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<prev • 22 results • page 1 of 1 • next >
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Importing Newick phylogenetic tree with ade4::newick2phylog() fails with moderate size tree
phylogenetic R ade4 newick ape written 18 days ago by ido.idobar • 10
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1
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249
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1
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How to work with fasta files and make phylogenetics in R?
vcf R ape populational genetics phangorn written 4 months ago by rimgubaev • 120
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2
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313
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plot and show support values in consensus tree from n nj euclidean distance matrix replicates
nj phylo tree euclidean ape written 7 months ago by jlsovaz • 0
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344
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Plots two phylogenetic trees face to face
ape phytools trees written 9 months ago by luzglongoria • 20
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Difference between ape::root, ggtree::reroot and phytools::reroot in R
R phylogenetics phytools ggtree ape written 12 months ago by Michael • 20
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4.5k
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Collapsing poorly supported nodes into polytomies in R - using 'Phangorn' and 'ape'
polytomies R phylogenetics phangorn ape written 4.9 years ago by confusedious • 420 • updated 15 months ago by emre.cto • 0
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Using ape package in R to pull genbank sequences
ncbi R genbank ape written 15 months ago by krc3004 • 0 • updated 15 months ago by Kevin Blighe ♦ 47k
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1.5k
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Performing fast bootstrap in R using ape package
R bootstrap ape written 15 months ago by User000 • 270
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1.1k
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Phyloseq Weighted Unifrac Ordination Error
unifrac phyloseq pcoa ordination ape written 19 months ago by mzmd4 • 0 • updated 18 months ago by Kevin Blighe ♦ 47k
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963
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How to convert phylo object to hclust object in R
ape alignment R written 19 months ago by ttsutsui1028 • 20 • updated 19 months ago by felipelira3 • 0
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1
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dist.alignment vs dist.dna for DNA distance calculation
R ape seqinr distance dna written 3.5 years ago by rimjhim.roy.ch • 70 • updated 20 months ago by sagitaninta • 0
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Trimming an alignment in R
R alignment ape written 3.9 years ago by Gon • 10 • updated 21 months ago by Biostar ♦♦ 20
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908
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Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
R chronogram nprs phylogenetic dating ape written 2.2 years ago by BlastedBadger • 70
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725
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dist.dna in ape package proportion of invariant sites
R dist.dna ape written 2.6 years ago by matthews.alix • 0 • updated 2.6 years ago by Biostar ♦♦ 20
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Phylogenetics in R: obtaining internal branch lengths
R phylogenetics ape written 3.3 years ago by spiral01 • 80 • updated 3.3 years ago by Klaus S • 100
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1
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995
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1
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Polytomies and tree comparison
phylogeny polytomy tree-comparison bioperl ape written 3.4 years ago by Lee Katz • 2.9k • updated 3.3 years ago by jhc • 2.8k
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1.3k
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annotating Multiple Phylogenetic trees on the basis of color
phylogenetic analyses R ape written 3.4 years ago by Sourabh J • 0 • updated 3.4 years ago by Dan Gaston ♦ 7.1k
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2.1k
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4
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How to get the outgroup of a rooted tree in R
R phylogenetics ape phangorn written 3.6 years ago by Gon • 10 • updated 3.6 years ago by guptapayal815 • 0
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Creating a phylo object from a square matrix of evolutionary divergence times?
phylogeny ape trees written 3.6 years ago by Adamc • 600
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what does the branch length computed with APE neighbor joining tree represent ?
ape neighbor joining tree dist.alignment written 4.3 years ago by Michel Edwar • 70
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5.0k
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Bootstrapping => consensus tree construction based on distance matrices
R phylogenetics bootstrap ape written 5.2 years ago by kaaschr • 0 • updated 5.1 years ago by David W ♦ 4.7k
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2.8k
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APE (R) package NJ tree - what's the scale?
phylogeny R neighbor-joining ape written 5.3 years ago by biogirl • 170 • updated 5.3 years ago by David W ♦ 4.7k
<prev • 22 results • page 1 of 1 • next >
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