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<prev • 139 results • page 1 of 5 • next >
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Finding differences in motif enrichment between ATAC peak samples?
homer atac-seq written 11 months ago by a.rex • 190 • updated 2 days ago by danvoronov • 10
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ATAC-seq macs2 peak splitting in sliding windows
atac-seq written 9 days ago by nancy • 0 • updated 2 days ago by danvoronov • 10
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Differentially accessible and known enhancer overlap
bedtools enhancer atac-seq written 29 days ago by p4alindromic • 10
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Tutorial: Using EnrichedHeatmap for visualization of NGS experiments
tutorial enrichedheatmap chip-seq atac-seq heatmap written 4 weeks ago by ATpoint ♦ 23k
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ATAC-seq : strategies to have the list of the expressed genes
atac-seq sequencing written 16 months ago by anais1396 • 20 • updated 5 weeks ago by bm116 • 0
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Number of Tn5 insertions in TCGA ATAC-Seq data
tcga atac-seq sequencing written 6 weeks ago by Mike • 1.3k • updated 6 weeks ago by ATpoint ♦ 23k
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How should analyze if a Transcription factor significant in one condition vs. another using centipede footprints?
tf binding footprints postpr atac-seq written 6 weeks ago by zhaolin20042008 • 0
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How can I find motifs under individual ATAC-peaks?
atac-seq written 11 months ago by a.rex • 190 • updated 6 weeks ago by gable_works • 20
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Assignment of distal regions to genes
atac-seq rna-seq tad written 7 weeks ago by ATpoint ♦ 23k • updated 7 weeks ago by geek_y ♦ 9.8k
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ATAC-Seq trimming reads to 36bp
atac-seq written 7 weeks ago by Bioinfo_2006 • 100
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Peak calling for multiple replicates with Genrich
atac-seq peak-caling genrich written 4 months ago by linelr • 0 • updated 7 weeks ago by Friederike ♦ 5.1k
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samtools markdup vs PICARD's MarkDuplicates when removing duplicated reads
samtools atac-seq markduplicates written 9 weeks ago by nanoide • 30 • updated 9 weeks ago by predeus • 1.2k
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csaw - Htslib import errors and missing reads/chromosomes
csaw bam chip-seq atac-seq library written 14 months ago by reskejak • 20 • updated 9 weeks ago by xuzhougeng • 0
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Insert Size Metrics of ATAC-Seq data
picard atac-seq written 11 weeks ago by Bioinfo_2006 • 100 • updated 11 weeks ago by igor ♦ 8.3k
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Spikes in Insertsize too high
atac-seq written 11 weeks ago by xpan • 0 • updated 11 weeks ago by ATpoint ♦ 23k
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ATAC-seq vs Bisulfite-sequencing
epigenomics atac-seq bisulfite-seq rna-seq written 3 months ago by rtrende • 10 • updated 3 months ago by Charles Warden ♦ 7.2k
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ATAC-seq library preparation, and the number of cells
atac-seq written 3 months ago by deepseany • 0 • updated 3 months ago by ATpoint ♦ 23k
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What's the best 3rd party software for doing analysis on 10X Genomics ATAC-seq data?
10x atac-seq written 4 months ago by BioinformaticsLad • 140 • updated 4 months ago by Devon Ryan ♦ 91k
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ATACseqQC factorFootprints function
footprint atac-seq atacseqqc written 4 months ago by nanoide • 30
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ATAC-seq fragment length distribution
atac-seq written 13 months ago by Grinch • 70
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Job: Bioinformatician / Data Manager Position Open - Mount Sinai, New York
chip-seq pipeline atac-seq rna-seq job written 5 months ago by jaroslav.bendl • 10
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ATAC-seq : which read length?
atac-seq sequencing written 6 months ago by guillaume.rbt • 620
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Insert size of ~20bp with ATAC-seq?
alignment atac-seq sequencing written 6 months ago by a.rex • 190 • updated 6 months ago by ATpoint ♦ 23k
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258
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Question about combining (technical?) replicates
merge atac-seq written 6 months ago by collmerr • 20 • updated 6 months ago by JC ♦ 8.4k
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Differences between motif enrichment analysis and footprinting in the context of DNAse-seq/ATAC-seq
atac-seq footprinting dnase-seq motifs written 6 months ago by nanoide • 30 • updated 6 months ago by geek_y ♦ 9.8k
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What sequences should I use for ATAC-Seq adapter trimming using trimmomatic 0.36?
trimmomatic trimming adapter atac-seq written 6 months ago by Gary • 450 • updated 6 months ago by h.mon ♦ 27k
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Iterative trimming using bowtie
bowtie2 iterative trimming alignment atac-seq written 8 months ago by ancient_learner • 610 • updated 6 months ago by Biostar ♦♦ 20
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Can F-seq appers the p-value for each peak in the output?
chip-seq atac-seq written 6 months ago by vw • 20
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What's the meaning of column "score" of output bed file from F-seq
chip-seq atac-seq peakcalling written 6 months ago by vw • 20
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Remove duplicate readnames from a bam file
duplicates bam atac-seq duplicate read names written 7 months ago by garnerim1988 • 0
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