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How to convert phylo object to hclust object in R
ape alignment R written 3.0 years ago by ttsutsui102820 • updated 4 days ago by engelbert_buxbaum0
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Problem with rooting tree when imputing missing data
software error R impute.phylo ape phytools written 15 days ago by 17138950 • updated 15 days ago by _r_am32k
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plotting trees in R: node labels from nexus tree files
ape ggtree nexus revbayes R written 8 weeks ago by jmah10 • updated 8 weeks ago by Guangchuang Yu2.4k
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How to convert newick tree to ultrametric tree?
R newick ape written 11 weeks ago by nimishabalan13110 • updated 10 weeks ago by Biostar ♦♦ 20
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Problem getting tree bipartitions
phylogeny R phylo tree ape written 3 months ago by suzanne96yao0 • updated 3 months ago by Klaus S140
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R ape: find the branch length of a particular tip label
R phylogenetics ape written 17 months ago by alissamariewilliams20150 • updated 6 months ago by isagvm0
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Performing fast bootstrap in R using ape package
R bootstrap ape written 2.7 years ago by User000420 • updated 16 months ago by mgdias.jose10
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Using ape package in R to pull genbank sequences
ncbi R genbank ape written 2.7 years ago by krc300420 • updated 2.7 years ago by Kevin Blighe69k
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Phyloseq Weighted Unifrac Ordination Error
unifrac phyloseq pcoa ordination ape written 3.0 years ago by mzmd40 • updated 3.0 years ago by Kevin Blighe69k
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dist.alignment vs dist.dna for DNA distance calculation
R ape seqinr distance dna written 4.9 years ago by rimjhim.roy.ch70 • updated 3.1 years ago by sagitaninta20
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Trimming an alignment in R
R alignment ape written 5.4 years ago by Gon10 • updated 3.2 years ago by Biostar ♦♦ 20
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dist.dna in ape package proportion of invariant sites
R dist.dna ape written 4.0 years ago by matthews.alix0 • updated 4.0 years ago by Biostar ♦♦ 20
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Phylogenetics in R: obtaining internal branch lengths
R phylogenetics ape written 4.7 years ago by spiral01100 • updated 4.7 years ago by Klaus S140
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Polytomies and tree comparison
phylogeny polytomy tree-comparison bioperl ape written 4.8 years ago by Lee Katz3.1k • updated 4.8 years ago by jhc2.9k
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annotating Multiple Phylogenetic trees on the basis of color
phylogenetic analyses R ape written 4.8 years ago by Sourabh J0 • updated 4.8 years ago by DG7.2k
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How to get the outgroup of a rooted tree in R
R phylogenetics ape phangorn written 5.0 years ago by Gon10 • updated 5.0 years ago by guptapayal8150
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Bootstrapping => consensus tree construction based on distance matrices
R phylogenetics bootstrap ape written 6.6 years ago by kaaschr10 • updated 6.6 years ago by David W4.8k
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APE (R) package NJ tree - what's the scale?
phylogeny R neighbor-joining ape written 6.7 years ago by biogirl190 • updated 6.7 years ago by David W4.8k
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