Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 169 results • page 1 of 6 • next >
2
votes
0
answers
101
views
0
answers
How to add a flag to a sam/bam file
flag samtools atac-seq filtering written 8 weeks ago by nanoide • 40 • updated 5 days ago by Biostar ♦♦ 20
1
vote
0
answers
103
views
0
answers
ATAC-seq +4 -5 shift
atac-seq written 7 days ago by Jingyue • 30
3
votes
0
answers
148
views
0
answers
Visualize top 10 increasing peaks of the ATAC-seq data
deeptools atac-seq heatmap written 9 days ago by kinalimeric • 20
1
vote
1
answer
66
views
1
answer
Picard Base Distribution by Cycle and adapter contamination
picard atac-seq written 15 days ago by ElCascador • 20 • updated 14 days ago by h.mon ♦ 29k
4
votes
2
answers
2.7k
views
2
answers
Normalization and differential analysis in ATAC-seq data
peak calling atac-seq differential expression written 23 months ago by anais1396 • 20 • updated 18 days ago by ATpoint ♦ 31k
1
vote
0
answers
106
views
0
answers
linking ATAC-seq peaks to nearest gene
atac-seq peak to gene written 26 days ago by BrunoGiotti • 110
2
votes
1
answer
80
views
1
answer
MACS2 --nolambda fold enrichment cutoff
macs2 atac-seq written 4 weeks ago by emre.cto • 0 • updated 4 weeks ago by ATpoint ♦ 31k
1
vote
1
answer
99
views
1
answer
ATAC-Seq kmer removal
kmers fastqc atac-seq trim cutadapt written 5 weeks ago by elenichri • 10 • updated 4 weeks ago by h.mon ♦ 29k
2
votes
1
answer
69
views
1
answer
Creating a bedgraph
atac-seq written 6 weeks ago by cf556 • 10
0
votes
1
answer
108
views
1
answer
Filtering TRANSFAC to get human TF motifs only
meme chip-seq atac-seq transfac written 11 weeks ago by ahmed.saadawi • 0 • updated 6 weeks ago by Biostar ♦♦ 20
0
votes
1
answer
100
views
1
answer
Snakemake - parameter file treated as a wildcard
atac-seq snakemake pipelines written 7 weeks ago by kzkedzierska • 160
1
vote
1
answer
145
views
1
answer
Homer software -size parameter
gene chip-seq atac-seq sequencing written 8 weeks ago by yanweng • 40
6
votes
3
answers
262
views
7 follow
3
answers
ATAC-seq 150bp reads
next-gen chip-seq atac-seq sequencing written 9 weeks ago by ta_awwad • 250 • updated 9 weeks ago by igor ♦ 9.8k
19
votes
2
answers
513
views
16 follow
2
answers
ATAC-seq sample normalization (quantil normalization)
normalization chip-seq atac-seq written 3 months ago by Flo • 50 • updated 9 weeks ago by Malcolm.Cook • 1.1k
0
votes
1
answer
180
views
1
answer
Get MACs2 peaks associated with specific genes
macs2 peaks atac-seq written 12 weeks ago by ahmed.saadawi • 0 • updated 10 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
292
views
0
answers
Job: Bioinformatician Positions at the University of Chicago BSD Bioinformatics Core
atac-seq proteomics job rna-seq microbiome dna-seq written 12 weeks ago by lhuang7 • 0 • updated 11 weeks ago by fu_entomology • 20
0
votes
0
answers
193
views
0
answers
Integration analysis of atac-seq, rna-seq, and methylation data at specific gene regions
methylation atac-seq rna-seq integration_analysis written 3 months ago by maria2019 • 90
0
votes
1
answer
236
views
1
answer
Low number of peaks and weird TSS profile
atac-seq written 11 weeks ago by mickey_95 • 10 • updated 11 weeks ago by ATpoint ♦ 31k
1
vote
0
answers
158
views
0
answers
Homer's findPeaks: normalized Tag counts, Peak Score, and RPKMs
homer chip-seq atac-seq written 12 weeks ago by fr • 130
0
votes
0
answers
172
views
0
answers
Strange output from Homer findPeaks
atacseq homer atac-seq written 4 months ago by fr • 130 • updated 3 months ago by panxingxin16 • 0
0
votes
0
answers
109
views
0
answers
meaning of "Total subpeaks" in Homer's mergePeaks?
homer chip-seq atac-seq written 3 months ago by fr • 130
1
vote
0
answers
184
views
0
answers
Does Chromvar require bulk ATAC-seq?
chromvar scatac-seq atac-seq written 3 months ago by jmah • 10
0
votes
1
answer
227
views
1
answer
Chromvar for single cell ATAC seq
chromvar single-cell atac-seq atac-seq written 3 months ago by jmah • 10 • updated 3 months ago by AidanQuinn • 40
13
votes
0
answers
1.2k
views
14 follow
0
answers
Tutorial: Using EnrichedHeatmap for visualization of NGS experiments
tutorial enrichedheatmap chip-seq atac-seq heatmap written 7 months ago by ATpoint ♦ 31k
7
votes
0
answers
416
views
5 follow
0
answers
ATAC-seq TSS profile plot interpretation
tss atac-seq v-plot written 4 months ago by nanoide • 40
1
vote
1
answer
242
views
1
answer
Heterogeneity from bulk ChIP-seq or ATAC-seq data
heterogeneity chip-seq atac-seq clustering written 4 months ago by msimmer92 • 250 • updated 4 months ago by jared.andrews07 ♦ 5.3k
4
votes
2
answers
290
views
2
answers
DESeq2 design matrix
deseq2 de analysis atac-seq written 5 months ago by mickey_95 • 10 • updated 5 months ago by ATpoint ♦ 31k
1
vote
1
answer
2.3k
views
1
answer
Deeptools error - Solving environment: failed with initial frozen solve
deeptools atac-seq python error written 5 months ago by dydy_cristina • 0 • updated 5 months ago by yztxwd • 300
4
votes
2
answers
1.0k
views
5 follow
2
answers
PeakNarrow ATAC-Seq analysis
atac-seq narrowpeak written 2.5 years ago by Spacebio • 180 • updated 5 months ago by ATpoint ♦ 31k
0
votes
0
answers
310
views
0
answers
Job: Postdoctoral opportunity in Computational Epigenomics at NIH, Baltimore
sequencing next-gen job rna-seq atac-seq written 5 months ago by mia86sung • 10
<prev • 169 results • page 1 of 6 • next >
Recent Votes
Recent Locations • All »
  • EMBL-EBI, just now
  • National University of Ireland, Galway, 1 minute ago
  • Belgium, Brussels, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1744 users visited in the last hour