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How to annotate structural variants in VCF with esv/nsv identifiers
sv annotation vcf esv nsv written 12 months ago by danilovkiri • 0 • updated 1 day ago by always_learning • 1.0k
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102
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gff3_sp_complement_annotations.pl parameter settings
gene annotation written 21 days ago by Ric • 290
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1
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63
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1
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Subsetting GFF3 files for gene models using Bash
genome annotation bash gff3 braker2 written 3 days ago by geneticatt • 0 • updated 3 days ago by lieven.sterck ♦ 6.9k
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51
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SnpSift Annotate replace ID column
snpsift annotation snps snpeff written 9 days ago by Jimbou • 700
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Convert BLAT to GFF file?
psl annotation gff alignment blat written 3.4 years ago by rm16 • 0 • updated 13 days ago by pengchy • 410
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6 follow
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HISAT2 Indexing using annotation for Rattus_norvegicus
hisat2 annotation alignment ensembl index written 16 months ago by neranjan • 40 • updated 15 days ago by robin.mesnage • 0
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Forum: MAGs annotation tools: prokka vs eggnog
genome annotation forum written 15 days ago by willnotburn • 40
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Tutorial: Training GeneMark-EP+ ab-initio tool
annotation abinitio genemark training tutorial written 16 days ago by Juke-34 • 3.3k
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108
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getting information from NCBI genebank files
ncbi assembly genebank annotation written 17 days ago by saadleeshehreen • 70
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300
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12 follow
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Tutorial: Create de novo repeat library
de-novo annotation repeat tutorial written 11 weeks ago by Juke-34 • 3.3k
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1
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114
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How to retrieve from a GFF3 file a AA and CDS files
gene annotation written 23 days ago by Ric • 290 • updated 23 days ago by Juke-34 • 3.3k
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272
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changing ID in an existing GFF3 file
gene annotation written 11 weeks ago by Ric • 290 • updated 23 days ago by lieven.sterck ♦ 6.9k
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Somatic Variant Annotation and Interpretation
annotation somatic written 23 days ago by mirzanahal • 0 • updated 23 days ago by Collin • 700
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Error while annotating with Chipseeker
chip-seq diffbind chipseeker annotation written 12 months ago by hamaor • 0 • updated 24 days ago by michal.okoniewski • 0
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19 follow
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Tutorial: Resources / databases for clinical interpretation of cancer variants
cancer interpretation tutorial variant annotation clinical written 4 months ago by Malachi Griffith ♦ 18k
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128
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1
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Adding consequences field (INFO) when using --allow_non_variant in VEP
vcf annotation vep written 28 days ago by magnolia • 0 • updated 27 days ago by Emily_Ensembl ♦ 20k
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115
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Job: Ensembl Genome Annotator (Regulation)
ensembl job annotation written 28 days ago by Emily_Ensembl ♦ 20k
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84
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Annotation of contigs through Genome assembly
genome assembly contigs annotation written 28 days ago by Chikitow • 0
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Can I use UCSC genome browser to annotate Epic data
annotation written 6 months ago by AHW • 40 • updated 28 days ago by Biostar ♦♦ 20
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How to obtain an annotation for the list of NCBI's Gene ID?
ncbi annotation geneid written 4 weeks ago by rimgubaev • 180
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145
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How to annotate gene list using enrichr?
gene annotation rna-seq written 10 weeks ago by nattzy94 • 10 • updated 4 weeks ago by Kevin Blighe ♦ 54k
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How to use SingleR for annotating single-cell transcriptomics dataset with our own custom made bulk RNA data?
annotation singler single cell sequencing written 5 weeks ago by A248 • 0 • updated 4 weeks ago by jared.andrews07 ♦ 4.9k
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Finding marker genes in draft genome
genome annotation markergenes draftgenome written 4.0 years ago by runnerdaniel • 0 • updated 4 weeks ago by onestop_data • 160
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Annotation LINE1 structure
annotation line1 written 5 weeks ago by fusion.slope • 210
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Is Genome heterozygosity a problem for gene annotation?
genome gene heterozygosity diploid annotation written 6 weeks ago by ricardoguerreiro2121 • 50 • updated 6 weeks ago by lieven.sterck ♦ 6.9k
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140
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How to get rsid during the variant annotation using VEP (offline mode)
ensembl vep annotation written 6 weeks ago by seta • 1.2k • updated 6 weeks ago by Emily_Ensembl ♦ 20k
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6 follow
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Tool: AGAT - Another Gff Analysis Toolkit
gtf annotation gff toolkit tool written 8 weeks ago by Juke-34 • 3.3k
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396
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Top hit from phmmer
gene annotation phmmer hmmer genome written 11 months ago by msobol • 20 • updated 6 weeks ago by tayab soomro • 0
12
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3
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9 follow
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annotation of SV (structural variants)
sv annotation written 2.1 years ago by Bogdan • 950 • updated 6 weeks ago by rishabh3196sharma • 0
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1
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131
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1
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Indexing error with local blast
annotation database blast rna-seq linux written 6 weeks ago by ando.kelli • 40 • updated 6 weeks ago by genomax ♦ 78k
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