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2
votes
1
answer
75
views
1
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Order a chromsome assembly with a chromosome assembly of a closely related species/
genome assembly written 3 days ago by cdjeu • 10 • updated 3 hours ago by lieven.sterck ♦ 10k
0
votes
1
answer
38
views
1
answer
Getting ENTREZ GENE IDs for data frame, any help?
gene R assembly written 6 hours ago by ymervenuryavuz • 0 • updated 5 hours ago by cpad0112 ♦ 15k
1
vote
2
answers
2.5k
views
2
answers
ERROR 127: ABYSS-P: error while loading shared libraries: libmpi.so.40: cannot open shared object file: No such file or directory
assembly abyss written 3.3 years ago by freuv • 20 • updated 16 hours ago by Biostar ♦♦ 20
0
votes
0
answers
60
views
0
answers
Extracting CDS from fragmented assemblies
assembly alignment written 17 hours ago by ebaldwin • 0
3
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3
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2.3k
views
3
answers
Optimizing De Novo Transcriptome assemblies for non model organisms
assembly rna-seq written 6.0 years ago by giorgiocasaburi • 90 • updated 1 day ago by Biostar ♦♦ 20
0
votes
1
answer
176
views
1
answer
SNPs id conversion from one database to another
genome assembly snp genotyping written 4 months ago by devarora • 320
0
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0
answers
108
views
0
answers
how to get the HBV infection information of the donors from ICGC database
gene genome sequence snp assembly written 10 days ago by smallblue0402 • 0 • updated 1 day ago by Biostar ♦♦ 20
0
votes
0
answers
71
views
0
answers
Focusing on a handful of genes during RNA seq
gene assembly rna-seq written 1 day ago by snow4964 • 0
1
vote
0
answers
36
views
0
answers
News: Online Training - Analysis of Transposable elements
genome assembly news sequence written 2 days ago by carlopecoraro2 • 2.0k
5
votes
1
answer
61
views
1
answer
How to sort fasta file numerically
genome assembly sequence written 3 days ago by williamsbrian5064 • 320 • updated 3 days ago by ATpoint ♦ 46k
0
votes
0
answers
50
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0
answers
Alignment of assembly on reference genome with MiniMap2 returns false unmapped contig
minimap2 assembly alignment written 3 days ago by gallinaro.martina • 0 • updated 3 days ago by h.mon ♦ 32k
0
votes
0
answers
43
views
0
answers
What is the meaning of miniasm -2S6 command?
oxford-nanopore assembly miniasm written 3 days ago by traditionalGuy • 20 • updated 3 days ago by GenoMax ♦ 96k
0
votes
1
answer
47
views
1
answer
Biomart mmusculus_gene_ensembl mm39
genome assembly forum R written 3 days ago by ced.gob.cg • 0 • updated 3 days ago by Emily_Ensembl ♦ 21k
2
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3
answers
715
views
5 follow
3
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Convert Braker2 gff3 to EMBL flat file for ENA submission
genome assembly gene written 23 months ago by m.eitel • 0
1
vote
2
answers
55
views
2
answers
Error in getBM: accessing Ensembl annotation with biomaRt
genome R gene rna-seq assembly written 4 days ago by celia.escher • 10
0
votes
0
answers
38
views
0
answers
SVDetect gives "Killed: 9" when I try to run it
software error assembly next-gen written 4 days ago by giusdalt95 • 0
4
votes
2
answers
89
views
2
answers
How to move multiple files to multiple folders in linux/mac?
genome assembly next-gen snp sequence written 5 days ago by anikcropscience • 40 • updated 5 days ago by Jeremy Leipzig ♦ 19k
0
votes
1
answer
56
views
1
answer
how to build matrices for DeSeq 2 from salmon quan.sf files
assembly written 5 days ago by slin023 • 0 • updated 5 days ago by ATpoint ♦ 46k
0
votes
0
answers
63
views
0
answers
How can I convert the transcript coordinate to a genomic coordinate?
assembly sequence rna-seq written 7 days ago by qwesxadzc9 • 0
4
votes
1
answer
76
views
1
answer
Help with Mr Bayes parameters for 16S phylogeny
mrbayes assembly sequence written 7 days ago by callmcgovern • 10
0
votes
0
answers
53
views
0
answers
Short sequence alignment using Minimap2
minimap2 assembly kmer pacbio grna written 7 days ago by Sbrillo • 0
0
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0
answers
81
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0
answers
Stacks: Denovo.pl M, m and n paramters
rad-seq assembly stacks snp written 8 days ago by virtualinterlect • 0
0
votes
0
answers
69
views
0
answers
Canu 2.1.1 Storage issue at correction/1-overlapper
genome assembly written 10 days ago by arteen.marashi • 0
0
votes
1
answer
74
views
1
answer
Does transcriptome assembly data contains introns?
assembly stringtie transcriptome rna-seq hisat2 written 10 days ago by noorussubah95 • 0 • updated 10 days ago by lieven.sterck ♦ 10k
8
votes
2
answers
10k
views
2
answers
Creating reference Index using Bowtie2
genome assembly next-gen alignment written 6.7 years ago by cvu • 180 • updated 10 days ago by Biostar ♦♦ 20
2
votes
1
answer
73
views
1
answer
How to convert gff3 format, PASApipeline
assembly rna-seq written 11 days ago by Ruixuan • 0 • updated 11 days ago by Juke34 • 5.2k
0
votes
1
answer
103
views
1
answer
bedtools genomecov max function not working correctly
bedtools assembly genomecov written 11 days ago by RBright21 • 10 • updated 11 days ago by ATpoint ♦ 46k
2
votes
1
answer
113
views
1
answer
Merging PacBio and Nanopore reads
assembly next-gen long reads nanopore pacbio written 21 days ago by Sbrillo • 0 • updated 12 days ago by harishk0201 • 110
0
votes
1
answer
81
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1
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Identify contaminants in my transcriptomic sequences
de-novo assembly transcriptome written 12 days ago by Rogerio Ribeiro • 30 • updated 12 days ago by GenoMax ♦ 96k
0
votes
0
answers
153
views
0
answers
whole genome sequencing data analysis
assembly written 25 days ago by ipb727258 • 0 • updated 12 days ago by Biostar ♦♦ 20
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