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2
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SSPACE assembling Genome!
assembly myposts written 21 months ago by fufuyou • 90 • updated 2 days ago by Biostar ♦♦ 20
0
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0
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170
views
0
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The novoBreak does not work well. Error : region "chr1:66670169-66671169" specifies an unknown reference name.
software error assembly genome written 2 days ago by seocd74 • 0
1
vote
1
answer
148
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1
answer
tool_dependencies.xml Not Working - Why?
galaxy assembly dependency tool xml written 7 weeks ago by mltaylor211 • 0 • updated 5 days ago by martenson • 380
0
votes
0
answers
91
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0
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Shot Gun metagenome sequence analysis
genome assembly next-gen sequencing written 6 days ago by venkateshbiotech • 0 • updated 6 days ago by genomax ♦ 32k
0
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1
answer
136
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1
answer
Discovar De Novo assembly - "Attempt to allocate memory failed"
software error assembly next-gen genome written 8 days ago by maxwhjohn1988 • 0
1
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0
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195
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0
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SPAdes is running out of memory
hybrid spades memory assembly fungi written 9 days ago by Lina F • 100 • updated 9 days ago by h.mon ♦ 8.0k
0
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0
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109
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0
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How to re-run ALLPATH-LG without OVERWRITE=True
assembly written 10 days ago by huangziyan11111 • 0
3
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2
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260
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8 follow
2
answers
Assembling PacBio reads using a reference genome
assembly resequencing reference pacbio written 5 weeks ago by celeste • 20 • updated 10 days ago by tjduncan • 0
3
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2
answers
242
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2
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interpretation Abyss stats
assembly next-gen abyss written 18 days ago by milanlove • 0 • updated 11 days ago by benv • 550
0
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1
answer
215
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1
answer
Reference based assembly with multiple references
assembly ngs written 22 days ago by deepti1rao • 0 • updated 11 days ago by Jean-Karim Heriche ♦ 12k
1
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0
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197
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0
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Is getting the full query read as output from Blast possible?
assembly blast query written 12 days ago by Bumble • 0
0
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1
answer
123
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1
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how to include insertion and deletion in the consensus sequence from BWA reference mapping/assembly
genome assembly next-gen alignment sequencing written 12 days ago by liaoyunshi • 0 • updated 12 days ago by colindaven • 260
0
votes
0
answers
136
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0
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NEB Vs ScriptSeq
assembly alignment rna-seq written 12 days ago by poojasethiya • 10
0
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0
answers
139
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0
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how to calculate genome coding density
genome assembly rrna written 13 days ago by bsp017 • 20
0
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1
answer
178
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1
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Tools and parameters for reference assisted eukaryotic genome assembly using a draft genome as reference
assembly ngs written 9 weeks ago by WMJ • 10 • updated 13 days ago by colindaven • 260
0
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0
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170
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0
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How can I Annotate my miRNA data against MirBase?
genome assembly next-gen rna-seq sequence written 10 weeks ago by k.kathirvel93 • 30 • updated 14 days ago by Biostar ♦♦ 20
1
vote
1
answer
187
views
1
answer
where do i download gff3 file for whole human exons for tuxedo protocol (ngs rnaseq analysis)
gene genome chip-seq rna-seq assembly written 14 days ago by rahulraghavantv • 0 • updated 14 days ago by geek_y ♦ 7.8k
3
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0
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201
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0
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MIRA: Assembly from fasta file with identical names
fasta assembly mira written 15 days ago by Tamandua • 0
1
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0
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247
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0
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Combining paired reads with same coordinates
assembly sequencing written 15 days ago by hmkvsri • 0
0
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0
answers
234
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0
answers
how to explain expression level peaks(uneven gene expression) within a gene?
assembly expression rna-seq written 16 days ago by Alexie Li • 20
1
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0
answers
217
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0
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how can I output the merged.gtf of cuffmerge in another folder ?
gtf cufflinks alignment cuffmerge assembly written 16 days ago by cristian • 70
2
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1
answer
177
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1
answer
Variant calling in phased assemblies
genome assembly snp written 20 days ago by veronica.mixao • 20 • updated 16 days ago by colindaven • 260
11
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1
answer
1.3k
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5 follow
1
answer
Merge Scaffolds From Different Individuals?
consensus assembly contigs written 5.0 years ago by Gabriel R. • 1.9k
2
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0
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196
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0
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Forum: Crowdsourcing/Volunteer Bioinformatics - How to recognise volunteer effort and manage reliability of data
assembly genome forum volunteer alignment crowd-sourcing written 17 days ago by matiu • 10
0
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0
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160
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0
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SNP annotation and Candidate gene identification using different but closely related species?
genome assembly snp gene sequencing written 4 weeks ago by vetriventhan • 0 • updated 17 days ago by h.mon ♦ 8.0k
1
vote
2
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221
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2
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[PacBio assembly] Remaining indels after polishing
assembly polishing pacbio quiver written 11 weeks ago by Roxane Boyer • 240 • updated 18 days ago by amandine.velt • 10
0
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0
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139
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0
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Warning with cuffmerge: couldn't find fasta record
assembly cufflinks cuffmerge written 19 days ago by irving.jgalo23 • 0
0
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0
answers
113
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0
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canu correction process
genome assembly sequencing written 19 days ago by liaoyunshi • 0
4
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2
answers
257
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5 follow
2
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How to draw the chromosome specific coverage plot using GFF3 file
genome R assembly written 10 weeks ago by ajaybioinfo • 70
7
votes
2
answers
200
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2
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SNPEFF for de novo transcriptome annotation
assembly transcriptomics snp denovo written 23 days ago by Arsalan • 10 • updated 23 days ago by moushengxu • 260
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