Showing: atac-seqreset
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Finding differences in motif enrichment between ATAC peak samples?
homer atac-seq written 11 months ago by a.rex190 • updated 2 days ago by danvoronov10
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ATAC-seq macs2 peak splitting in sliding windows
atac-seq written 9 days ago by nancy0 • updated 2 days ago by danvoronov10
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ATAC-seq : strategies to have the list of the expressed genes
atac-seq sequencing written 16 months ago by anais139620 • updated 5 weeks ago by bm1160
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Number of Tn5 insertions in TCGA ATAC-Seq data
tcga atac-seq sequencing written 6 weeks ago by Mike1.3k • updated 6 weeks ago by ATpoint23k
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How can I find motifs under individual ATAC-peaks?
atac-seq written 11 months ago by a.rex190 • updated 6 weeks ago by gable_works20
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Assignment of distal regions to genes
atac-seq rna-seq tad written 7 weeks ago by ATpoint23k • updated 7 weeks ago by geek_y9.8k
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ATAC-Seq trimming reads to 36bp
atac-seq written 7 weeks ago by Bioinfo_2006100
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Peak calling for multiple replicates with Genrich
atac-seq peak-caling genrich written 4 months ago by linelr0 • updated 7 weeks ago by Friederike5.1k
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csaw - Htslib import errors and missing reads/chromosomes
csaw bam chip-seq atac-seq library written 14 months ago by reskejak20 • updated 9 weeks ago by xuzhougeng0
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Insert Size Metrics of ATAC-Seq data
picard atac-seq written 11 weeks ago by Bioinfo_2006100 • updated 11 weeks ago by igor8.3k
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Spikes in Insertsize too high
atac-seq written 11 weeks ago by xpan0 • updated 11 weeks ago by ATpoint23k
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ATAC-seq vs Bisulfite-sequencing
epigenomics atac-seq bisulfite-seq rna-seq written 3 months ago by rtrende10 • updated 3 months ago by Charles Warden7.2k
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ATAC-seq library preparation, and the number of cells
atac-seq written 3 months ago by deepseany0 • updated 3 months ago by ATpoint23k
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ATAC-seq fragment length distribution
atac-seq written 13 months ago by Grinch70
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Insert size of ~20bp with ATAC-seq?
alignment atac-seq sequencing written 6 months ago by a.rex190 • updated 6 months ago by ATpoint23k
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Question about combining (technical?) replicates
merge atac-seq written 6 months ago by collmerr20 • updated 6 months ago by JC8.4k
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Iterative trimming using bowtie
bowtie2 iterative trimming alignment atac-seq written 8 months ago by ancient_learner610 • updated 6 months ago by Biostar ♦♦ 20
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