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Tool: Aquaria: simplifying discovery and insight from protein structures

snp tool sequence aquaria 3d structure written 4.0 years ago by Aquaria team • 90

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Scholar to finswimmer ♦ 8.9k
Good Answer to jrj.healey ♦ 9.7k
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Recent Replies

A: How to combine a multi sample VCF from multiple sample VCF and interpret a multi by Pierre Lindenbaum ♦ 116k
> But GATK says: CombineVariants can be used for combine variant calls that were produced fro...
C: GenBank features don't extract sequences based on condition Biopython by Shred • 110
Yeah. Just to be clear, here's a screenshot from Artemis, where you can see the typical distribut...
C: GenBank features don't extract sequences based on condition Biopython by jrj.healey ♦ 9.7k
Of those 6 features, which pairs of 23S and 16S do you want to get sequence between? The closest ...
C: GenBank features don't extract sequences based on condition Biopython by Shred • 110
I'll try to be clearer using your last code. The print statement as written above gives me this r...
C: Differential expression: replicates in one condition, no replicates in the other by unawaz • 40
Coming back to this, I came across this package OUTRIDER which is able to find DEGs compared to c...
C: How can I extract the overlap of the sequence data by finswimmer ♦ 8.9k
Hello https://www.biostars.org/u/51745/ , could you please explain why do you think this is a go...
C: GenBank features don't extract sequences based on condition Biopython by jrj.healey ♦ 9.7k
Each of the features corresponding to a 16S or 23S rRNA is contained within the list `s`. Do you ...
C: Gene coverage from Bam files by David • 120
Thanks, Indeed the following command did work: > bedtools coverage -hist -b 1.mapped.bam.sor...
C: How to combine a multi sample VCF from multiple sample VCF and interpret a multi by S AR • 50
command not working!
C: GenBank features don't extract sequences based on condition Biopython by Shred • 110
Ouh, you're damn close to the solution. I've tested your code, by changing `xrange` with `range` ...
A: group samples based on shared mutations in a single multi samples vcf file by Pierre Lindenbaum ♦ 116k
using bioalcidaejdk: http://lindenb.github.io/jvarkit/BioAlcidaeJdk.html java -jar dist/bi...
A: Gene coverage from Bam files by finswimmer ♦ 8.9k
Hello, you have to use the `bed` file for the `-a` parameter and the `bam` file for the `-b` par...

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