arrow Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: arrow • reset

or Classic search

votes

answers

5.3k

views

29 follow

answers

Tutorial: Polish PacBio assembly with latest PacBio tools : an affordable solution for everyone

pbalign tutorial polishing pacbio arrow smrt limk written 15 months ago by Roxane Boyer • 820 • updated 15 days ago by cecilio11 • 20

votes

answers

104

views

answers

inputs to genomicconsensus arrow algorithm

assembly polish arrow pacbio written 7 weeks ago by peri.tobias • 10

vote

answer

291

views

answer

Extracting reads from Pacbio Sequel BAM by read name

sequel arrow pbalign pacbio bam written 4 months ago by roryC • 0

votes

answers

701

views

answers

Arrow Assembly polishing Error "KeyError: 'BASECALLERVERSION'"

arrow pacbio basecallerversion assembly written 9 months ago by David_emir • 300 • updated 5 months ago by whm568019240 • 0

votes

answers

282

views

answers

Subset BAM file based on selected coverage, PacBio reads

arrow pbalign coverage bam pacbio written 6 months ago by MyrNat • 0

votes

answers

537

views

answers

Minimum coverage for PacBio Arrow

assembly polishing pacbio arrow written 8 months ago by jean.elbers • 470

votes

answer

1.1k

views

answer

Problem installing quiver

quiver polishing pacbio arrow written 17 months ago by cristian • 180 • updated 14 months ago by johnj • 0

Recent Votes

Recent Locations • All »

Brazil, just now
United States, 1 minute ago
United States, 4 minutes ago
United Kingdom, 4 minutes ago

Recent Awards • All »

Teacher to vkkodali • 660
Scholar to vkkodali • 660
Teacher to vkkodali • 660
Scholar to vkkodali • 660
Librarian to Kevin Blighe ♦ 33k
Appreciated to Pierre Lindenbaum ♦ 115k

Recent Replies

A: how many files are generated after sorting of .bam file ? by h.mon ♦ 21k
SAMtools by default uses 768Mb memory per thread, so when sorting larger bams it will have to wri...
C: Split fatsq according to barcodes by h.mon ♦ 21k
Please, instead of posting images, copy / paste the fastq and index snippets, and format them wi...
A: several effect for one SNP annotated by SNPeff by Kevin Blighe ♦ 33k
See these: These are the transcript splice isoforms of *BRCA1*, taken from UCSC Genome Browser...
C: Split fatsq according to barcodes by Pierre Lindenbaum ♦ 115k
> I also wrote a python script, but it runs so slow show us the code
C: how many files are generated after sorting of .bam file ? by toralmanvar • 720
Check [this][1] [1]: https://www.biostars.org/p/289378/
C: ERROR MESSAGE: QD annotation at VariantRecalibrator by toralmanvar • 720
Have you validated the input VCFs with ValidateVariants?
C: how many files are generated after sorting of .bam file ? by iqra • 0
samtools 1.7 Using htslib 1.7-2 Copyright (C) 2018 Genome Research Ltd.
C: how many files are generated after sorting of .bam file ? by WouterDeCoster ♦ 35k
Are you using the latest version of samtools?
A: how many files are generated after sorting of .bam file ? by iqra • 0
indexing of .bam file is giving this error . how it would be handle ? samtools index my_sorted.ba...
A: Which tool can remove SignalP predicted signal peptides from FASTA file? by arman.vinck • 0
Alright! I have to process this information in order for me to fully understand what you've done ...
C: The evidence of the gene annotation by toralmanvar • 720
According to me, both can work as evidence. But in the case of blastx result, those are only anno...
C: how many files are generated after sorting of .bam file ? by cpad0112 • 10k
either you can furnish a temporary directory for storing temporary files or wait till the process...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 705 users visited in the last hour