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3
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433
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6 follow
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ATACseqQC - Cut-site probability greater than 1?
atac-seq atacseqqc written 9 months ago by ldyer2006 • 30 • updated 14 days ago by Lizzy • 0
2
votes
1
answer
135
views
1
answer
High PCR duplication rate in ATAC-seq library
sequencing next-gen atac-seq pcr duplicate written 17 days ago by ttsutsui1028 • 10 • updated 17 days ago by ATpoint ♦ 11k
0
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0
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169
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0
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Explaining PCA plots made from BigWig coverage files in DeepTools
deeptools atac-seq written 27 days ago by a.rex • 170 • updated 27 days ago by RamRS ♦ 19k
0
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0
answers
85
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0
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ATAC-seq transcription factor binding prediction
transcription factor atac-seq rna-seq written 4 weeks ago by Lucy • 0
0
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0
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120
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0
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Is it common for ATAC-peaks to be located in Repeat Masker annotated regions?
genome atac-seq written 5 weeks ago by a.rex • 170
2
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2
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185
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2
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Seemingly contradictory ATAC-seq conclusions from a Science journal paper?
atac-seq written 5 weeks ago by solo7773 • 60 • updated 5 weeks ago by ATpoint ♦ 11k
0
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0
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186
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0
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Integrative analysis of omics studies using machine learning
chip-seq atac-seq rna-seq machine learning written 6 weeks ago by Firas • 0
0
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0
answers
113
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0
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CENTIPEDE - values from fitCentipede
R atac-seq centipede written 7 weeks ago by Lucy • 0
2
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0
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132
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0
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Finding motifs with Homer for obscure species.
genome homer atac-seq written 7 weeks ago by a.rex • 170
0
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0
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157
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0
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Fseq versus MACS2 for ATAC-seq
atac-seq written 7 weeks ago by a.rex • 170
5
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0
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192
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5 follow
0
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Explaining fragment distribution plots from ATAC-seq
atac-seq written 7 weeks ago by a.rex • 170
6
votes
1
answer
267
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5 follow
1
answer
Using featureCounts and DESeq2 to look at differences between ATAC-seq conditions.
R next-gen atac-seq written 7 weeks ago by a.rex • 170 • updated 7 weeks ago by ATpoint ♦ 11k
3
votes
1
answer
250
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1
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Acceptable duplication levels in ATAC-Seq data
sequencing atac-seq pcr duplicates written 8 weeks ago by bowwow • 0 • updated 8 weeks ago by Devon Ryan ♦ 86k
1
vote
1
answer
246
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1
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Finding differences in motif enrichment between ATAC peak samples?
homer atac-seq written 9 weeks ago by a.rex • 170 • updated 9 weeks ago by James Ashmore • 2.5k
3
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1
answer
165
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1
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Correlating putative enhancer elements with gene expression
enhancer gene expression atac-seq rna-seq written 9 weeks ago by rbronste • 230 • updated 9 weeks ago by kristoffer.vittingseerup • 1.0k
3
votes
3
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235
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3
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How can I find motifs under individual ATAC-peaks?
atac-seq written 9 weeks ago by a.rex • 170 • updated 9 weeks ago by jared.andrews07 • 1.7k
0
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0
answers
196
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0
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problem with HOMER findMotifsGenome.pl
homer atac-seq written 9 weeks ago by ste.lu • 20
4
votes
1
answer
460
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5 follow
1
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Can be merged biological replicates?
chip-seq macs2 peak-calling atac-seq rna-seq written 3 months ago by star • 70 • updated 11 weeks ago by ZZzzzzhong • 170
0
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0
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161
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0
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featureCounts allowMultiOverlap - fractional or not?
featurecounts atac-seq written 11 weeks ago by Lucy • 0
1
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2
answers
449
views
2
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FRIP score ATAC-seq
frip atac-seq written 3 months ago by Lucy • 0 • updated 12 weeks ago by chaton • 0
7
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2
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2.5k
views
2
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mitochondrial blacklists ATAC-Seq
atac-seq written 2.8 years ago by simonjean434 • 50 • updated 3 months ago by RamRS ♦ 19k
0
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1
answer
234
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1
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shift direction in ATAC/DNase data?
macs2 chip-seq atac-seq dnase-seq written 3 months ago by star • 70
1
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0
answers
586
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0
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ATAC-seq fragment length distribution
atac-seq written 4 months ago by Grinch • 20
4
votes
1
answer
216
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1
answer
The problem of atac-seq analysis process steps with macs2
chip-seq atac-seq written 4 months ago by 1106518271 • 50 • updated 4 months ago by Devon Ryan ♦ 86k
0
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0
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224
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0
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Interpreting ATAC-seq alignment results
atac-seq genomics written 4 months ago by hara • 0
0
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1
answer
252
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1
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Peak call? or Just convert to bedfile by bedtools bamtobed? to generate the accessibility matrix of single-end single cell ATAC-seq
atac-seq single cell written 5 months ago by soya • 0 • updated 4 months ago by Devon Ryan ♦ 86k
9
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1
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652
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6 follow
1
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Problem with the installation of Zinba(peak caller) on R
peak-calling atac-seq sequencing written 10 months ago by anais1396 • 20 • updated 5 months ago by Young • 0
16
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3
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315
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5 follow
3
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how can I transfer this different steps bedgraph format into 1bp file?
atac-seq linux written 5 months ago by 1106518271 • 50 • updated 5 months ago by cpad0112 • 10k
3
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1
answer
321
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1
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How to compare bigwig tracks of two ATAC libraries.
atac-seq written 5 months ago by a.rex • 170 • updated 5 months ago by ATpoint ♦ 11k
0
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1
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332
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1
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csaw - Htslib import errors and missing reads/chromosomes
csaw bam chip-seq atac-seq library written 5 months ago by reskejak • 10
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