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ATAC-seq fragment length distribution
atac-seq written 3 days ago by Grinch • 10
4
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67
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1
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The problem of atac-seq analysis process steps with macs2
chip-seq atac-seq written 7 days ago by 1106518271 • 30 • updated 7 days ago by Devon Ryan ♦ 82k
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80
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Interpreting ATAC-seq alignment results
atac-seq genomics written 7 days ago by hara • 0
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1
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130
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1
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Peak call? or Just convert to bedfile by bedtools bamtobed? to generate the accessibility matrix of single-end single cell ATAC-seq
atac-seq single cell written 5 weeks ago by soya • 0 • updated 19 days ago by Devon Ryan ♦ 82k
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1
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416
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6 follow
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Problem with the installation of Zinba(peak caller) on R
peak-calling atac-seq sequencing written 5 months ago by anais1396 • 20 • updated 4 weeks ago by Young • 0
16
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3
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195
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5 follow
3
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how can I transfer this different steps bedgraph format into 1bp file?
atac-seq linux written 5 weeks ago by 1106518271 • 30 • updated 5 weeks ago by cpad0112 • 8.3k
3
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1
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128
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1
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How to compare bigwig tracks of two ATAC libraries.
atac-seq written 5 weeks ago by a.rex • 150 • updated 5 weeks ago by ATpoint ♦ 6.5k
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1
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183
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1
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csaw - Htslib import errors and missing reads/chromosomes
csaw bam chip-seq atac-seq library written 6 weeks ago by reskejak • 10
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2
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211
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5 follow
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How can I look at find 'open chromatin' from ATAC-seq data using MACS2
macs2 atac-seq written 6 weeks ago by a.rex • 150 • updated 6 weeks ago by ATpoint ♦ 6.5k
3
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2
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171
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2
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How can I map reads only of a certain length?
atac-seq bwa sequencing written 6 weeks ago by a.rex • 150 • updated 6 weeks ago by Pierre Lindenbaum ♦ 111k
2
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2
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972
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5 follow
2
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ATAC-seq: differential peaks using macs2 bdgdiff yields strange results
macs2 atac-seq written 6 months ago by stephenz • 0 • updated 6 weeks ago by Alternative • 210
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1
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174
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1
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Library complexity downsampling validation and samtools flagstat (ATAC-seq)
atac-seq samtools complexity atacseqqc library written 7 weeks ago by reskejak • 10
3
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1
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143
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1
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Batch and combining reads from two flow cells for the same ChIP/ATAC-seq library
illumina combine atac-seq chip-seq batch written 8 weeks ago by reskejak • 10 • updated 8 weeks ago by Devon Ryan ♦ 82k
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2
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183
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2
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Picard MarkDuplicates flag vs remove issue
duplicates picard atac-seq markduplicates written 9 weeks ago by s1469060 • 10 • updated 9 weeks ago by prakash • 240
8
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3
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398
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8 follow
3
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ATAC-seq DE analysis
atac-seq differential expression written 9 weeks ago by collmerr • 10 • updated 9 weeks ago by trausch • 1.0k
4
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2
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297
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2
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ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 9 weeks ago by nanoide • 10 • updated 9 weeks ago by Ricardo D'O. Albanus • 70
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1
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353
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1
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ATAC-seq : strategies to have the list of the expressed genes
atac-seq sequencing written 3 months ago by anais1396 • 20
11
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2
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6.5k
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16 follow
2
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What are the best tools for differential detection between ATAC-seq samples?
next-gen atac-seq written 20 months ago by datascientist28 • 350 • updated 10 weeks ago by phosphodiester_bond • 0
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Differential Peak Expression in ATAC-seq data
peak calling atac-seq differential expression written 20 months ago by ccag • 30 • updated 10 weeks ago by phosphodiester_bond • 0
5
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1
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208
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1
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Diffbind for ATAC-seq data with no controls
diffbind atac-seq written 12 weeks ago by daniele.avancini • 10 • updated 12 weeks ago by Rory Stark • 460
4
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325
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5 follow
0
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ATAC-Seq High Unaligned Percentage
atac-seq written 4 months ago by isaac.rstefan • 0 • updated 3 months ago by Biostar ♦♦ 20
11
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1
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280
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1
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Expected correlation between ATAC data and Chip-Seq histone marks
chip-seq atac-seq written 3 months ago by bipin • 0 • updated 3 months ago by i.sudbery • 2.4k
25
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4
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13k
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4
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ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 23 months ago by igor ♦ 6.5k • updated 3 months ago by ZheFrench • 140
1
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1
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187
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1
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IDR on blacklisted region-filtered narrowPeak
idr chip-seq atac-seq written 3 months ago by endicytosis • 0
2
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2
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379
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2
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ATAC-seq : call peaks, reproducibility and differential analysis without replicates
atac-seq differential expression sequencing written 3 months ago by anais1396 • 20 • updated 3 months ago by i.sudbery • 2.4k
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1
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189
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1
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How to unique bwa mem reads?
unique reads bwa single cell atac-seq written 3 months ago by niu.shengyong • 30
0
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1
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252
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1
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Using MACS2 for peak calling
peak calling atac-seq sequencing written 3 months ago by anais1396 • 20 • updated 3 months ago by Hussain Ather • 880
0
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261
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ATAC-seq differential accesibility using edgeR FDR vs Pval discrepencies
diifferential accesibility atac-seq edger written 3 months ago by achits • 20
6
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1
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373
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5 follow
1
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Diffbind - Very high proportion of significant peaks
diffbind deseq2 atac-seq written 4 months ago by kautilya • 370
3
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2
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337
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2
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Split bam files from ATAC-seq PE data into nucleosome free and nucleosomal regions
bam atac-seq nfr written 3 months ago by anlo • 10 • updated 3 months ago by Friederike • 2.0k
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