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written 3.5 years ago by
adp117 • 0
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3.5 years ago by
Michael Dondrup ♦ 46k
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- C: Identifying codons from rna-seq data (bed/bam file)
- C: check deseq2 design please
- C: check deseq2 design please
- C: Paired Reads have different names - but names are vastly different
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Recent Replies
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A: merging VCF files or not by
zubairzube • 0
yes you can do it, by using git bash to merge all vcf/HapMap files in one file. cat *hmp.txt >...
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C: Correlation of modules calculated in separate WGCNA runs by
Kevin Blighe ♦ 51k
Sure thing - no worries. Hope all is well back in London.
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C: check deseq2 design please by
Kevin Blighe ♦ 51k
- Why are you using a cut-off of adjusted p<0.1? - You do not define `sig2` anywhere in your...
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A: GSVA and SSGSEA for RNA-Seq TPM data by
Kevin Blighe ♦ 51k
When you run *GSVA*, it will enrich your input data against every gene signature / pathway in the...
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A: Extract sequences consecutively from a large fasta files and save in new fasta f by
Chirag Parsania • 1.7k
**R way** sp1_fa <- Biostrings::readBStringSet("species1.fasta") sp2_fa <- Bi...
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C: EdgeR for single cell differential expression analysis by
Amar • 400
Can you post a snippet of what your `design` looks like? and also `my.contrasts`. I think without...
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C: check deseq2 design please by
Asaf ♦ 6.4k
Your design is reasonable. It would be better to post only the design, you can't expect users to ...
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C: Clipping reads within BAM files? by
manuel.belmadani • 1.1k
Try something like this on your FASTQ files: [fastx-toolkit: fastx-trimmer][1] , it'll let you re...
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C: intersecting two GFF3 missing data from the second file by
Ric • 280
Thank you for your explanation. I think the output from your script is correct if mRNA has an opp...
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C: Automatic IGV snapshot script by
steve • 2.4k
The usage of .bam files or any other format is entirely dependent on IGV. Have you tried using it...
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A: check deseq2 design please by
Davide • 10
Sorry but can someone check my design? I am still unclear on exactly how to identify the differen...
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C: Displaying structural variants with JBrowse by
cmdcolin • 1.3k
I will send you a link to a signup form soon regarding this
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