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- A: GISTIC 2.0 markers
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- A: how to find gene ontology for genes using RNA-seq data
- C: how to find gene ontology for genes using RNA-seq data
- A: What is the simple way to remove known batch effect from RNA-seq data ?
- C: Survival analysis with gene expression
- A: One sample Wilcoxon test for each boxplot ggplot2
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Recent Replies
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C: Any up-to-date RNA-Seq Analysis Training/Courses/Papers (July 2020)? by
genomax ♦ 85k
Curiously DESeq2 is not mentioned at that link at all.
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A: Any up-to-date RNA-Seq Analysis Training/Courses/Papers (July 2020)? by
igor ♦ 11k
There is an excellent list of RNA-seq resources here: https://rnabio.org/resources/
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A: summury control quality assembly the all genome sequencing by
Istvan Albert ♦♦ 84k
MultiQC can parse the output of several different tools and collate them into one report https:/...
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C: Survival analysis with gene expression by
silsie645 • 10
I totally agree with you on the everyone has an opinion on everything part. My head has been spli...
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C: Complex Heatmap - Reordering clusters using cluster information from second matr by
RamRS ♦ 27k
Have you tried supplying a function to the `clustering_distance_row` parameter? It takes a functi...
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C: Convert Logp value to P value by
Jean-Karim Heriche ♦ 22k
You need to know which base you're using for your log.
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C: Convert Logp value to P value by
antonioggsousa • 410
Now, I think it works. I missed the sign "-".
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C: Convert Logp value to P value by
antonioggsousa • 410
Sorry, this does not work.
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C: How to generate a combined read count txt file with header as file name by
mahynsid • 0
After spending 4 hrs trying to combine the files with no luck, this finally worked. Thank you li...
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A: Convert Logp value to P value by
RamRS ♦ 27k
I'm assuming a few things here: 1. Your data was in CSV format, which you read into a data.frame...
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A: Convert Logp value to P value by
antonioggsousa • 410
Hi, To obtain the *p*-value from the **`-log10(p-value)`** you can try (assuming that you are w...
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A: how to find gene ontology for genes using RNA-seq data by
MaxF • 40
It's unclear where you are in the processing pipeline. First you need to align and get feature c...
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