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<prev • 206 results • page 1 of 7 • next >
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40
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Annotating peaks with genes
singlecell atac atac-seq multiome written 4 days ago by V • 230 • updated 4 days ago by jared.andrews07 ♦ 8.3k
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2
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875
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5 follow
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ATAC-seq +4 -5 shift
atac-seq written 9 months ago by Jingyue • 30 • updated 13 days ago by Devon Ryan ♦ 98k
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108
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Sources for DNA accessibility data for certain Orgnisms
encode dnase-seq atac-seq written 4 weeks ago by kimkes25 • 0 • updated 4 weeks ago by ATpoint ♦ 44k
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109
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How to get enrichment of ERVs in differentially expressed peaks from ATAC-seq data?
chip-seq atac-seq ervs written 4 weeks ago by fdemiguelsdp • 0
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ChIPSeeker Help for Annotating Peaks
software error chip-seq atac-seq written 4 weeks ago by saifdab99 • 0 • updated 4 weeks ago by rpolicastro ♦ 3.1k
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123
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Recommendations on FAIRE-seq/ATAC-seq optimal coverage for large genome
faire-seq atac-seq coverage written 6 weeks ago by nanoide • 60
1
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218
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1
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Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, respectively
atac-seq written 6 weeks ago by progistar • 0 • updated 6 weeks ago by benformatics • 2.0k
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142
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ATAC-seq quality filtering
atac-seq written 9 weeks ago by rafaelsolersanblas • 20
2
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1
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173
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1
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ATAC-seq problem with STAR - Multimapping reads
chip-seq atac-seq star written 9 weeks ago by rafaelsolersanblas • 20
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Tool: DiffBind 3.0: Extensive updates in Bioconductor 3.12
chipseq diffbind chip-seq atac-seq tool written 11 weeks ago by Rory Stark • 900
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148
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How can I filter/extract called peaks based on their peak height?
peak calling peak height macs2 atac-seq written 11 weeks ago by jiekwo1 • 0
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197
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Genrich analyse ATAC-seq data problem
genrich atac-seq written 11 weeks ago by MatthewP • 840
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130
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Comparing Many Bed Files from GEO
geo bed chip-seq atac-seq meta-analysis written 12 weeks ago by cthangav • 0
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14 follow
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Tutorial: Using EnrichedHeatmap for visualization of NGS experiments
tutorial enrichedheatmap chip-seq atac-seq heatmap written 17 months ago by ATpoint ♦ 44k
0
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Chromvar for single cell ATAC seq
chromvar single-cell atac-seq atac-seq written 13 months ago by jmah • 10 • updated 3 months ago by Biostar ♦♦ 20
3
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232
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5 follow
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Tn5 bias in atac-seq
tn5 next-gen atac-seq written 3 months ago by srhic • 20
5
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1
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242
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1
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Why are there duplicate peaks in ENCODE ATAC-seq output?
encode atac-seq written 3 months ago by sswanson • 20 • updated 3 months ago by ATpoint ♦ 44k
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192
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ATAC-seq many reads first base is "N"
atac-seq written 3 months ago by MatthewP • 840
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problem with HOMER findMotifsGenome.pl
homer atac-seq written 2.3 years ago by ste.lu • 60 • updated 3 months ago by radicav06 • 0
4
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5 follow
1
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Bowtie2 alignment help for ATAC-seq
bowtie2 alignment data analysis atac-seq written 15 months ago by mrs.whirly • 0 • updated 3 months ago by ElCascador • 20
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185
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Errors when installing EnsDb.Hsapiens.v75
software error alignment atac-seq written 4 months ago by yzhao140 • 0 • updated 4 months ago by GenoMax ♦ 94k
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358
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1
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Getting different values from deeptools bamCoverage CPM normalization, and from manually normalizing using samtools mpileup
deeptools bamcoverage atac-seq normalization cpm written 4 months ago by rjd254 • 0 • updated 4 months ago by ATpoint ♦ 44k
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3.2k
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31 follow
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ATAC-seq sample normalization
normalization chip-seq atac-seq written 13 months ago by Flo • 90 • updated 4 months ago by ATpoint ♦ 44k
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1.1k
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1
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Dual indexing i5/i7 with ATAC-seq
dual indexing hiseq x-ten i7 i5 atac-seq written 4 months ago by e.antunes • 0
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243
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How to perform analysis for repetitive elements in ATAC-Seq data?
repeat-elements atac-seq written 4 months ago by Deepak Tanwar • 4.1k
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247
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How to do read-in-peak normalization?
atac-seq written 5 months ago by xiaoxiaoxiaobu • 0
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1
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178
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1
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Sequencing Human/Mouse ATAC libraries together?
alignment atac atac-seq human mouse written 5 months ago by e.antunes • 0
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257
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Dealing with multimapped reads with Chip-seq and ATAC-seq data when studying Transposable Elements
transposable elements chip-seq atac-seq written 5 months ago by ahnje770 • 0
0
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241
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ATAC-Seq Data looking like RNA-Seq data...?
sequence atac-seq tss written 6 months ago by katywithawhy11 • 0 • updated 6 months ago by science_lizard • 0
0
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345
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Differential accessibility analysis with Genrich peaks
atac-seq genrich written 6 months ago by eyleen.corrales • 20
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