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written 4.6 years ago by
huamiiforget • 10
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4.4 years ago by
QVINTVS_FABIVS_MAXIMVS • 2.4k
Recent Votes
- C: How do I subset VCF based on genotype?
- [RNA-Seq] STAR vs Subread and TPM?
- C: Help interpreting BLAST results? (Max score/Percent. Identity/E-values)
- A: How do I subset VCF based on genotype?
- A: How do I subset VCF based on genotype?
- A: What is the best way to combine machine learning algorithms for feature selectio
- C: retrieving best hit in local blast output
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Recent Replies
-
C: Help interpreting BLAST results? (Max score/Percent. Identity/E-values) by
cia • 10
again,thank you very much!!
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C: How do I subset VCF based on genotype? by
Tine • 10
Thank you so much! What a nice and simple solution. I need to remember to check the bcftools docu...
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A: How to download primary site data from TCGA? by
Kevin Blighe ♦ 65k
It is possible to distinguish malignant / benign from the TCGA barcode ( https://www.biostars.org...
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C: DESeq2 analysis with high number of samples by
Kevin Blighe ♦ 65k
You are posting this question prematurely, it seems. Please proceed with your experiment and then...
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A: Does bedtools intersect output overlaps with isoforms? by
Kevin Blighe ♦ 65k
You can control what is output - can you please check the options for `bedtools intersect`, speci...
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C: VariantToTable not calling HET HOM etc by
Kevin Blighe ♦ 65k
Can you confirm that you have first posted this on GATK Support Forum? That would be the better p...
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A: Methods to interrogate RNA-seq by
Kevin Blighe ♦ 65k
Perhaps you can obtain some insight from my answer, here: https://www.biostars.org/p/305532/ Kevin
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C: how to interpret a CNV scatter plot by
Amitm • 2.0k
No worries. To understand better the outcome in pat.C, I would recommend to look into the 'segmen...
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A: How do I subset VCF based on genotype? by
Kevin Blighe ♦ 65k
Hi, There are indeed different ways to do this, including via standard shell commands. However,...
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C: Alignng RNAseq data for gene prediction by
Kevin Blighe ♦ 65k
Trinotate, part of the broader Trinity workflow, performs functional annotation: https://github.c...
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C: Clustered GO-term heatmap by
rpolicastro • 1.7k
To make the plot you linked to, you start with a data.frame that has 3 columns: gene, sample, and...
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C: Clustered GO-term heatmap by
ccha97 • 20
Thank you for your answer, their formula interface/compareCluster is exactly the sort of function...
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