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Recent Replies
Comment: Exonerate - using it in another project
by
helloword
•
0
Yes, it makes sense. I thought it might be such a way that can be achieved by a function call. Thanks for commenting.
Comment: Removing specified range of bases from middle of the contigs and creating new se
by
Inquisitive8995
▴
210
Thank you for your answer. I will try it out and will also change the output sequence's length on the post. I had only given that as an exa…
Comment: No INFO/info value in headers
by
ErickW
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0
Sure! From what I've observed/seen in documentation, the INFO column carries numerous values/fields. For example, [internationalgenome.org]…
Answer: Annotation Affymetrix probesets to Gene symbols
by
javanokendo
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0
I also have this data: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE133824 and I would like to convert all Affymetrix HTA 2.0 IDs …
Comment: [SOLVED] How to build a table with gene expression per cell type with Seurat ?
by
oomoru
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Thank you very much Evan!
Answer: WGCNA adjust p value
by
adam.faranda
▴
90
I don't think so, How many traits are you planning to test?
If your alpha is 0.05, the family wise error rate for 10 traits
`1 - (1 …
Comment: Exonerate - using it in another project
by
Dunois
★
1.3k
Are you talking about `Exonerate` the sequence alignment tool? Why not just write a wrapper function that just calls the tool through an ap…
Comment: How are transcriptome annotations published?
by
Dunois
★
1.3k
That's for the free version though; the paid version isn't too expensive. But your point stands.
`Zenodo` seems like the better option he…
Comment: Will this de novo transcriptome assembly be useful in looking at RNAseq differen
by
Dunois
★
1.3k
In addition to what @ponganta has said:
- What kind of a plant is this?
- Is this paired end data?
- What was the assembler you used?
…
Comment: Removing specified range of bases from middle of the contigs and creating new se
by
cpad0112
16k
That doesn't make sense to me. However it is your data. If you can convert that to tsv, try following solution:
$ parallel --col-sep "…
Comment: Removing specified range of bases from middle of the contigs and creating new se
by
Inquisitive8995
▴
210
Yes, that's right.
Comment: Removing specified range of bases from middle of the contigs and creating new se
by
cpad0112
16k
Format of coordinates to be excluded is in fasta format. Is that correct?
Comment: Removing specified range of bases from middle of the contigs and creating new se
by
Inquisitive8995
▴
210
Hi, I have modified the post. Hope it makes sense now. Thanks.
Comment: Removing specified range of bases from middle of the contigs and creating new se
by
cpad0112
16k
post is confusing to me without input sequences, format, input files and expected output. Could you please elaborate with example input and…
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