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Tool: Aquaria: simplifying discovery and insight from protein structures

snp tool sequence aquaria 3d structure written 5.3 years ago by Aquaria team • 90

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Centurion to flogin • 210
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Recent Replies

C: Too many unmapped reads - STAR alignment by ugurcabuk • 20
Did you use BUSCOs for transcriptome assessment ? You can see whether the trinity fasta file is a...
C: Can someone provide an example of the typical output of Illumina's Global Divers by camrae324 • 0
Thank you! This is what I was looking for.
C: biopython entrez lost connection? by genomax ♦ 84k
> I remove the redundancy of protein IDs, rest only 1644 IDs, in this > way I reduce a lot ...
C: metagenomic bacterial identify by ugurcabuk • 20
check mothur and/or qiime tutorials.
C: Biopython for Beginner by flogin • 210
by the logics, if faisala85 can pass the path and the file name, the file exists...
C: Can someone provide an example of the typical output of Illumina's Global Divers by curious • 280
Based on the the writing of the question, I would guess that this is what OP is looking for, but ...
C: Biopython for Beginner by RamRS ♦ 27k
> If in doubt, use the full path to the file, not just the file, use full path to everything :-)
C: Biopython for Beginner by RamRS ♦ 27k
How does this address the file not found error? If the file does not exist, this method will prod...
A: Biopython for Beginner by flogin • 210
I suggest to you the use of argparse to avoid manual insertion of input files (https://docs.pytho...
C: biopython entrez lost connection? by flogin • 210
Thanks for your suggestions genomax, in fact, make the search locally can be a good choice, I'm g...
C: Running STAR with --twopassMode Basic by Anand Rao • 290
In the STAR help menu, default values are -alignSJDBoverhangMin 3 --alignSJoverhangMin 5 D...
C: Storing a matrix.mtx in a gene expression matrix csv/ txt format by prgrmmr70 • 0
The reason I need a dense matrix is that I need to have genes in the rows and cells in the column...

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