Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: atac-seq • reset
or   Classic search
<prev • 130 results • page 1 of 5 • next >
3
votes
2
answers
187
views
2
answers
ATAC-seq vs Bisulfite-sequencing
epigenomics atac-seq bisulfite-seq rna-seq written 23 days ago by rtrende • 0 • updated 11 days ago by Charles Warden ♦ 6.8k
1
vote
1
answer
94
views
1
answer
ATAC-seq library preparation, and the number of cells
atac-seq written 18 days ago by deepseany • 0 • updated 17 days ago by ATpoint ♦ 17k
1
vote
0
answers
102
views
0
answers
What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq data?
10x atac-seq written 4 weeks ago by BioinformaticsLad • 130 • updated 4 weeks ago by Devon Ryan ♦ 90k
0
votes
0
answers
76
views
0
answers
ATACseqQC factorFootprints function
footprint atac-seq atacseqqc written 4 weeks ago by nanoide • 30
4
votes
1
answer
1.6k
views
1
answer
ATAC-seq fragment length distribution
atac-seq written 10 months ago by Grinch • 60
0
votes
0
answers
84
views
0
answers
Peak calling for multiple replicates with Genrich
atac-seq peak-caling genrich written 4 weeks ago by linelr • 0
1
vote
0
answers
235
views
0
answers
Job: Bioinformatician / Data Manager Position Open - Mount Sinai, New York
chip-seq pipeline atac-seq rna-seq job written 10 weeks ago by jaroslav.bendl • 10
2
votes
2
answers
282
views
2
answers
ATAC-seq : which read length?
atac-seq sequencing written 12 weeks ago by guillaume.rbt • 590
4
votes
1
answer
377
views
1
answer
Insert size of ~20bp with ATAC-seq?
alignment atac-seq sequencing written 3 months ago by a.rex • 190 • updated 3 months ago by ATpoint ♦ 17k
3
votes
1
answer
189
views
1
answer
Question about combining (technical?) replicates
merge atac-seq written 3 months ago by collmerr • 20 • updated 3 months ago by JC ♦ 7.9k
5
votes
1
answer
225
views
1
answer
Differences between motif enrichment analysis and footprinting in the context of DNAse-seq/ATAC-seq
atac-seq footprinting dnase-seq motifs written 3 months ago by nanoide • 30 • updated 3 months ago by geek_y ♦ 9.7k
5
votes
1
answer
409
views
1
answer
What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 3 months ago by Gary • 450 • updated 3 months ago by h.mon ♦ 25k
1
vote
0
answers
270
views
0
answers
Iterative trimming using bowtie
bowtie2 iterative trimming alignment atac-seq written 4 months ago by ancient_learner • 610 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
137
views
0
answers
Can F-seq appers the p-value for each peak in the output?
chip-seq atac-seq written 3 months ago by vw • 20
0
votes
0
answers
198
views
0
answers
What's the meaning of column "score" of output bed file from F-seq
chip-seq atac-seq peakcalling written 3 months ago by vw • 20
3
votes
0
answers
195
views
0
answers
Remove duplicate readnames from a bam file
duplicates bam atac-seq duplicate read names written 3 months ago by garnerim1988 • 0
8
votes
1
answer
670
views
1
answer
MACS2 option for ATAC seq?
chip-seq peak-calling macs2 endcode atac-seq written 4 months ago by star • 150
0
votes
0
answers
403
views
0
answers
ATAC-seq transcription factor binding prediction
transcription factor atac-seq rna-seq written 7 months ago by Lucy • 0 • updated 4 months ago by am2622 • 0
0
votes
0
answers
250
views
0
answers
Job: Bioinformatics and Biostatistics Analysts & Research Scientists in Systems Immunology, Allen Inst for Immunology
next-gen atac-seq R job facs rna-seq written 4 months ago by hbolouri • 0
0
votes
1
answer
177
views
1
answer
Differential Binding in Partek
partek chip-seq atac-seq written 4 months ago by DVA • 520 • updated 4 months ago by kgosche • 0
7
votes
1
answer
367
views
1
answer
Duplicated ATAC-Seq peaks called by MACS2
macs peak calling macs2 atac-seq written 4 months ago by Gary • 450 • updated 4 months ago by geek_y ♦ 9.7k
1
vote
1
answer
240
views
1
answer
Merging peak files for unionized set
bedtools next-gen atac-seq written 4 months ago by aam458 • 0 • updated 4 months ago by trausch • 1.3k
0
votes
0
answers
219
views
0
answers
How to compare footprints (motifs found) from two different packages after peak calling using MACS2?
chip-seq atac-seq written 4 months ago by vatsal.mehra • 0
1
vote
0
answers
267
views
0
answers
Homer annotatePeaks.pl custom GTF
gtf homer atac-seq written 4 months ago by Lucy • 0
0
votes
0
answers
330
views
0
answers
Aligning RNA-seq and ATAC-seq gene annotations
homer gene annotation atac-seq rna-seq written 5 months ago by Lucy • 0
1
vote
2
answers
579
views
2
answers
comparing ATAC-seq/ChIP-seq peaks
chip-seq atac-seq written 5 months ago by sckinta • 510 • updated 5 months ago by ATpoint ♦ 17k
3
votes
0
answers
375
views
0
answers
Finding motifs with Homer for obscure species.
genome homer atac-seq written 7 months ago by a.rex • 190 • updated 5 months ago by Biostar ♦♦ 20
5
votes
0
answers
872
views
6 follow
0
answers
Explaining fragment distribution plots from ATAC-seq
atac-seq written 7 months ago by a.rex • 190 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
answers
214
views
0
answers
CENTIPEDE - values from fitCentipede
R atac-seq centipede written 7 months ago by Lucy • 0 • updated 5 months ago by Biostar ♦♦ 20
2
votes
1
answer
515
views
1
answer
Bigwig format and operation
bigwig chip-seq atac-seq written 6 months ago by oriolebaltimore • 60
<prev • 130 results • page 1 of 5 • next >
Recent Votes
Recent Locations • All »
  • Ghent, Belgium, just now
  • United Kingdom, 1 minute ago
  • Republic of Ireland, 1 minute ago
  • kansas, usa, 3 minutes ago
  • Mexico, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2043 users visited in the last hour