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Tool: Aquaria: simplifying discovery and insight from protein structures

snp tool sequence aquaria 3d structure written 4.5 years ago by Aquaria team • 90

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Recent Replies

A: small wheat samples fastq or fatq.gz for testing pipeline by MatthewP • 180
Hello, use [seqtk](https://github.com/lh3/seqtk). Command `seqtk sample` can sample specific numb...
A: Looking For A Way To Count Total Length Of Regions Of Bed File by demolidd77 • 40
## For a BED file , you can cacalculate its total size to use `awk -F'\t' 'BEGIN{SUM=0}{ SUM+...
C: From StringTie to DESeq2 by MatthewP • 180
Hello, may I ask this means if you want both `novel` transcript analysis and `DESeq2` you have t...
C: How Can I Know The Length Of Mapped Reads From Bam File? by xiaoleiusc • 0
thanks a lot! so if I only want unmapped reads length distribution, I just need to make the "F" c...
C: Trimming adaptors with trimmomatic by Hussain Ather • 940
It may have to do with the CROP and MINLEN parameters. How long are your reads?
C: Can you detect novel (non-coding) transcripts using Salmon and the hg38 transcri by Morris_Chair • 120
Thank you Kristoffer :)
C: vcflib-popstats to calculate FIS of a subpopulation by Brice Sarver • 2.6k
Paging [Zev.Kronenberg][1]. [1]: https://www.biostars.org/u/3153/
C: Working with redundant information on BLAST output by flogin • 140
Thanks Sej, I'm gonna check this!
C: Differential Expression Analysis with batches which have different biological gr by joldare • 10
Thanks for your reply. How about batch2 and batch3?
C: Differential Expression Analysis with batches which have different biological gr by colin.kern • 290
Since batch1 is only TypeA and there's no TypeA in any other batches, then it's theoretically imp...
C: bedtools closest return no output! by colin.kern • 290
FYI bedtools can take GTF/GFF files instead of BED files, so there's not need to convert your GTF...
C: Trimming adaptors with trimmomatic by rimma.fok • 0
I took these files from SRA so I don't know if they were trimmed before. Yes, I checked it looks ...

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