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Why is the pacbio bam 10X the original bam file size?

arrow pbbamify genomicconsensus pacbio written 6 weeks ago by peri.tobias • 10

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6.1k

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29 follow

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Tutorial: Polish PacBio assembly with latest PacBio tools : an affordable solution for everyone

pbalign tutorial polishing pacbio arrow smrt limk written 17 months ago by Roxane Boyer • 880 • updated 11 weeks ago by cecilio11 • 30

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175

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inputs to genomicconsensus arrow algorithm

assembly polish arrow pacbio written 3 months ago by peri.tobias • 10

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362

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Extracting reads from Pacbio Sequel BAM by read name

sequel arrow pbalign pacbio bam written 6 months ago by roryC • 0

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840

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5 follow

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Arrow Assembly polishing Error "KeyError: 'BASECALLERVERSION'"

arrow pacbio basecallerversion assembly written 11 months ago by David_emir • 310 • updated 7 months ago by whm568019240 • 0

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340

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Subset BAM file based on selected coverage, PacBio reads

arrow pbalign coverage bam pacbio written 8 months ago by MyrNat • 0

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635

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Minimum coverage for PacBio Arrow

assembly polishing pacbio arrow written 10 months ago by jean.elbers • 530

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1.2k

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Problem installing quiver

quiver polishing pacbio arrow written 20 months ago by cristian • 180 • updated 16 months ago by johnj • 0

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Recent Replies

C: Removing duplicated mutations from a txt by zx8754 ♦ 6.5k
There error message from dndscv is not about `unique` issue. Do not remove duplicates, dndscv kee...
C: GO annotation file for hsa genes by arup • 850
If a solution involving R will be helpful you can try "[EnrichmentBrowser][1]" package. Tutorial...
A: Difficulty in Host removal by Bowtie2,samtools and bedtools by WouterDeCoster ♦ 36k
> 1. Can anyone suggest a way to check where I am doing wrong.Can we > convert SAM fil...
C: Automating Trimmomatic for total Noobs by WouterDeCoster ♦ 36k
Feel free to come back with your questions - we're happy to help you and point you in the directi...
C: Difficulty in Host removal by Bowtie2,samtools and bedtools by arup • 850
Can you share the commands you are using?
C: plink --assoc command gives "NA" for all the analysis (F_A,F_U,A2,CHISQ,P,OR val by kushagraprasad24 • 0
Command i ran :- plink --file input --assoc --out result
C: plink --assoc command gives "NA" for all the analysis (F_A,F_U,A2,CHISQ,P,OR val by kushagraprasad24 • 0
This is the .map data:- 1 BS00033749_51 -9 13 1 BS00100774_51 -9 13 1 BobWhite_c1...
C: plink --assoc command gives "NA" for all the analysis (F_A,F_U,A2,CHISQ,P,OR val by kushagraprasad24 • 0
This is the .ped data:- -9 450975 -9 -9 -9 2 A A C C G G C C A A G G T T A A C C C C A A ...
A: How to distinguish if a gene is a paralogue or an isoform? by kashifalikhan007 • 50
According to the basic definition isoforms are coming from same gene, so their location should be...
C: What tool can be used to predct regulatory element within an input sequence ? by lin.pei26 • 60
Thank you jrj.healey ! I will have a check!
C: How to create multiple density plots in one by a.b.federico • 0
Terrific answer. The reshape2 package is the key. Thank you!
C: Minimap2 generated a very large paf, and miniasm failed to get gfa, how to do wi by lovenlong • 10
It works, thank you.

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