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SPAdes assembly and scaffold generation
assembly next-gen written 3.6 years ago by nkvnambiar • 0 • updated 7 hours ago by cruiz_perez • 0
4
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2
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109
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2
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Meaningful DE using rpkm values in a RNA-Seq analysis
R sequencing chip-seq rna-seq assembly written 1 day ago by Seq225 • 90 • updated 18 hours ago by c.chakraborty • 140
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45
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Assembling multipartite (e.g. tripartite - 3 segments) viruses
assembly virus written 23 hours ago by bioinfo • 740
1
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0
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117
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0
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Find 3'UTRs for species
assembly forum alignment written 1 day ago by Palgrave • 20
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0
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101
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0
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clustering sequence FASTA GSS, EST, Transcripts
genome assembly next-gen sequence alignment written 26 days ago by Annie • 0 • updated 1 day ago by Biostar ♦♦ 20
2
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1
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73
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1
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In silico protein modeling
genome assembly gene written 2 days ago by ravihansa82 • 60 • updated 2 days ago by Mensur Dlakic • 540
1
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1
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67
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1
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How to find LB from fastq to create a read group?
assembly sequencing written 2 days ago by manubiomed20 • 0 • updated 2 days ago by swbarnes2 ♦ 6.2k
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2
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118
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2
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Forum: How can I practice genome assembly ? Which softwares I use?
genome assembly beginner forum software written 2 days ago by pehenriquejp • 0
2
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0
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180
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0
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Understanding coverage in genome assemblies
assembly coverage blobtools written 4 days ago by yp19 • 30 • updated 2 days ago by h.mon ♦ 27k
4
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1
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117
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1
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High CDS Count in my assembled Genome using Nanopore reads (ONT) data
wgs high cds nanopore assembly written 4 days ago by Optimist • 70 • updated 4 days ago by h.mon ♦ 27k
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98
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0
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Assembling of 22 reads from D-LOOP failed
assembly written 4 days ago by netsam • 10
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1
answer
93
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1
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Hisat2 splice sites extract blank files
assembly alignment written 5 days ago by lucas.caue.jacintho • 0 • updated 5 days ago by h.mon ♦ 27k
2
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1
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73
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1
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Paired-end reads that span a position in an assembly
bedtools genome paired-end assembly written 7 days ago by saladi1 • 30 • updated 7 days ago by Pierre Lindenbaum ♦ 122k
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3
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3.1k
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7 follow
3
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Extending ends of sequences with the help of reads?
assembly written 4.2 years ago by manekineko • 130 • updated 7 days ago by Biostar ♦♦ 20
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0
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69
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Polish PacBio assembly with Hi-C reads
assembly sequencing written 7 days ago by alex.zaccaron • 30
2
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1
answer
96
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1
answer
Extract flanking region of -500 nt upstream and downstream of BLAST result on genome using perl scripts
genome alignment sequence assembly written 7 days ago by adhirajnath14 • 0 • updated 7 days ago by jean.elbers • 1.2k
6
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5
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182
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8 follow
5
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Genome assembly statistical tools
assembly tools statistics written 13 days ago by margab • 10 • updated 8 days ago by colindaven • 1.6k
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94
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0
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10000-foot view of eCLIP data
assembly written 8 days ago by 15221101 • 0
0
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1
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84
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1
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Predicted Proteins: Mapping Reads to ORFs
assembly mapping prodigal coverage counts written 11 days ago by infenit101 • 20 • updated 8 days ago by colindaven • 1.6k
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0
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137
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0
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How to download fastq from a browser 1000 genomes human chromosome?
assembly sequence written 22 days ago by manubiomed20 • 0 • updated 8 days ago by Biostar ♦♦ 20
2
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0
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125
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0
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Converting BAM files to index files (bam.bai files)
assembly alignment rna-seq snp written 9 days ago by babasaraki • 0
2
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1
answer
181
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5 follow
1
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I can't see my bam file on igv
genome assembly alignment written 13 days ago by manubiomed20 • 0
3
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0
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99
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0
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E coli Illumina paired assembly using a reference genome?
genome assembly reference sequencing written 9 days ago by lg248 • 0
1
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1
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1.2k
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1
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SMRT analysis- what is difference between RS_HGAP_Assembly.2 vs RS_HGAP_Assembly.3
assembly pacbio written 3.7 years ago by mschmid • 90 • updated 10 days ago by Biostar ♦♦ 20
3
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1
answer
100
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1
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Does it make any sense to make a kmer analysis in assembled sequences?
genome assembly sequence written 12 days ago by al.bodrug • 50 • updated 12 days ago by Corentin • 380
1
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1
answer
140
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1
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De novo hybrid genome assembly of novel bacteria
hybrid illumina nanopore assembly written 13 days ago by tmurphy201596 • 0 • updated 13 days ago by Mensur Dlakic • 540
0
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1
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97
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1
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Low value of mapped reads against a metagenomic co-assembly
assembly next-gen alignment written 13 days ago by rafael_230987 • 0 • updated 13 days ago by biobiu • 100
1
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1
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1.7k
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1
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Is there any tool to convert blastx format from tabular to xml for feeding it to blast2go?
assembly alignment blast rna-seq sequencing written 4.1 years ago by seta • 1.2k • updated 13 days ago by Shahzad • 10
2
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1
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104
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1
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Pacbio plasmid contigs does not match with plasmid size through PFGE
assembly written 13 days ago by asim • 0 • updated 13 days ago by Mensur Dlakic • 540
0
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1
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77
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1
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Decrease stringency of bowtie2
assembly next-gen sequence alignment written 13 days ago by Wilber0x • 10 • updated 13 days ago by h.mon ♦ 27k
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