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<prev • 151 results • page 1 of 6 • next >
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meaning of "Total subpeaks" in Homer's mergePeaks?
homer chip-seq atac-seq written 1 day ago by fr • 120
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Does Chromvar require bulk ATAC-seq?
chromvar scatac-seq atac-seq written 8 days ago by jmah • 10
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Chromvar for single cell ATAC seq
chromvar single-cell atac-seq atac-seq written 10 days ago by jmah • 10 • updated 10 days ago by AidanQuinn • 30
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Strange output from Homer findPeaks
atacseq homer atac-seq written 15 days ago by fr • 120
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Tutorial: Using EnrichedHeatmap for visualization of NGS experiments
tutorial enrichedheatmap chip-seq atac-seq heatmap written 3 months ago by ATpoint ♦ 26k
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ATAC-seq TSS profile plot interpretation
tss atac-seq v-plot written 18 days ago by nanoide • 30
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Heterogeneity from bulk ChIP-seq or ATAC-seq data
heterogeneity chip-seq atac-seq clustering written 5 weeks ago by msimmer92 • 210 • updated 5 weeks ago by jared.andrews07 • 4.2k
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DESeq2 design matrix
deseq2 de analysis atac-seq written 6 weeks ago by mickey_95 • 10 • updated 6 weeks ago by ATpoint ♦ 26k
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Deeptools error - Solving environment: failed with initial frozen solve
deeptools atac-seq python error written 6 weeks ago by dydy_cristina • 0 • updated 6 weeks ago by yztxwd • 240
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PeakNarrow ATAC-Seq analysis
atac-seq narrowpeak written 2.2 years ago by Spacebio • 180 • updated 8 weeks ago by ATpoint ♦ 26k
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Job: Postdoctoral opportunity in Computational Epigenomics at NIH, Baltimore
sequencing next-gen job rna-seq atac-seq written 8 weeks ago by mia86sung • 10
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Is it okay to use deeptools bamCompare (SES normalization) for comparisons across different ATAC-Seq datasets?
atac-seq written 9 weeks ago by zerotimer • 0
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Integrative analysis of omics studies using machine learning
chip-seq atac-seq rna-seq machine learning written 13 months ago by Firas • 0 • updated 10 weeks ago by Kevin Blighe ♦ 52k
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ATAC-seq peak calling
peak calling macs2 atac-seq written 10 weeks ago by mickey_95 • 10 • updated 10 weeks ago by ATpoint ♦ 26k
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Bowtie2 alignment help for ATAC-seq
bowtie2 alignment data analysis atac-seq written 11 weeks ago by mrs.whirly • 0 • updated 10 weeks ago by ATpoint ♦ 26k
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Finding differences in motif enrichment between ATAC peak samples?
homer atac-seq written 14 months ago by a.rex • 190 • updated 12 weeks ago by danvoronov • 10
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ATAC-seq macs2 peak splitting in sliding windows
atac-seq written 3 months ago by nancy • 0 • updated 12 weeks ago by danvoronov • 10
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Differentially accessible and known enhancer overlap
bedtools enhancer atac-seq written 3 months ago by p4alindromic • 10
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ATAC-seq : strategies to have the list of the expressed genes
atac-seq sequencing written 19 months ago by anais1396 • 20 • updated 4 months ago by bm116 • 0
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Number of Tn5 insertions in TCGA ATAC-Seq data
tcga atac-seq sequencing written 4 months ago by Mike • 1.4k • updated 4 months ago by ATpoint ♦ 26k
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How should analyze if a Transcription factor significant in one condition vs. another using centipede footprints?
tf binding footprints postpr atac-seq written 4 months ago by zhaolin20042008 • 0
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How can I find motifs under individual ATAC-peaks?
atac-seq written 14 months ago by a.rex • 190 • updated 4 months ago by gable_works • 20
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7 follow
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Assignment of distal regions to genes
atac-seq rna-seq tad written 4 months ago by ATpoint ♦ 26k • updated 4 months ago by geek_y ♦ 10k
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ATAC-Seq trimming reads to 36bp
atac-seq written 4 months ago by Bioinfo_2006 • 110
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Peak calling for multiple replicates with Genrich
atac-seq peak-caling genrich written 7 months ago by linelr • 0 • updated 4 months ago by Friederike ♦ 5.2k
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samtools markdup vs PICARD's MarkDuplicates when removing duplicated reads
samtools atac-seq markduplicates written 4 months ago by nanoide • 30 • updated 4 months ago by predeus • 1.3k
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csaw - Htslib import errors and missing reads/chromosomes
csaw bam chip-seq atac-seq library written 17 months ago by reskejak • 20 • updated 5 months ago by xuzhougeng • 0
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Insert Size Metrics of ATAC-Seq data
picard atac-seq written 5 months ago by Bioinfo_2006 • 110 • updated 5 months ago by igor ♦ 8.9k
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Spikes in Insertsize too high
atac-seq written 5 months ago by xpan • 0 • updated 5 months ago by ATpoint ♦ 26k
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ATAC-seq vs Bisulfite-sequencing
epigenomics atac-seq bisulfite-seq rna-seq written 6 months ago by rtrende • 10 • updated 6 months ago by Charles Warden ♦ 7.5k
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