Showing: assemblyreset
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81
votes
9
answers
23k
views
31 follow
9
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How To Assess The Quality Of An Assembly? (Is There No Magic Formula?)
assembly quality next-gen written 6.6 years ago by diltsjeri440 • updated 13 months ago by alslonik110
47
votes
5
answers
21k
views
21 follow
5
answers
News: The New Grch38 Human Genome Browser Has Arrived!
assembly news grch38 hg38 ucsc written 5.5 years ago by Giovanni M Dall'Olio26k • updated 3.7 years ago by Jeremy Leipzig18k
12
votes
1
answer
21k
views
1
answer
what is the difference between GRCh37 and hg19 ?
genome assembly alignment rna-seq written 4.7 years ago by jack760 • updated 16 months ago by gandrescabrera80
22
votes
3
answers
20k
views
5 follow
3
answers
What Does The "N50" Mean?
assembly written 9.4 years ago by Bioch'Ti1000 • updated 8.6 years ago by Ketil4.0k
72
votes
10
answers
16k
views
40 follow
10
answers
Assessing The Quality Of De Novo Assembled Data
assembly next-gen written 7.2 years ago by Prakki Rama2.3k • updated 12 months ago by Corentin380
25
votes
0
answers
15k
views
22 follow
0
answers
Tool: Tools to merge overlapping paired-end reads
assembly overlapping ngs fastq tool written 2.7 years ago by Abdul Rafay Khan1.0k • updated 12 months ago by kate.j.mckenzie10
13
votes
4
answers
15k
views
6 follow
4
answers
Bowtie2 parameters for best alignment
genome assembly alignment blog snp written 5.2 years ago by cvu140 • updated 15 months ago by saraholiver3070
18
votes
2
answers
15k
views
2
answers
nr- protein database
assembly next-gen blast sequencing written 4.0 years ago by akhilvbioinfo140 • updated 2.4 years ago by gu.fernandezn0
36
votes
9
answers
13k
views
11 follow
9
answers
Circular Genome??
genome assembly written 8.5 years ago by Bdv290 • updated 4.2 years ago by 5heikki8.5k
38
votes
10
answers
13k
views
27 follow
10
answers
Recommendations For Heterozygous Genome Assembly Software
genome assembly miseq illumina written 6.6 years ago by Leszek4.0k • updated 19 months ago by dmathog30
41
votes
12
answers
12k
views
23 follow
12
answers
Which Assembler To Use For Metagenomic Sequences?
assembly metagenomics written 9.4 years ago by Panos1.7k • updated 6.0 years ago by ugly.betty771.0k
44
votes
7
answers
12k
views
25 follow
7
answers
Best software to assemble bacterial genomes
illumina bacteria assembler assembly written 4.8 years ago by fhsantanna440 • updated 19 months ago by Biostar ♦♦ 20
51
votes
10
answers
12k
views
14 follow
10
answers
What tools you use or know for PacBio Long Read error correction?
software assembly sequence sequencing written 4.6 years ago by Medhat8.4k • updated 4.3 years ago by pengchy410
0
votes
1
answer
12k
views
1
answer
Kobas.2.0 : KEGG annotation
assembly next-gen go rna-seq sequencing written 3.1 years ago by jinutchirayath0 • updated 3.1 years ago by WouterDeCoster40k
9
votes
0
answers
11k
views
0
answers
News: Bio-Linux 8 is now available
assembly next-gen genome news alignment rna-seq written 5.1 years ago by rtliu2.0k • updated 4.3 years ago by liangqinsi20
6
votes
1
answer
11k
views
1
answer
Files ending with .fna.gz, .gbff.gz, .gff.gz, .faa.gz & gpff.gz
assembly sequence written 3.3 years ago by Naresh60 • updated 3.3 years ago by Michael Dondrup46k
7
votes
1
answer
10k
views
1
answer
Newbler Download
assembly differential-expression written 6.7 years ago by Nino20 • updated 6.7 years ago by Manu Prestat3.9k
14
votes
1
answer
9.8k
views
1
answer
Error while running BWA mem
assembly next-gen alignment sequencing written 4.2 years ago by ravi.uhdnis170 • updated 11 months ago by RamRS23k
4
votes
1
answer
9.4k
views
1
answer
Where can I download the NCBI reference genome for mouse GRCm38
genome assembly written 4.2 years ago by lojomorris0 • updated 4.2 years ago by Evgeniia Golovina990
24
votes
3
answers
9.4k
views
10 follow
3
answers
Mapping Reads Back To Assembly Contigs
assembly contigs mapping read written 7.4 years ago by David M550 • updated 7.4 years ago by ALchEmiXt1.9k
7
votes
2
answers
9.4k
views
2
answers
STAR aligner generating genomes takes long time
assembly rna-seq written 3.7 years ago by xcalle9120 • updated 16 months ago by msimmer92200
11
votes
3
answers
9.3k
views
3
answers
Annotate .bed file with gene names
genome assembly next-gen written 4.8 years ago by stevenlang123150 • updated 2.1 years ago by windsur10
2
votes
2
answers
8.9k
views
2
answers
8
votes
4
answers
8.9k
views
6 follow
4
answers
16
votes
2
answers
8.8k
views
2
answers
How does kmer length affect total assembly size?
assembly (velvet) written 4.3 years ago by StarCute110 • updated 4.3 years ago by Antonio R. Franco4.1k
48
votes
3
answers
8.7k
views
29 follow
3
answers
Tutorial: Genome Assembly Review Papers
assembly tutorial papers written 7.0 years ago by Istvan Albert ♦♦ 81k • updated 6.5 years ago by lh331k
26
votes
7
answers
8.5k
views
15 follow
7
answers
What Is The Most Memory-Efficient De Novo Assembler?
assembly memory hiseq written 8.4 years ago by toshnam620 • updated 8.3 years ago by Shaldenby10
8
votes
2
answers
8.4k
views
2
answers
Creating reference Index using Bowtie2
genome assembly next-gen alignment written 5.2 years ago by cvu140 • updated 4.7 years ago by SP250
48
votes
13
answers
8.1k
views
16 follow
13
answers
What is the best programming language for NGS data analysis pipeline development?
assembly rna-seq written 5.3 years ago by jack760 • updated 5.3 years ago by Bj√∂rn650
5
votes
2
answers
8.1k
views
2
answers
Generate consensus from BAM file
consensus assembly galaxy sam-tools written 4.6 years ago by blur110 • updated 4.6 years ago by thackl2.7k
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