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AnnotationHub Error in value[[3L]](cond) : failed to create index
cache annotationhub annotation written 1 day ago by Parham • 1.5k • updated 20 hours ago by Kevin Blighe ♦ 61k
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Gene annotation outputs NA values for real genes
annotation rna-seq written 5 days ago by Mozart • 190
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54
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comparing enriched GO terms between species
annotation rna-seq go written 8 days ago by martinaweil • 0
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2
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71
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VEP cache trancript versions
annotation ngs dna-seq vep sequencing written 11 days ago by Chadi Saad • 70 • updated 8 days ago by Michal @Ensembl • 20
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60
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Export online BLAST+ search to GFF/GTF to use as annotation
annotation written 9 days ago by joelepaul • 0
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75
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Fasta Taxonomy Annotation
fasta annotation taxonomy written 9 days ago by zach • 0 • updated 9 days ago by genomax ♦ 85k
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60
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Gene ontology for differential genes (easy manual)?
annotation kegg rna-seq written 10 days ago by sunnykevin97 • 50 • updated 10 days ago by jared.andrews07 ♦ 6.2k
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Merge two genome annotation files: one annotated by contig, the other annotated by scaffold.
annotation written 12 days ago by joelepaul • 0 • updated 12 days ago by lieven.sterck ♦ 8.0k
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Match predicted sequences to reference genome to generate data for annotation GTF
annotation written 12 days ago by joelepaul • 0
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84
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Tutorial: Human mitochondrial DNA annotation in SnpEff
annotation tutorial snpeff chrmt snp written 14 days ago by Arup Ghosh ♦ 2.5k
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71
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Genome vs. Transcriptome Annotation
gtf annotation rna-seq written 17 days ago by arussell3483 • 10 • updated 17 days ago by RamRS ♦ 27k
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65
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Maker gene prediction error
gene annotation maker written 17 days ago by the_cowa • 40
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63
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Extremely inexperienced biochemical scientist needing help manipulating a VCF file for Alissa pipeline development
genome vcf next-gen annotation sequencing written 18 days ago by ashley_hertzog • 0
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69
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Selection of start codons in Ensembl
gene models annotation ensembl written 19 days ago by i.sudbery ♦ 8.2k
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Standard BLAST parameters
genome annotation annotation hits blast evalue written 20 days ago by hydra_questions • 0
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Best tool to merge .vcf files from different variant callers?
vcf gatk annotation snp variants written 9 weeks ago by j.lunger18 • 10 • updated 22 days ago by Biostar ♦♦ 20
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87
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Annotate hs37d5 genome calls using VEP
annotation 1kgenomes vep hs37d5 written 24 days ago by igor • 0
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95
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Simple genome annotation using transcripts data
fasta annotation gff written 24 days ago by liorglic • 310
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77
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Blast: use best hit or top20 hits?
annotation blast blast2go go rna-seq written 24 days ago by tianshenbio • 50
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90
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How to convert mouse gene symbols to chicken gene symbols?
genome annotation gene rna-seq R written 26 days ago by david.f.stein • 10 • updated 26 days ago by genomax ♦ 85k
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86
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uORF annotation in Ensembl/GENCODE
annotation uorf gencode ensembl written 29 days ago by i.sudbery ♦ 8.2k • updated 29 days ago by JC ♦ 10k
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78
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maker tool get stucks forever
annotation maker written 29 days ago by hafiz.talhamalik • 230 • updated 29 days ago by lieven.sterck ♦ 8.0k
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how can I install blastclust
enrichment alignment blast annotation written 4 weeks ago by parra.sev • 0
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133
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How to find the annotation file for GPL16956 platform of Arraystar human lncRNA microarray V3 (Probe Name Version)?
bioinformatics probe annotation microarray lncrna written 5 weeks ago by daphneolivia39 • 0
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1
answer
68
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1
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SNP annotation using snpEFF
vcf annotation snpeff snp written 5 weeks ago by shrutidabral • 10 • updated 5 weeks ago by Pierre Lindenbaum ♦ 129k
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1
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99
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help me creating Prokka custom database
annotation database prokka virus written 5 weeks ago by tasbd4 • 0 • updated 5 weeks ago by Joe ♦ 17k
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Transcriptome annotation with WebMGS: Where to find information on frequency?
webmga rna-seq kog annotation written 12 weeks ago by TomM • 0 • updated 5 weeks ago by Biostar ♦♦ 20
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what should I do first: transciptome annotation or DE analysis?
assembly transcriptome rna-seq annotation written 6 weeks ago by vinicius • 10 • updated 6 weeks ago by kristoffer.vittingseerup • 3.3k
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136
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remove multiple gene symbols in the affymetrix platform
gene symbols annotation microarray affymetrix written 6 weeks ago by j_jamal96 • 0 • updated 6 weeks ago by Kevin Blighe ♦ 61k
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Varscan2 somatic output annotation with snpEff -cancer option
annotation snpeff varscan2 variant sequencing written 6 weeks ago by jobrien • 0
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