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3
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79
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1
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Batch and combining reads from two flow cells for the same ChIP/ATAC-seq library
illumina combine atac-seq chip-seq batch written 4 days ago by reskejak • 0 • updated 4 days ago by Devon Ryan ♦ 81k
0
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2
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90
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2
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Picard MarkDuplicates flag vs remove issue
duplicates picard atac-seq markduplicates written 9 days ago by s1469060 • 10 • updated 9 days ago by prakash • 120
6
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3
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200
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7 follow
3
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ATAC-seq DE analysis
atac-seq differential expression written 11 days ago by collmerr • 10 • updated 11 days ago by trausch • 1.0k
4
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2
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182
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2
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ATAC-seq macs2 peak calling bampe mode extension shift
macs peaks chip-seq atac-seq written 14 days ago by josruirod • 10 • updated 14 days ago by Ricardo D'O. Albanus • 50
4
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1
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258
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1
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ATAC-seq : strategies to have the list of the expressed genes
atac-seq sequencing written 6 weeks ago by anais1396 • 10
11
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2
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5.5k
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16 follow
2
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What are the best tools for differential detection between ATAC-seq samples?
next-gen atac-seq written 19 months ago by datascientist28 • 330 • updated 17 days ago by phosphodiester_bond • 0
1
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1
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2.6k
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1
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Differential Peak Expression in ATAC-seq data
peak calling atac-seq differential expression written 18 months ago by ccag • 30 • updated 17 days ago by phosphodiester_bond • 0
5
votes
1
answer
113
views
1
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Diffbind for ATAC-seq data with no controls
diffbind atac-seq written 4 weeks ago by daniele.avancini • 10 • updated 4 weeks ago by Rory Stark • 460
4
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0
answers
259
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5 follow
0
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ATAC-Seq High Unaligned Percentage
atac-seq written 12 weeks ago by isaac.rstefan • 0 • updated 6 weeks ago by Biostar ♦♦ 20
11
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1
answer
210
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1
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Expected correlation between ATAC data and Chip-Seq histone marks
chip-seq atac-seq written 6 weeks ago by bipin • 0 • updated 6 weeks ago by i.sudbery • 2.3k
23
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4
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12k
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4
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ATAC-seq peak calling with MACS
macs peaks chip-seq atac-seq written 22 months ago by igor ♦ 6.2k • updated 7 weeks ago by ZheFrench • 130
1
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1
answer
139
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1
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IDR on blacklisted region-filtered narrowPeak
idr chip-seq atac-seq written 7 weeks ago by endicytosis • 0
2
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2
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231
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2
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ATAC-seq : call peaks, reproducibility and differential analysis without replicates
atac-seq differential expression sequencing written 7 weeks ago by anais1396 • 10 • updated 7 weeks ago by i.sudbery • 2.3k
0
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1
answer
130
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1
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How to unique bwa mem reads?
unique reads bwa single cell atac-seq written 8 weeks ago by niu.shengyong • 30
0
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1
answer
168
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1
answer
Using MACS2 for peak calling
peak calling atac-seq sequencing written 8 weeks ago by anais1396 • 10 • updated 8 weeks ago by Hussain Ather • 860
0
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0
answers
158
views
0
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ATAC-seq differential accesibility using edgeR FDR vs Pval discrepencies
diifferential accesibility atac-seq edger written 8 weeks ago by achits • 20
6
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1
answer
277
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5 follow
1
answer
Diffbind - Very high proportion of significant peaks
diffbind deseq2 atac-seq written 10 weeks ago by kautilya • 360
3
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2
answers
213
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2
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Split bam files from ATAC-seq PE data into nucleosome free and nucleosomal regions
bam atac-seq nfr written 8 weeks ago by anlo • 10 • updated 8 weeks ago by Friederike • 1.8k
0
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1
answer
355
views
1
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Will mitochondria DNA affect the sequencing in ATAC-seq?
atac-seq written 5 months ago by ghostforever.shi • 20 • updated 8 weeks ago by ATpoint • 4.4k
0
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0
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175
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0
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Super-enhacer identification with ATAC-Seq
rose atac-seq super-enhancer written 3 months ago by Venados • 0 • updated 9 weeks ago by Biostar ♦♦ 20
2
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2
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195
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5 follow
2
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ATACseqQC - Cut-site probability greater than 1?
atac-seq atacseqqc written 3 months ago by ldyer2006 • 20 • updated 10 weeks ago by haibol2017 • 0
3
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0
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351
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0
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Normalization and differential analysis in ATAC-seq data
peak calling atac-seq differential expression written 10 weeks ago by anais1396 • 10 • updated 10 weeks ago by Ram ♦ 15k
2
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1
answer
185
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1
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Summit Extension in ATAC-seq
atac-seq sequencing written 11 weeks ago by shankasal • 10 • updated 11 weeks ago by igor ♦ 6.2k
0
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0
answers
152
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0
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News: Epigenomics Workshop in Berlin (28th May-1st June 2018)
news chip-seq atac-seq rna-seq written 12 weeks ago by carlopecoraro2 • 710
1
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1
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672
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5 follow
1
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ATAC-seq: differential peaks using macs2 bdgdiff yields strange results
macs2 atac-seq written 4 months ago by stephenz • 0 • updated 3 months ago by firatuyulur • 190
37
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3
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3.9k
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3
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What is the reason for trimming reads to 30 bp for ATAC-seq aligning?
alignment atac-seq written 20 months ago by datascientist28 • 330 • updated 4 months ago by Kevin Blighe ♦ 21k
7
votes
1
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297
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1
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Problem with the installation of Zinba(peak caller) on R
peak-calling atac-seq sequencing written 4 months ago by anais1396 • 10 • updated 4 months ago by mmfansler • 160
0
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0
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366
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0
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Job: Combating autoimmune disease through genomics analysis - BRI bioinformatics
biostatistics chip-seq atac-seq rna-seq job written 4 months ago by jobs • 0 • updated 4 months ago by Chris Miller ♦ 19k
0
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0
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366
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0
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Transcription factors and closed/activated/repressed chromatin
chip-seq chromatin atac-seq written 6 months ago by salamandra • 130
0
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0
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388
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0
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Job: Bioinformatics Analyst II/III - Banchereau Lab @ The Jackson Laboratory, Farmington, CT, USA
chip-seq iso-seq atac-seq rna-seq job written 6 months ago by JAX-GM • 30 • updated 6 months ago by genomax ♦ 49k
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