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Tool: Aquaria: simplifying discovery and insight from protein structures

snp tool sequence aquaria 3d structure written 5.6 years ago by Aquaria team • 90

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United States, 8 minutes ago

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Teacher to Rob ♦ 4.2k
Student to sunnykevin97 • 100
Teacher to ATpoint ♦ 38k
Popular Question to MAPK • 1.6k
Supporter to hugo.avila • 110
Appreciated to jared.andrews07 ♦ 6.9k

Recent Replies

C: Hypothetical protein in Prokka by Asaf ♦ 8.4k
You can use eggnog-mapper http://eggnog-mapper.embl.de/ to assign each protein an EggNOG ortholog...
C: fastqc fails only in my directory - not my coworkers by bioinfo_cat • 0
That would make a lot of sense - I am contacting server support to ask to have a reinstallation d...
C: logCPM error in RStudio. by far.zi • 0
Those are "Mirtron" reads. I'll also check the manual again. Thank you :)
C: fastqc fails only in my directory - not my coworkers by genomax ♦ 89k
Are you running into this issue on the same server or a different server? See the solution [pos...
C: testing set for RNA-seq AML by newbio17 • 230
Your TCGA expression data was probably generated using GDC workflow for RNA-Seq. You should be ab...
C: testing set for RNA-seq AML by Kevin Blighe ♦ 65k
If the model that you have developed is 'robust' (yes, that magic word again...), then it should ...
C: Heatmap for protein abundance. by Kevin Blighe ♦ 65k
The heatmap is usually generated on the transformed expression values (usually logged values and ...
C: logCPM error in RStudio. by ATpoint ♦ 38k
That is a very low gene number, so this is no normal RNA-seq, right? Yes, raw counts, I suggest y...
A: What does it mean to calculate genomic control (lambda) at 10th percentile for G by Kevin Blighe ♦ 65k
I also provided an associated answer here: https://www.biostars.org/p/298847/ The 'percentile' p...
C: logCPM error in RStudio. by far.zi • 0
OMG, I thought I need the norm counts. The total is 478.
C: Chia-pipe cannot find the module pigz by bioinfo89 • 40
Yes I resolved it. Thanks!
C: logCPM error in RStudio. by ATpoint ♦ 38k
That is not correct. Please read the manual. You must start from raw counts. There are also very ...

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