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written 5.1 years ago by
huamiiforget • 10
• updated
4.8 years ago by
QVINTVS_FABIVS_MAXIMVS • 2.4k
Recent Votes
- C: Identifying novel mRNA transcripts
- Convert a Seurat object to .h5ad file
- A: Remove not polymorphic sites from VCF
- A: Filtering of VCF, INFO DP or FORMAT DP
- A: How to filter vcf file on minimum genotype depth and quality for each sample
- C: Microarray data from different sets but same platform
- A: Gene expression heatmap following pseudotime analysis
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Recent Replies
-
C: Enrichment Analysis, Clustering and Scoring with pathfindR by
Sumit Paliwal • 30
Hi, Thanks for the useful package and a wonderful tutorial. I have a small doubt. I assume that w...
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C: Identifying novel mRNA transcripts by
Pranathi_Limmala • 0
Yes, thankyou so much!
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C: How do I effectively automate BLAST searches without using a local database? by
Malcolm.Cook • 1.2k
it is possible to limit the subset of nr searched in a way relevant to the OPs application by [Li...
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C: How do I effectively automate BLAST searches without using a local database? by
Malcolm.Cook • 1.2k
I am unfamiliar with using the python wrapper to blast+ command line. Regardless... I question...
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C: KEGG enrichment pathway by
rpolicastro ♦ 3.9k
There doesn't appear to be KEGG or Reactome entries for wheat, but there is GO ontology data avai...
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C: How to filter vcf file on minimum genotype depth and quality for each sample by
shinken123 • 100
FMT is for Format, you can find more info here: https://www.biostars.org/p/350919/
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C: Gene expression heatmap following pseudotime analysis by
rpolicastro ♦ 3.9k
Yep, the code is essentially calculating a smoothed average, and then sorting the genes based on ...
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C: Gene expression heatmap following pseudotime analysis by
Vitis • 2.4k
It's a brilliant solution! So it basically smooths the expression across features, then sorts the...
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A: Error on Linear regression bulkRNAseq by
rpolicastro ♦ 3.9k
prova$sex <- factor(prova$treatment, levels=c("F","M")) should be prova$sex <- ...
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A: from phased SNPs to haplotype blocks (or phase sets) by
Peter Chung • 130
maybe HAPCUT2 ? ./build/HAPCUT2 --fragments fragment_file --VCF variants.vcf --output haplotype_...
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C: Annotating reads with the name of the feature to which they map by
lech.kaczmarczyk • 0
Thanks a lot for clarification @A. Dominguez!
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C: PCA plotting using DESEq2 pipeline by
GenoMax ♦ 96k
This comment belongs under @ATpoint's comment in answer below. Please don't use `SUBMIT ANSWER` ...
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