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<prev • 27 results • page 1 of 1 • next >
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How to convert phylo object to hclust object in R
ape alignment R written 3.0 years ago by ttsutsui1028 • 20 • updated 4 days ago by engelbert_buxbaum • 0
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75
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Problem with rooting tree when imputing missing data
software error R impute.phylo ape phytools written 15 days ago by 1713895 • 0 • updated 15 days ago by _r_am ♦ 32k
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1
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197
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1
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plotting trees in R: node labels from nexus tree files
ape ggtree nexus revbayes R written 8 weeks ago by jmah • 10 • updated 8 weeks ago by Guangchuang Yu • 2.4k
2
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0
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213
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0
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How to convert newick tree to ultrametric tree?
R newick ape written 11 weeks ago by nimishabalan131 • 10 • updated 10 weeks ago by Biostar ♦♦ 20
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1
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144
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1
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Problem getting tree bipartitions
phylogeny R phylo tree ape written 3 months ago by suzanne96yao • 0 • updated 3 months ago by Klaus S • 140
1
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1
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1
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R ape: find the branch length of a particular tip label
R phylogenetics ape written 17 months ago by alissamariewilliams2015 • 0 • updated 6 months ago by isagvm • 0
3
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1
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1.3k
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1
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Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
R chronogram nprs phylogenetic dating ape written 3.6 years ago by BlastedBadger • 90 • updated 13 months ago by Biostar ♦♦ 20
2
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0
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3.2k
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0
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Performing fast bootstrap in R using ape package
R bootstrap ape written 2.7 years ago by User000 • 420 • updated 16 months ago by mgdias.jose • 10
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542
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Importing Newick phylogenetic tree with ade4::newick2phylog() fails with moderate size tree
phylogenetic R ade4 newick ape written 17 months ago by ido.idobar • 10
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1.6k
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1
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How to work with fasta files and make phylogenetics in R?
vcf R ape populational genetics phangorn written 21 months ago by rimgubaev • 190
2
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2
answers
868
views
2
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plot and show support values in consensus tree from n nj euclidean distance matrix replicates
nj phylo tree euclidean ape written 2.0 years ago by jlsovaz • 0
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0
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898
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0
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Plots two phylogenetic trees face to face
ape phytools trees written 2.2 years ago by luzglongoria • 40
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2
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4.7k
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2
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Difference between ape::root, ggtree::reroot and phytools::reroot in R
R phylogenetics phytools ggtree ape written 2.5 years ago by Michael • 20
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2
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6.1k
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2
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Collapsing poorly supported nodes into polytomies in R - using 'Phangorn' and 'ape'
polytomies R phylogenetics phangorn ape written 6.3 years ago by confusedious • 420 • updated 2.7 years ago by emre.cto • 0
2
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1
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1.9k
views
1
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Using ape package in R to pull genbank sequences
ncbi R genbank ape written 2.7 years ago by krc3004 • 20 • updated 2.7 years ago by Kevin Blighe ♦ 69k
0
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0
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1.7k
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0
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Phyloseq Weighted Unifrac Ordination Error
unifrac phyloseq pcoa ordination ape written 3.0 years ago by mzmd4 • 0 • updated 3.0 years ago by Kevin Blighe ♦ 69k
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1
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3.8k
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1
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dist.alignment vs dist.dna for DNA distance calculation
R ape seqinr distance dna written 4.9 years ago by rimjhim.roy.ch • 70 • updated 3.1 years ago by sagitaninta • 20
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1
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3.2k
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1
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Trimming an alignment in R
R alignment ape written 5.4 years ago by Gon • 10 • updated 3.2 years ago by Biostar ♦♦ 20
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0
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968
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0
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dist.dna in ape package proportion of invariant sites
R dist.dna ape written 4.0 years ago by matthews.alix • 0 • updated 4.0 years ago by Biostar ♦♦ 20
1
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1
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3.9k
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1
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Phylogenetics in R: obtaining internal branch lengths
R phylogenetics ape written 4.7 years ago by spiral01 • 100 • updated 4.7 years ago by Klaus S • 140
1
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1
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1.4k
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1
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Polytomies and tree comparison
phylogeny polytomy tree-comparison bioperl ape written 4.8 years ago by Lee Katz • 3.1k • updated 4.8 years ago by jhc • 2.9k
2
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2
answers
1.8k
views
2
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annotating Multiple Phylogenetic trees on the basis of color
phylogenetic analyses R ape written 4.8 years ago by Sourabh J • 0 • updated 4.8 years ago by DG ♦ 7.2k
3
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4
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3.1k
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4
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How to get the outgroup of a rooted tree in R
R phylogenetics ape phangorn written 5.0 years ago by Gon • 10 • updated 5.0 years ago by guptapayal815 • 0
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969
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0
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Creating a phylo object from a square matrix of evolutionary divergence times?
phylogeny ape trees written 5.0 years ago by Adamc • 640
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1.5k
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0
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what does the branch length computed with APE neighbor joining tree represent ?
ape neighbor joining tree dist.alignment written 5.8 years ago by Michel Edwar • 70
0
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1
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5.9k
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1
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Bootstrapping => consensus tree construction based on distance matrices
R phylogenetics bootstrap ape written 6.6 years ago by kaaschr • 10 • updated 6.6 years ago by David W ♦ 4.8k
0
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3.5k
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1
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APE (R) package NJ tree - what's the scale?
phylogeny R neighbor-joining ape written 6.7 years ago by biogirl • 190 • updated 6.7 years ago by David W ♦ 4.8k
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