190 • updated 8.0 years ago by jli99 • 150
18
votes
1
answer
641
views
16 follow
1
answer
Forum: Review of the CIGAR string format
forum alignment written 9 months ago by Juke-34 • 2.4k
17
votes
2
answers
2.3k
views
2
answers
Ultra-Conservation In Genome Comparisons
conservation similarity alignment comparative statistics written 9.1 years ago by Haibao Tang ♦ 3.0k • updated 9.1 years ago by Aaron Statham • 1.1k
68
votes
5
answers
8.9k
views
16 follow
5
answers
What Should I Use Blat For?
alignment written 6.7 years ago by KCC • 3.9k • updated 6.7 years ago by David Quigley ♦ 11k
21
votes
3
answers
5.7k
views
6 follow
3
answers
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
news alignment rna-seq gene differential transcript written 6.7 years ago by bodhisattvax • 250
27
votes
4
answers
4.8k
views
8 follow
4
answers
When Is Dna Better Choice Than Aminoacids For Multiple Sequence Alignments And Phylogenetic Reconstruction?
alignment phylogenetics multiple written 7.8 years ago by jhc • 2.8k • updated 7.8 years ago by fransua • 390
13
votes
2
answers
7.3k
views
5 follow
2
answers
How Log-Odds Scores For Amino Acid Substitutions Matrices Should Be Calculated?
sequence alignment scoring written 7.7 years ago by Jan Kosinski • 1.6k • updated 5.4 years ago by Biostar ♦♦ 20
10
votes
0
answers
1.8k
views
0
answers
News: 1000 Genomes data on GRCh38
1000 genomes news alignment grch38 alts written 3.8 years ago by fairley • 100
32
votes
3
answers
7.6k
views
15 follow
3
answers
Which Aligners Recognize Soft-Masked Repeats In Reference Sequences?
alignment written 8.8 years ago by Jeremy Leipzig ♦ 18k • updated 6.4 years ago by Ali R. Vahdati • 190
33
votes
4
answers
5.1k
views
5 follow
4
answers
Multiple Sequence Alignment Of Thousands Of Proteins
domain alignment evolution clustering written 8.3 years ago by Dror • 280 • updated 8.3 years ago by Andreas • 2.4k
10
votes
0
answers
2.4k
views
7 follow
0
answers
Tool: sam2pairwise: a tool to visualize SAM entries as pairwise alignments
alignment sam tool written 5.0 years ago by Matt LaFave • 280 • updated 5.0 years ago by Devon Ryan ♦ 91k
22
votes
3
answers
10k
views
12 follow
3
answers
Long read alignment
alignment rna-seq written 4.8 years ago by bdeonovic • 180 • updated 4.8 years ago by lh3 ♦ 31k
21
votes
4
answers
3.3k
views
10 follow
4
answers
News: Pandora's Toolbox - a collection of bioinformatics programs
assembly news alignment rna-seq written 4.6 years ago by ugly.betty77 • 1.0k
14
votes
2
answers
5.8k
views
7 follow
2
answers
Counting Short-Read Gene Alignments With Bowtie/Tophat.
gene tophat alignment written 8.9 years ago by Chris Warth • 90 • updated 8.9 years ago by Ryan Dale ♦ 4.8k
25
votes
4
answers
4.1k
views
5 follow
4
answers
Low Complexity Sequence Alignment
sequence alignment written 8.7 years ago by Noyk • 80 • updated 7.8 years ago by Anuraj Nayarisseri • 740
27
votes
4
answers
7.9k
views
9 follow
4
answers
Aligning Circular Sequences
alignment written 8.6 years ago by William Spooner • 300 • updated 10 months ago by yaximik • 0
22
votes
2
answers
12k
views
9 follow
2
answers
Blast Two Sequences
alignment biopython blast written 7.3 years ago by flitrfli • 80 • updated 18 months ago by santhoshhegde278 • 0
39
votes
5
answers
25k
views
25 follow
5
answers
How to extract unique mapped results from Bowtie2 bam results?
alignment written 5.2 years ago by zhwjmch • 90 • updated 3.2 years ago by merodev • 140
9
votes
0
answers
11k
views
0
answers
News: Bio-Linux 8 is now available
assembly next-gen genome news alignment rna-seq written 5.1 years ago by rtliu • 2.0k • updated 4.3 years ago by liangqinsi • 20
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