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Recent Replies
Comment: BLAST: overflow error
by
Makaylee
•
0
Did you ever find a solution? I'm getting the same error code and am not sure what's wrong. Running blast+ 2.11.0 as well with a built-in d…
Answer: sequencing data from different samples in the Integrative Genome Viewer (IGV)
by
dunia.aburizeg
▴
40
Check out their documentation on the official IGV website. There is also a YouTube channel for IGV that can be a good start.
Comment: Error in blast+
by
Shahin
•
0
Spaces are not much better in Linux either. Better never use spaces in naming files, and directories, and column names in SQL Database stru…
Comment: Which language use as a beginner in Bioinformatics and Computational genomics
by
rpolicastro
12k
awk is turing complete /s
Comment: sequencing data from different samples in the Integrative Genome Viewer (IGV)
by
rpolicastro
12k
Generally we don't provide answers for assignments here. As a *very* generic hint you can download the human reference and variants from pl…
Comment: Understanding gene level copy number data from TCGAbiolinks
by
bioinfo355
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0
Were you able to get answer for your questions?
Answer: Error in blast+
by
Mensur Dlakic
★
25k
Joys of doing Bioinformatics on Windows, and consequently dealing with spaces in file and directory names.
I suggest you move your datab…
Comment: Which language use as a beginner in Bioinformatics and Computational genomics
by
Mensur Dlakic
★
25k
I assume here you mean the usefulness for common tasks such as file manipulation and pipeline creations. How would one do sequence assembly…
Answer: Which language use as a beginner in Bioinformatics and Computational genomics
by
Mensur Dlakic
★
25k
There is no single language that is best suited for all areas of Bioinformatics. If one's main interest is RNA-seq, R will probably be more…
Comment: Which language use as a beginner in Bioinformatics and Computational genomics
by
Brian Bushnell
19k
It depends on specifically what you will be doing. But IMO the order of importance is Bash > Python > R.
Comment: Bam files generated with STAR cause a segmentation fault core dump error when us
by
bkffadia
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0
![Galaxy Command Line][1]
[1]: /media/images/8c45586a-e3e3-46dd-b06b-a9788a6e
Comment: RNA seq
by
Istvan Albert
99k
there is no need to "average" anything, the point of replicates and RNA-Seq in general, is to measure the same thing several times and use …
Answer: Which language use as a beginner in Bioinformatics and Computational genomics
by
Istvan Albert
99k
I would say every scientist needs to know R - so if you don't know R it would serve you well to learn it.
In my opinion Python is not we…
Answer: using RMA normalized microarray in Limma
by
ATpoint
78k
Arrays do not have counts. RMA-proceased data are fine. See limma user guide.
Comment: RNA seq
by
ATpoint
78k
What is the question? I assume you googled 'differential RNA-seq' and tried the obvious tools such as DESeq2 and limma?
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