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109
votes
8
answers
41k
views
54 follow
8
answers
Workflow Or Tutorial For Snp Calling?
alignment next-gen samtools snp sequencing written 9.7 years ago by Matthieu • 460 • updated 4.9 years ago by alexisdereeper • 30
50
votes
3
answers
6.2k
views
38 follow
3
answers
Tutorial: Which human reference genome should I use?
genome assembly tutorial alignment written 2.3 years ago by finswimmer ♦ 14k
94
votes
15
answers
33k
views
28 follow
15
answers
What Is The Quickest Algorithm For Range Overlap?
python database next-gen alignment sequencing written 10.4 years ago by User 1586 • 280 • updated 2.7 years ago by endrebak • 840
72
votes
5
answers
13k
views
22 follow
5
answers
Tutorial: For Short Reads, Which Aligners Find All Hits Given Certain Edit Distance Threshold?
ngs alignment tutorial bwa written 8.0 years ago by lh3 ♦ 32k • updated 7.8 years ago by pan.alexiou • 10
89
votes
2
answers
11k
views
20 follow
2
answers
Alignment and mapping
alignment next-gen mapping written 4.9 years ago by statfa • 540 • updated 4.9 years ago by Benn ♦ 8.1k
57
votes
6
answers
43k
views
32 follow
6
answers
Estimate Insert Size In Paired-End/Mate-Pair
next-gen paired alignment sequencing written 9.0 years ago by Ric • 170 • updated 9.0 years ago by Ketil ♦ 4.0k
77
votes
5
answers
28k
views
28 follow
5
answers
Star Or Tophat?
rnaseq tophat alignment written 7.0 years ago by lkmklsmn • 930 • updated 6.8 years ago by super • 60
27
votes
1
answer
5.3k
views
14 follow
1
answer
Grch38 And Reference Alignment
alignment human written 6.9 years ago by aniketd86 • 150 • updated 6.9 years ago by deanna.church • 1.1k
38
votes
6
answers
9.3k
views
14 follow
6
answers
Multiple Sequence Alignment For Cdnas
alignment cdna clustalw multiple written 10.4 years ago by Haibao Tang ♦ 3.0k • updated 4.7 years ago by kissaj • 100
32
votes
3
answers
9.3k
views
12 follow
3
answers
Any Hardware Recommendations For A Molecular Biology Lab That'S Getting Into Bioinformatics?
next-gen cloud chip-seq sequencing alignment hardware written 10.4 years ago by Colin • 120 • updated 10.4 years ago by jvijai • 1.2k
41
votes
1
answer
7.6k
views
1
answer
Burrow-Wheeler Alignment
alignment bwa bowtie written 9.5 years ago by Bioscientist • 1.7k • updated 4.3 years ago by Biostar ♦♦ 20
44
votes
6
answers
2.7k
views
6 follow
6
answers
What Would You Recommend For Great Examples Of Sequence Alignment In Biology?
sequence alignment written 9.4 years ago by The Original Gtk • 190 • updated 9.4 years ago by jli99 • 150
18
votes
1
answer
1.7k
views
16 follow
1
answer
Forum: Review of the CIGAR string format
forum alignment written 2.3 years ago by Juke34 • 5.0k
17
votes
2
answers
2.6k
views
2
answers
Ultra-Conservation In Genome Comparisons
conservation similarity alignment comparative statistics written 10.5 years ago by Haibao Tang ♦ 3.0k • updated 10.5 years ago by Aaron Statham • 1.1k
28
votes
4
answers
5.8k
views
8 follow
4
answers
When Is Dna Better Choice Than Aminoacids For Multiple Sequence Alignments And Phylogenetic Reconstruction?
alignment phylogenetics multiple written 9.3 years ago by jhc • 2.9k • updated 9.3 years ago by fransua • 390
68
votes
5
answers
10.0k
views
16 follow
5
answers
What Should I Use Blat For?
alignment written 8.2 years ago by KCC • 4.0k • updated 8.2 years ago by David Quigley ♦ 11k
21
votes
3
answers
6.1k
views
6 follow
3
answers
News: Survey: Rna-Seq Analysis For Differential Gene/Transcript Expression [Updated With Results]
news alignment rna-seq gene differential transcript written 8.2 years ago by bodhisattvax • 250
48
votes
5
answers
30k
views
32 follow
5
answers
How to extract unique mapped results from Bowtie2 bam results?
alignment written 6.7 years ago by zhwjmch • 120 • updated 4.7 years ago by merodev • 140
29
votes
2
answers
10k
views
2
answers
Splice aware aligner - what does it mean?
splicing alignment rna-seq written 5.0 years ago by jonasmst • 330 • updated 5.0 years ago by Chris Cole • 760
77
votes
3
answers
7.4k
views
31 follow
3
answers
Could you explain the difference between STAR, KALLISTO, SALMON etc. to experimental Biologist/non-bioinformatician
R next-gen alignment rna-seq assembly written 16 months ago by Wox • 420
13
votes
2
answers
8.4k
views
5 follow
2
answers
How Log-Odds Scores For Amino Acid Substitutions Matrices Should Be Calculated?
sequence alignment scoring written 9.2 years ago by Jan Kosinski • 1.6k • updated 6.8 years ago by Biostar ♦♦ 20
11
votes
0
answers
3.2k
views
7 follow
0
answers
Tool: sam2pairwise: a tool to visualize SAM entries as pairwise alignments
alignment sam tool written 6.4 years ago by Matt LaFave • 290 • updated 6.4 years ago by Devon Ryan ♦ 98k
10
votes
0
answers
2.4k
views
0
answers
News: 1000 Genomes data on GRCh38
1000 genomes news alignment grch38 alts written 5.3 years ago by fairley • 100
39
votes
3
answers
7.3k
views
3
answers
What is the reason for trimming reads to 30 bp for ATAC-seq aligning?
alignment atac-seq written 4.3 years ago by datascientist28 • 470 • updated 2.9 years ago by Kevin Blighe ♦ 69k
32
votes
3
answers
9.0k
views
15 follow
3
answers
Which Aligners Recognize Soft-Masked Repeats In Reference Sequences?
alignment written 10.3 years ago by Jeremy Leipzig ♦ 19k • updated 7.8 years ago by Ali R. Vahdati • 190
33
votes
4
answers
6.0k
views
5 follow
4
answers
Multiple Sequence Alignment Of Thousands Of Proteins
domain alignment evolution clustering written 9.8 years ago by Dror • 280 • updated 9.8 years ago by Andreas • 2.5k
23
votes
3
answers
12k
views
12 follow
3
answers
Long read alignment
alignment rna-seq written 6.3 years ago by bdeonovic • 180 • updated 6.3 years ago by lh3 ♦ 32k
21
votes
4
answers
3.7k
views
10 follow
4
answers
News: Pandora's Toolbox - a collection of bioinformatics programs
assembly news alignment rna-seq written 6.1 years ago by ugly.betty77 • 1.0k
47
votes
1
answer
2.8k
views
1
answer
Forum: Was FASTA ever popular?
fasta forum alignment history written 4.3 years ago by John ♦ 12k • updated 4.3 years ago by Charles Plessy • 2.7k
14
votes
2
answers
6.2k
views
7 follow
2
answers
Counting Short-Read Gene Alignments With Bowtie/Tophat.
gene tophat alignment written 10.3 years ago by Chris Warth • 90 • updated 10.3 years ago by Ryan Dale ♦ 4.9k
<prev • 6,250 results • page 1 of 209 • next >
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