arrow Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: arrow • reset

or Classic search

vote

answer

140

views

answer

Extracting reads from Pacbio Sequel BAM by read name

sequel arrow pbalign pacbio bam written 5 days ago by roryC • 0

votes

answers

3.7k

views

24 follow

answers

Tutorial: Polish PacBio assembly with latest PacBio tools : an affordable solution for everyone

pbalign tutorial polishing pacbio arrow smrt limk written 11 months ago by Roxane Boyer • 690 • updated 4 weeks ago by Vijay Lakhujani ♦ 3.0k

votes

answers

402

views

answers

Arrow Assembly polishing Error "KeyError: 'BASECALLERVERSION'"

arrow pacbio basecallerversion assembly written 5 months ago by David_emir • 290 • updated 6 weeks ago by whm568019240 • 0

votes

answers

181

views

answers

Subset BAM file based on selected coverage, PacBio reads

arrow pbalign coverage bam pacbio written 12 weeks ago by MyrNat • 0

votes

answers

270

views

answers

Minimum coverage for PacBio Arrow

assembly polishing pacbio arrow written 4 months ago by jean.elbers • 340

votes

answer

826

views

answer

Problem installing quiver

quiver polishing pacbio arrow written 14 months ago by cristian • 110 • updated 10 months ago by johnj • 0

Recent Votes

Recent Locations • All »

United Kingdom, just now
United States, just now
Netherlands, just now
UK, 1 minute ago
United States, 1 minute ago

Recent Awards • All »

Teacher to Devon Ryan ♦ 82k
Popular Question to Lila M • 380
Teacher to h.mon ♦ 18k
Scholar to h.mon ♦ 18k
Teacher to jrj.healey ♦ 6.0k
Scholar to Michael Dondrup ♦ 44k

Recent Replies

C: How to convert fasta file format to phylip file format by jrj.healey ♦ 6.0k
That confirms my suspicions about the spacing of the first and second lines in your pasted exampl...
C: covert SAM to full length fasta by marongiu.luigi • 250
I see, now the command is: $ bcftools mpileup -Ou -f | bcftools call -mv -Oz -o calls.bcf....
A: Kissplice: Problem getting SNPs in test data by leandro.ishi.lima • 80
Dear Bilal Sarwar, If KisSplice is taking too much time to run, you could try running the experi...
C: Efficiently aligning a lot of reads on the same small reference sequence by h.mon ♦ 18k
>I’d wager BWA and Bowtie would give adequate results with default parameters. Indeed. I was ...
C: covert SAM to full length fasta by Ram ♦ 17k
You forgot the `-f` flag (which the error message says quite clearly). It's in your top line but ...
C: Easier Method to Make a Bioinformatics Pipeline Available on the Web by Devon Ryan ♦ 82k
It'd be tough to spam a Galaxy server, anonymous logins won't see content from each other, so it'...
C: Solve SAM issues flagged by Picard's ValidateSamFile by genomax ♦ 54k
I was referring to checking that order of reads in `N-1_1.fq.gz` is the same as in `N-1_2.fq.gz`....
A: Is there consensus on what constitutes a good BUSCO score? by lieven.sterck • 2.1k
Not sure if there exist any consensus here , the BUSCO score is what it is. Especially since ther...
C: How to convert fasta file format to phylip file format by Mike • 1.0k
It is not copied and pasted file , I downloaded from from EMBOSS seqret result page as per below...
C: Solve SAM issues flagged by Picard's ValidateSamFile by marongiu.luigi • 250
Now that you mention it, they don't look quite the same to me. Here are some of the lines I got f...
C: Boxplot each row in a dataset in R? by marongiu.luigi • 250
In that case bwplot( sample ~ response, X ) will do that: ![enter image...
C: Suggestions for better and accurate tool for PanGenome analysis. by jrj.healey ♦ 6.0k
OrthoMCL/PorthoMCL/JustOrthologs. (Fair warning, OrthoMCL is an absolute pain in the ass to use)...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 1861 users visited in the last hour