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How to add a flag to a sam/bam file
flag samtools atac-seq filtering written 8 weeks ago by nanoide40 • updated 5 days ago by Biostar ♦♦ 20
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ATAC-seq +4 -5 shift
atac-seq written 7 days ago by Jingyue30
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Picard Base Distribution by Cycle and adapter contamination
picard atac-seq written 15 days ago by ElCascador20 • updated 14 days ago by h.mon29k
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MACS2 --nolambda fold enrichment cutoff
macs2 atac-seq written 4 weeks ago by emre.cto0 • updated 4 weeks ago by ATpoint31k
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ATAC-Seq kmer removal
kmers fastqc atac-seq trim cutadapt written 5 weeks ago by elenichri10 • updated 4 weeks ago by h.mon29k
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Creating a bedgraph
atac-seq written 6 weeks ago by cf55610
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Filtering TRANSFAC to get human TF motifs only
meme chip-seq atac-seq transfac written 11 weeks ago by ahmed.saadawi0 • updated 6 weeks ago by Biostar ♦♦ 20
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ATAC-seq 150bp reads
next-gen chip-seq atac-seq sequencing written 9 weeks ago by ta_awwad250 • updated 9 weeks ago by igor9.8k
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ATAC-seq sample normalization (quantil normalization)
normalization chip-seq atac-seq written 3 months ago by Flo50 • updated 9 weeks ago by Malcolm.Cook1.1k
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Get MACs2 peaks associated with specific genes
macs2 peaks atac-seq written 12 weeks ago by ahmed.saadawi0 • updated 10 weeks ago by Biostar ♦♦ 20
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Low number of peaks and weird TSS profile
atac-seq written 11 weeks ago by mickey_9510 • updated 11 weeks ago by ATpoint31k
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Strange output from Homer findPeaks
atacseq homer atac-seq written 4 months ago by fr130 • updated 3 months ago by panxingxin160
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Chromvar for single cell ATAC seq
chromvar single-cell atac-seq atac-seq written 3 months ago by jmah10 • updated 3 months ago by AidanQuinn40
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Heterogeneity from bulk ChIP-seq or ATAC-seq data
heterogeneity chip-seq atac-seq clustering written 4 months ago by msimmer92250 • updated 4 months ago by jared.andrews075.3k
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DESeq2 design matrix
deseq2 de analysis atac-seq written 5 months ago by mickey_9510 • updated 5 months ago by ATpoint31k
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PeakNarrow ATAC-Seq analysis
atac-seq narrowpeak written 2.5 years ago by Spacebio180 • updated 5 months ago by ATpoint31k
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