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Recent Votes
- C: Find read distribution over every gene in RNA-seq
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- A: retrieve matched genome/annotation pairs using Ensembl API
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Recent Replies
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C: Adapters fro nano pore sequence by
krushnach80 • 840
not sure i have to ask my collaborator what exactly happened
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C: How to obtain organelle genome by
lieven.sterck ♦ 8.7k
if full genome is not working out for you (though a correct approach) , you could select a subset...
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C: Use PCoA plot rather than phylogenetic tree? by
prfsullivan • 0
Yeah, I'm a little concerned that I can't do that. One suggestion I heard to was to bin the sequ...
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C: Issue installing rmats using conda by
noahhelton98 • 0
I've tried both ways and get the same results.
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C: Find read distribution over every gene in RNA-seq by
Istvan Albert ♦♦ 85k
ah indeed `genomecov` does not do that, I meant to write `bedtools coverage` instead, for that yo...
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C: How to fix this strand flips for Michigan Imputation Server? by
ryshi.study • 0
Hi Guo, I also want to try this command. May I ask where do you find the reference VCF file?
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C: Find read distribution over every gene in RNA-seq by
Shred • 220
Ok but take for example genomecov. It gives you the output of the **whole** genome, or by each po...
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A: Find read distribution over every gene in RNA-seq by
Istvan Albert ♦♦ 85k
There are many tools that compute coverages over features, say `bedtools genomcov`, `featurecount...
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C: bedtools questions ! can't sort/index by samtools after bedToBam command by
Istvan Albert ♦♦ 85k
the command you posted does not look right, that slash in front of sample.bed indicates a file in...
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C: Quantification of acetylation enriched regions at transcription factor binding s by
massimofaggiani • 0
Thank you for your answer, but I managed to do that simply by adding `-c` (count) option in `bedt...
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C: Information loss in .bgen to .bed conversion by
MS • 20
Did you manage to sort this? See whether --hard-call-threshold helps?
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C: Use PCoA plot rather than phylogenetic tree? by
antonioggsousa • 1.5k
I don't think that you can do that, but I may have be wrong. So, a PCA or PCoA is a multivariat...
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