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<prev • 24 results • page 1 of 1 • next >
0
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Problem getting tree bipartitions
phylogeny R phylo tree ape written 21 days ago by suzanne96yao • 0 • updated 10 days ago by Klaus S • 140
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1.3k
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1
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R ape: find the branch length of a particular tip label
R phylogenetics ape written 14 months ago by alissamariewilliams2015 • 0 • updated 3 months ago by isagvm • 0
3
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1
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1.2k
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1
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Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
R chronogram nprs phylogenetic dating ape written 3.4 years ago by BlastedBadger • 90 • updated 10 months ago by Biostar ♦♦ 20
2
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0
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2.9k
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0
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Performing fast bootstrap in R using ape package
R bootstrap ape written 2.5 years ago by User000 • 400 • updated 14 months ago by mgdias.jose • 10
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0
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438
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Importing Newick phylogenetic tree with ade4::newick2phylog() fails with moderate size tree
phylogenetic R ade4 newick ape written 15 months ago by ido.idobar • 10
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1
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1.3k
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1
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How to work with fasta files and make phylogenetics in R?
vcf R ape populational genetics phangorn written 18 months ago by rimgubaev • 190
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2
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778
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2
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plot and show support values in consensus tree from n nj euclidean distance matrix replicates
nj phylo tree euclidean ape written 21 months ago by jlsovaz • 0
0
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0
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786
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0
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Plots two phylogenetic trees face to face
ape phytools trees written 23 months ago by luzglongoria • 40
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2
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4.2k
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2
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Difference between ape::root, ggtree::reroot and phytools::reroot in R
R phylogenetics phytools ggtree ape written 2.2 years ago by Michael • 20
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2
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5.8k
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2
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Collapsing poorly supported nodes into polytomies in R - using 'Phangorn' and 'ape'
polytomies R phylogenetics phangorn ape written 6.1 years ago by confusedious • 420 • updated 2.4 years ago by emre.cto • 0
2
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1
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1.8k
views
1
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Using ape package in R to pull genbank sequences
ncbi R genbank ape written 2.5 years ago by krc3004 • 10 • updated 2.5 years ago by Kevin Blighe ♦ 66k
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0
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1.6k
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0
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Phyloseq Weighted Unifrac Ordination Error
unifrac phyloseq pcoa ordination ape written 2.8 years ago by mzmd4 • 0 • updated 2.7 years ago by Kevin Blighe ♦ 66k
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1
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1.8k
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1
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How to convert phylo object to hclust object in R
ape alignment R written 2.8 years ago by ttsutsui1028 • 20 • updated 2.8 years ago by felipelira3 • 0
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3.6k
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1
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dist.alignment vs dist.dna for DNA distance calculation
R ape seqinr distance dna written 4.7 years ago by rimjhim.roy.ch • 70 • updated 2.9 years ago by sagitaninta • 10
0
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1
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3.0k
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1
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Trimming an alignment in R
R alignment ape written 5.1 years ago by Gon • 10 • updated 2.9 years ago by Biostar ♦♦ 20
0
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0
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935
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0
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dist.dna in ape package proportion of invariant sites
R dist.dna ape written 3.8 years ago by matthews.alix • 0 • updated 3.8 years ago by Biostar ♦♦ 20
1
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1
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3.7k
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1
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Phylogenetics in R: obtaining internal branch lengths
R phylogenetics ape written 4.5 years ago by spiral01 • 100 • updated 4.4 years ago by Klaus S • 140
1
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1
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1.3k
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1
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Polytomies and tree comparison
phylogeny polytomy tree-comparison bioperl ape written 4.6 years ago by Lee Katz • 3.0k • updated 4.5 years ago by jhc • 2.9k
2
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2
answers
1.8k
views
2
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annotating Multiple Phylogenetic trees on the basis of color
phylogenetic analyses R ape written 4.6 years ago by Sourabh J • 0 • updated 4.6 years ago by DG ♦ 7.2k
3
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4
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2.9k
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4
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How to get the outgroup of a rooted tree in R
R phylogenetics ape phangorn written 4.8 years ago by Gon • 10 • updated 4.7 years ago by guptapayal815 • 0
0
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0
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936
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0
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Creating a phylo object from a square matrix of evolutionary divergence times?
phylogeny ape trees written 4.8 years ago by Adamc • 640
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1.4k
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0
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what does the branch length computed with APE neighbor joining tree represent ?
ape neighbor joining tree dist.alignment written 5.5 years ago by Michel Edwar • 70
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5.8k
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1
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Bootstrapping => consensus tree construction based on distance matrices
R phylogenetics bootstrap ape written 6.3 years ago by kaaschr • 10 • updated 6.3 years ago by David W ♦ 4.8k
0
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3.4k
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1
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APE (R) package NJ tree - what's the scale?
phylogeny R neighbor-joining ape written 6.5 years ago by biogirl • 190 • updated 6.5 years ago by David W ♦ 4.8k
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