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how to change bam file chromosome names using sed or awk?
bam awk written 5 days ago by qianxu05170 • updated 5 days ago by swbarnes28.1k
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3
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5 follow
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Split a FastQ file into smaller files
famas fastq bbmap awk written 9 days ago by Matthias Zepper70 • updated 7 days ago by genomax87k
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How to add column to table with awk
bed-files awk unix shell bash written 12 days ago by linelr10 • updated 12 days ago by Shalu Jhanwar350
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135
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awk column number is a variable
awk rna-seq bash written 13 days ago by DBScan20 • updated 12 days ago by user_without_id140
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Extract all seqs bewteen two seqs ID in Fastq
fastq sed awk written 18 days ago by erwan.scaon790 • updated 18 days ago by Pierre Lindenbaum129k
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MSA ID replacement with a list ID
python bash awk written 2.8 years ago by lessismore880 • updated 4 weeks ago by Biostar ♦♦ 20
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Change the field separator
R field separator awk written 5 weeks ago by DataFanatic240 • updated 5 weeks ago by Jeffin Rockey1.1k
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117
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renaming fasta file with part of fasta header
sed awk written 6 weeks ago by KG10 • updated 6 weeks ago by genomax87k
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141
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How to filter a VCF file with a list of CHR or contig IDs?
vcf chromosome contigs vcftools awk written 7 weeks ago by lexic271310 • updated 7 weeks ago by drkennetz500
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6 follow
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Grep VCF position awk
vcf grep awk written 7 weeks ago by the_cowa40 • updated 7 weeks ago by ATpoint36k
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146
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unix, awk or sed question on splitting lines
sed unix awk written 7 weeks ago by geneart$$20 • updated 7 weeks ago by genomax87k
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8 follow
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How do I match two files using one column as reference?
command line awk written 8 weeks ago by eennadi0 • updated 8 weeks ago by Yean120
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Bed file grepping from the list
bed grep awk written 8 weeks ago by the_cowa40 • updated 8 weeks ago by Pierre Lindenbaum129k
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125
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per sample mean coverage and standard deviation
bash awk written 11 weeks ago by ijlal.hyder201210 • updated 11 weeks ago by husensofteng260
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131
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removing rows if X percentages of columns / fields are empty
next-gen sed snp awk written 12 weeks ago by waqasnayab200 • updated 11 weeks ago by cpad011213k
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169
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0
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176
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Edit a Multifasta File Through awk
fasta unix awk written 12 weeks ago by pthom0100
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106
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Controlling expressions with Awk
gawk bash terminal awk written 12 weeks ago by aaa.bioinfo0 • updated 12 weeks ago by genomax87k
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awk gsub question
forum text editing awk written 3 months ago by sor.draga0 • updated 3 months ago by ATpoint36k
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117
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combine fasta sequences in combination from two different files
fasta unix shell awk written 5 months ago by shome0 • updated 5 months ago by Pierre Lindenbaum129k
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