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Tool: Aquaria: simplifying discovery and insight from protein structures

snp tool sequence aquaria 3d structure written 3.5 years ago by Aquaria team • 90

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Recent Replies

C: Efficiently aligning a lot of reads on the same small reference sequence by jrj.healey ♦ 5.9k
Which types of reads do you have? Fastqs? Why not just use a normal aligner like BWA or Bowtie ...
C: autosomal ancestry inference by prasundutta87 • 190
Since you are already using admixture software, check out its manual: http://www.genetics.ucla.ed...
C: which gap filler do you recommend? by Mostafa • 0
We have a draft genome which its size is about 1.52Gb. its generated from some libraries of paire...
C: which gap filler do you recommend? by WouterDeCoster ♦ 31k
Hi shahhosseini.94, It is unclear which data you have available. Please elaborate to explain you...
C: Difference in FPKM values of lncRNA when using different annotation files by grant.hovhannisyan • 990
You have (at least) two trustworthy and reliable ways to convert your bam files to read counts: ...
C: remove primer sequences from BAM file by J.F.Jiang • 710
yes, -L option can handle with non-overlapped regions.
C: remove primer sequences from BAM file by WouterDeCoster ♦ 31k
Oh, so you mean you have overlapping amplicons? Right... then my suggestion doesn't work.
C: remove primer sequences from BAM file by J.F.Jiang • 710
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C: PRSice: Imputation and clumping by Rm ♦ 7.7k
PRSice has its google group for quick answers https://groups.google.com/forum/#!forum/prsice
C: Difference in FPKM values of lncRNA when using different annotation files by piyushjo • 20
Thanks Kevin and Grant. I am using stringtie to convert bams to gtf (that contain the fpkm and t...
C: A way to verify that GFF and Fasta files make a valid pair (came from the same p by Carambakaracho • 430
One additional note: You'll make your and your colleagues life easier in the future if you includ...
C: Difference in FPKM values of lncRNA when using different annotation files by Kevin Blighe ♦ 25k
To add to what Grant has said, which is perfectly valid, I have to state that FPKM should not be ...

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