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Using ape package in R to pull genbank sequences
ncbi R genbank ape written 15 months ago by krc30040 • updated 15 months ago by Kevin Blighe47k
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Phyloseq Weighted Unifrac Ordination Error
unifrac phyloseq pcoa ordination ape written 19 months ago by mzmd40 • updated 18 months ago by Kevin Blighe47k
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How to convert phylo object to hclust object in R
ape alignment R written 19 months ago by ttsutsui102820 • updated 19 months ago by felipelira30
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dist.alignment vs dist.dna for DNA distance calculation
R ape seqinr distance dna written 3.5 years ago by rimjhim.roy.ch70 • updated 20 months ago by sagitaninta0
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Trimming an alignment in R
R alignment ape written 3.9 years ago by Gon10 • updated 21 months ago by Biostar ♦♦ 20
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dist.dna in ape package proportion of invariant sites
R dist.dna ape written 2.6 years ago by matthews.alix0 • updated 2.6 years ago by Biostar ♦♦ 20
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Phylogenetics in R: obtaining internal branch lengths
R phylogenetics ape written 3.3 years ago by spiral0180 • updated 3.3 years ago by Klaus S100
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Polytomies and tree comparison
phylogeny polytomy tree-comparison bioperl ape written 3.4 years ago by Lee Katz2.9k • updated 3.3 years ago by jhc2.8k
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annotating Multiple Phylogenetic trees on the basis of color
phylogenetic analyses R ape written 3.4 years ago by Sourabh J0 • updated 3.4 years ago by Dan Gaston7.1k
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How to get the outgroup of a rooted tree in R
R phylogenetics ape phangorn written 3.6 years ago by Gon10 • updated 3.6 years ago by guptapayal8150
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Bootstrapping => consensus tree construction based on distance matrices
R phylogenetics bootstrap ape written 5.2 years ago by kaaschr0 • updated 5.1 years ago by David W4.7k
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APE (R) package NJ tree - what's the scale?
phylogeny R neighbor-joining ape written 5.3 years ago by biogirl170 • updated 5.3 years ago by David W4.7k
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