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Tool: Aquaria: simplifying discovery and insight from protein structures

snp tool sequence aquaria 3d structure written 4.7 years ago by Aquaria team • 90

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Recent Replies

C: How could I understand the Trim Galore --trim1 parameter ? by h.mon ♦ 27k
The title asks how to understand Trim_Galore `--trim1` parameter, but apparently the real questio...
C: Comparing two columns of one file with two columns of another file, print all th by Thanujay S • 0
Okay! According to the example ive put forward, I meant that oculocerebrorenal syndrome is a key...
C: Comparing two columns of one file with two columns of another file, print all th by Thanujay S • 0
Hey! Yeah exactly. It should act like a key and only match where both the name and the HP ID matc...
C: how to merge gvcf using bcftools by finswimmer ♦ 12k
> Failed to merge alleles. Is this the whole error message? If not, please post also the rest...
C: What to think about when treating scRNA-Seq data as bulk RNA-Seq data by shoujun.gu • 240
You can use scDE tools, such as DESingle, etc. Bulk analysis usually do not consider dropouts.
C: edgeR gives no DE genes <0.05 FDR by Charles Warden ♦ 7.3k
I think this is very important - you need to critically assess your results. Even if there is a ...
A: What to think about when treating scRNA-Seq data as bulk RNA-Seq data by danvoronov • 10
I was wondering if it was possible to use one or more of the FASTQ files (if you have 10x genomic...
A: Making nice plots based on the different metrics from VCF file by pwwang • 0
Try this out: https://github.com/pwwang/vcfstats
C: RNA sequencing how to see expression value by mxlsherry1992 • 30
Hi, sorry for the unclear statement, I don't need to compare the expression value between A, B sp...
A: RNA sequencing how to see expression value by mxlsherry1992 • 30
Hi, sorry for the unclear statement, I don't need to compare the expression value between A, B sp...
C: Aligning short oligos containing Ns to a genome by archana.bioinfo87 • 170
Hi, If your file is not too big than you can try this command. Here your query sequence will act...
C: Aligning short oligos containing Ns to a genome by ATpoint ♦ 24k
Not sure about BLAST but most NGS aligners consider ambiguous (non-ATCG) characters as mismatches...

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