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<prev • 23 results • page 1 of 1 • next >
2
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Performing fast bootstrap in R using ape package
R bootstrap ape written 18 months ago by User000 • 270 • updated 10 weeks ago by mgdias.jose • 10
1
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0
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207
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0
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R ape: find the branch length of a particular tip label
R phylogenetics ape written 10 weeks ago by alissamariewilliams2015 • 0
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0
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122
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Importing Newick phylogenetic tree with ade4::newick2phylog() fails with moderate size tree
phylogenetic R ade4 newick ape written 3 months ago by ido.idobar • 10
1
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1
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370
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1
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How to work with fasta files and make phylogenetics in R?
vcf R ape populational genetics phangorn written 7 months ago by rimgubaev • 140
2
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2
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387
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2
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plot and show support values in consensus tree from n nj euclidean distance matrix replicates
nj phylo tree euclidean ape written 10 months ago by jlsovaz • 0
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426
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Plots two phylogenetic trees face to face
ape phytools trees written 12 months ago by luzglongoria • 20
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2
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2.2k
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2
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Difference between ape::root, ggtree::reroot and phytools::reroot in R
R phylogenetics phytools ggtree ape written 15 months ago by Michael • 20
5
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2
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4.7k
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2
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Collapsing poorly supported nodes into polytomies in R - using 'Phangorn' and 'ape'
polytomies R phylogenetics phangorn ape written 5.1 years ago by confusedious • 420 • updated 17 months ago by emre.cto • 0
2
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1
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1.3k
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1
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Using ape package in R to pull genbank sequences
ncbi R genbank ape written 18 months ago by krc3004 • 10 • updated 18 months ago by Kevin Blighe ♦ 51k
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1.2k
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Phyloseq Weighted Unifrac Ordination Error
unifrac phyloseq pcoa ordination ape written 22 months ago by mzmd4 • 0 • updated 21 months ago by Kevin Blighe ♦ 51k
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1
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1.1k
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1
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How to convert phylo object to hclust object in R
ape alignment R written 21 months ago by ttsutsui1028 • 20 • updated 21 months ago by felipelira3 • 0
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1
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2.6k
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1
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dist.alignment vs dist.dna for DNA distance calculation
R ape seqinr distance dna written 3.7 years ago by rimjhim.roy.ch • 70 • updated 23 months ago by sagitaninta • 0
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2
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2.4k
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2
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Trimming an alignment in R
R alignment ape written 4.2 years ago by Gon • 10 • updated 24 months ago by Biostar ♦♦ 20
3
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1
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982
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1
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Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
R chronogram nprs phylogenetic dating ape written 2.4 years ago by BlastedBadger • 80
0
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0
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777
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dist.dna in ape package proportion of invariant sites
R dist.dna ape written 2.8 years ago by matthews.alix • 0 • updated 2.8 years ago by Biostar ♦♦ 20
1
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1
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2.7k
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1
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Phylogenetics in R: obtaining internal branch lengths
R phylogenetics ape written 3.5 years ago by spiral01 • 100 • updated 3.5 years ago by Klaus S • 100
1
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1
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1.1k
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1
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Polytomies and tree comparison
phylogeny polytomy tree-comparison bioperl ape written 3.6 years ago by Lee Katz • 3.0k • updated 3.6 years ago by jhc • 2.8k
2
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2
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1.4k
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2
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annotating Multiple Phylogenetic trees on the basis of color
phylogenetic analyses R ape written 3.6 years ago by Sourabh J • 0 • updated 3.6 years ago by Dan Gaston ♦ 7.1k
3
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4
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2.3k
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4
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How to get the outgroup of a rooted tree in R
R phylogenetics ape phangorn written 3.8 years ago by Gon • 10 • updated 3.8 years ago by guptapayal815 • 0
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824
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Creating a phylo object from a square matrix of evolutionary divergence times?
phylogeny ape trees written 3.8 years ago by Adamc • 620
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1.2k
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what does the branch length computed with APE neighbor joining tree represent ?
ape neighbor joining tree dist.alignment written 4.6 years ago by Michel Edwar • 70
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1
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5.1k
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1
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Bootstrapping => consensus tree construction based on distance matrices
R phylogenetics bootstrap ape written 5.4 years ago by kaaschr • 10 • updated 5.4 years ago by David W ♦ 4.7k
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1
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2.9k
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1
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APE (R) package NJ tree - what's the scale?
phylogeny R neighbor-joining ape written 5.5 years ago by biogirl • 180 • updated 5.5 years ago by David W ♦ 4.7k
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