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Analyzing clusters of genes

genes clusters autism written 7 weeks ago by naseerkhan861 • 0

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250

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Automated tool for downloading Autism data from GEO on Humans

geo autism programming written 9 months ago by naseerkhan861 • 0

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492

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Tutorial for neurogenomics or rare disease diagnosis

epilepsy counseling clinical autism written 2.4 years ago by gogonegro • 0

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881

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How to Analyze CNV with Autism

cnv autism written 3.8 years ago by huamiiforget • 10 • updated 3.6 years ago by QVINTVS_FABIVS_MAXIMVS • 2.3k

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Somatic mutation(indels) in blood sample(autism)

indel somatic blood mutation autism written 4.5 years ago by lee.jingu0626 • 30

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Recent Replies

C: grouping of maf results in GWAS by Nicolas Rosewick ♦ 8.5k
could you describe a little bit more your experiment design, the tools you used and put some of y...
C: Visualisation of SNPs in R by Colari19 • 40
Thank you, this is exactly the kind of thing I'm after.
A: What is the difference between multiple docking and ensemble docking? by Jean-Karim Heriche ♦ 21k
Ensemble docking refers to the approach of generating multiple structures of the target molecule ...
C: Visualisation of SNPs in R by cpad0112 ♦ 12k
see if this vignette makes sense to you: https://bioconductor.org/packages/release/bioc/vignette...
A: ERROR in sam to bam conversion by ATpoint ♦ 26k
It is not recommended to directly dump files, be it fastq or sam from NCBI. The connection is too...
C: How do I compute ld blocks from the hapmap ld_data? by Kevin Blighe ♦ 52k
Then, first, you have to identify the LD blocks, which are calculated at the SNP level and not th...
C: Remove part of the header from multi-fasta file (another one) by cpad0112 ♦ 12k
with [seqkit][1]: $ seqkit replace -p "[-_].*" -r "" input.fa check if it makes sense to re...
A: Testing similarity between functional genomic annotations by Jean-Karim Heriche ♦ 21k
There are plenty of similarity measures for binary vectors. Check for example the [R package prox...
C: Differential expression tool that can take TPM as input? by ATpoint ♦ 26k
None of it is ideal. You should start from raw counts if possible. If not and TPM is the only thi...
C: How do I compute ld blocks from the hapmap ld_data? by endrebak • 800
I thank you for your reply. I should have been more explicit; I wanted bed files with the ld-bloc...
A: What is the difference between Intracellular Signaling Network and Gene Regulato by Jean-Karim Heriche ♦ 21k
Intracellular signalling networks are composed of pathways that process signals both from outside...
C: logFC in topTable problem- almost identical to average expression by Kevin Blighe ♦ 52k
I just noticed this thread on Bioconductor, too: https://support.bioconductor.org/p/126919/

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