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<prev • 18 results • page 1 of 1 • next >
10
votes
2
answers
192
views
2
answers
Difference between ape::root, ggtree::reroot and phytools::reroot in R
R phylogenetics phytools ggtree ape written 8 days ago by Michael • 10
5
votes
2
answers
3.5k
views
2
answers
Collapsing poorly supported nodes into polytomies in R - using 'Phangorn' and 'ape'
polytomies R phylogenetics phangorn ape written 3.9 years ago by confusedious • 390 • updated 12 weeks ago by emre.cto • 0
2
votes
1
answer
196
views
1
answer
Using ape package in R to pull genbank sequences
ncbi R genbank ape written 3 months ago by krc3004 • 0 • updated 3 months ago by Kevin Blighe ♦ 25k
2
votes
0
answers
223
views
0
answers
Performing fast bootstrap in R using ape package
R bootstrap ape written 3 months ago by User000 • 250
0
votes
0
answers
446
views
0
answers
Phyloseq Weighted Unifrac Ordination Error
unifrac phyloseq pcoa ordination ape written 7 months ago by mzmd4 • 0 • updated 6 months ago by Kevin Blighe ♦ 25k
0
votes
1
answer
284
views
1
answer
How to convert phylo object to hclust object in R
ape alignment R written 6 months ago by ttsutsui1028 • 10 • updated 6 months ago by felipelira3 • 0
0
votes
1
answer
1.3k
views
1
answer
dist.alignment vs dist.dna for DNA distance calculation
R ape seqinr distance dna written 2.5 years ago by rimjhim.roy.ch • 70 • updated 8 months ago by sagitaninta • 0
0
votes
2
answers
1.6k
views
2
answers
Trimming an alignment in R
R alignment ape written 2.9 years ago by Gon • 10 • updated 8 months ago by Biostar ♦♦ 20
3
votes
1
answer
580
views
1
answer
Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
R chronogram nprs phylogenetic dating ape written 14 months ago by BlastedBadger • 50
0
votes
0
answers
491
views
0
answers
dist.dna in ape package proportion of invariant sites
R dist.dna ape written 19 months ago by matthews.alix • 0 • updated 18 months ago by Biostar ♦♦ 20
1
vote
1
answer
1.2k
views
1
answer
Phylogenetics in R: obtaining internal branch lengths
R phylogenetics ape written 2.3 years ago by spiral01 • 70 • updated 2.2 years ago by Klaus S • 40
1
vote
1
answer
761
views
1
answer
Polytomies and tree comparison
phylogeny polytomy tree-comparison bioperl ape written 2.4 years ago by Lee Katz • 2.9k • updated 2.3 years ago by jhc • 2.7k
2
votes
2
answers
1.0k
views
2
answers
annotating Multiple Phylogenetic trees on the basis of color
phylogenetic analyses R ape written 2.4 years ago by Sourabh J • 0 • updated 2.4 years ago by Dan Gaston ♦ 7.0k
3
votes
4
answers
1.5k
views
4
answers
How to get the outgroup of a rooted tree in R
R phylogenetics ape phangorn written 2.6 years ago by Gon • 10 • updated 2.5 years ago by guptapayal815 • 0
0
votes
0
answers
627
views
0
answers
Creating a phylo object from a square matrix of evolutionary divergence times?
phylogeny ape trees written 2.6 years ago by Adamc • 540
0
votes
0
answers
913
views
0
answers
what does the branch length computed with APE neighbor joining tree represent ?
ape neighbor joining tree dist.alignment written 3.3 years ago by Michel Edwar • 40
0
votes
1
answer
4.1k
views
1
answer
Bootstrapping => consensus tree construction based on distance matrices
R phylogenetics bootstrap ape written 4.1 years ago by kaaschr • 0 • updated 4.1 years ago by David W ♦ 4.7k
0
votes
1
answer
2.2k
views
1
answer
APE (R) package NJ tree - what's the scale?
phylogeny R neighbor-joining ape written 4.3 years ago by biogirl • 140 • updated 4.3 years ago by David W ♦ 4.7k
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