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Tool: Aquaria: simplifying discovery and insight from protein structures

snp tool sequence aquaria 3d structure written 3.5 years ago by Aquaria team • 90

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Recent Replies

C: PLINK heterozygosity - Negative F statistic? by moldach • 70
I believe this adds to the top-level question by seeking greater clarity on what @Caragh asked: "...
C: Insert size smaller than the read lenght by h.mon ♦ 18k
>Plus should I trim the adaptors and then merge the reads Yes, because if you don't trim the...
C: Subset analyze of multiple sample file in PLINK 1.9 by mike229lin • 10
Besides that How about using > --within [filename] ? I want to know how to use clusters o...
C: Did anyone manage to successfully run HLAScan and get results? by Kevin Blighe ♦ 26k
Do not worry, my friend. Perhaps you can contact the developers of the program: https://omictools...
C: Did anyone manage to successfully run HLAScan and get results? by Shiqi Li • 0
It means that I can't get corresponding result.May be I made a mistake expression.I'm so sorry
C: Subset analyze of multiple sample file in PLINK 1.9 by mike229lin • 10
Thanks for your help So, the command > `plink --file data --keep mylist_location1.txt` mea...
C: bcftools roh: short way to put several samples from a merged VCF in the same col by Kevin Blighe ♦ 26k
miqrom, you have never definitively explained what you want. Some test input and expected output ...
C: PCA plot for TOP 500 genes + prcomp by Kevin Blighe ♦ 26k
As per Ram, you can easily do it with the rotation matrix from prcomp. For example: pca <...
C: Choosing a ChIP-seq control for Encode pipeline? by gewa • 0
Thanks for your response! I have actually already obtained the actual target run, from outside e...
A: Choosing a ChIP-seq control for Encode pipeline? by Alex Reynolds ♦ 25k
When you browse the [matrix view][1], you should have the option to select the output format (FAS...
C: Design in DESeq: Can you combine explicit and implicit batch effect correction i by Kristin Muench • 290
Thank you very much!!
C: Deseq2: What is the most correct experimental design for this experiment? by salamandra • 160
I'm having problems in understanding confounding variables, because imagine this situation: ...

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