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<prev • 13 results • page 1 of 1 • next >
3
votes
1
answer
123
views
1
answer
Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
R chronogram nprs phylogenetic dating ape written 8 days ago by BlastedBadger • 50
0
votes
0
answers
225
views
0
answers
dist.dna in ape package proportion of invariant sites
R dist.dna ape written 5 months ago by matthews.alix • 0 • updated 4 months ago by Biostar ♦♦ 20
1
vote
1
answer
481
views
1
answer
Phylogenetics in R: obtaining internal branch lengths
R phylogenetics ape written 13 months ago by spiral01 • 60 • updated 13 months ago by Klaus S • 40
1
vote
1
answer
457
views
1
answer
Polytomies and tree comparison
phylogeny polytomy tree-comparison bioperl ape written 14 months ago by Lee Katz • 2.8k • updated 14 months ago by jhc • 2.5k
2
votes
2
answers
584
views
2
answers
annotating Multiple Phylogenetic trees on the basis of color
phylogenetic analyses R ape written 15 months ago by Sourabh J • 0 • updated 15 months ago by Dan Gaston ♦ 6.8k
0
votes
0
answers
542
views
0
answers
dist.alignment vs dist.dna for DNA distance calculation
R ape seqinr distance dna written 16 months ago by rimjhim.roy.ch • 50
1
vote
4
answers
724
views
4
answers
How to get the outgroup of a rooted tree in R
R phylogenetics ape phangorn written 17 months ago by Gon • 10 • updated 17 months ago by guptapayal815 • 0
0
votes
0
answers
376
views
0
answers
Creating a phylo object from a square matrix of evolutionary divergence times?
phylogeny ape trees written 17 months ago by Adamc • 510
0
votes
2
answers
949
views
2
answers
Trimming an alignment in R
R alignment ape written 21 months ago by Gon • 10
0
votes
0
answers
620
views
0
answers
what does the branch length computed with APE neighbor joining tree represent ?
ape neighbor joining tree dist.alignment written 2.2 years ago by Michel Edwar • 40
5
votes
1
answer
2.7k
views
1
answer
Collapsing poorly supported nodes into polytomies in R - using 'Phangorn' and 'ape'
polytomies R phylogenetics phangorn ape written 2.7 years ago by confusedious • 370 • updated 2.7 years ago by Brice Sarver • 2.3k
0
votes
1
answer
3.0k
views
1
answer
Bootstrapping => consensus tree construction based on distance matrices
R phylogenetics bootstrap ape written 3.0 years ago by kaaschr • 0 • updated 3.0 years ago by David W ♦ 4.6k
0
votes
1
answer
1.7k
views
1
answer
APE (R) package NJ tree - what's the scale?
phylogeny R neighbor-joining ape written 3.1 years ago by biogirl • 140 • updated 3.1 years ago by David W ♦ 4.6k
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