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<prev • 203 results • page 1 of 7 • next >
4
votes
2
answers
182
views
2
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If a string appears twice in column 1, select the higher value in column 2
awk bash written 9 weeks ago by drkennetz • 340 • updated 1 day ago by zx8754 ♦ 4.9k
1
vote
0
answers
73
views
0
answers
Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 8 days ago by m93 • 90
3
votes
1
answer
163
views
1
answer
Adding optional tags to a BAM file
single-cell bam sam rna-seq awk written 10 days ago by sc243 • 0
6
votes
3
answers
184
views
3
answers
How to extract certain tag value by key from sam/bam file?
awk linux samtools sam bash written 19 days ago by yech1990 • 20 • updated 18 days ago by Pierre Lindenbaum ♦ 112k
7
votes
0
answers
248
views
5 follow
0
answers
Forum: Awk in Bioinformatics
perl forum pbs shell awk written 25 days ago by Shicheng Guo • 6.5k
8
votes
2
answers
150
views
2
answers
Struggle with awk command
awk written 29 days ago by Bastien Hervé • 1.8k • updated 29 days ago by dariober ♦ 9.4k
3
votes
1
answer
614
views
1
answer
finding overlapping genes
overlap awk written 22 months ago by Afagh • 70 • updated 6 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
229
views
1
answer
bedtools intersect with "bedgraph" style with multiple extra columns of data for multiple samples?
bedtools intersect awk written 6 weeks ago by dansapozhnikov • 10 • updated 6 weeks ago by Alex Reynolds ♦ 25k
2
votes
1
answer
159
views
1
answer
Is there a code to find consensus motif
python C shell awk written 6 weeks ago by vinayjrao • 100 • updated 6 weeks ago by Carlo Yague • 4.2k
0
votes
1
answer
105
views
1
answer
comparing two files and adding columns of one file to another file if a fields in a specific column match in both files
compare files awk linux written 7 weeks ago by ehsanullah83 • 0 • updated 6 weeks ago by michael.ante • 2.6k
35
votes
4
answers
19k
views
23 follow
4
answers
How To Filter Multi Fasta By Length??
awk written 5.1 years ago by HG • 1.1k • updated 7 weeks ago by Ram ♦ 17k
1
vote
1
answer
151
views
1
answer
Bedtools Slop for Specific Features
bedtools bedtool awk written 8 weeks ago by gtasource • 20 • updated 8 weeks ago by Jeffin Rockey • 690
12
votes
3
answers
851
views
5 follow
3
answers
Extract rows present in file1 and not in file 2
gene awk bash written 19 months ago by biostarsb • 20 • updated 9 weeks ago by zx8754 ♦ 4.9k
4
votes
2
answers
200
views
2
answers
Split ordered fasta file by alphabetical group using awk
fasta one-liner awk written 10 weeks ago by Josh Herr ♦ 5.6k • updated 10 weeks ago by cpad0112 • 8.8k
3
votes
0
answers
144
views
0
answers
compare two columns in text files
cat awk written 10 weeks ago by Sam • 70
10
votes
4
answers
273
views
7 follow
4
answers
add header with awk
awk written 10 weeks ago by Sam • 70 • updated 10 weeks ago by toralmanvar • 530
34
votes
4
answers
322
views
14 follow
4
answers
awk specific line from another file
formatting awk written 12 weeks ago by Hughie • 10
3
votes
2
answers
253
views
2
answers
text file editing
awk bash written 11 weeks ago by Sam • 70 • updated 11 weeks ago by Pierre Lindenbaum ♦ 112k
12
votes
4
answers
222
views
8 follow
4
answers
script for task or AWK
script awk written 3 months ago by rob234king • 560 • updated 3 months ago by dariober ♦ 9.4k
5
votes
4
answers
299
views
8 follow
4
answers
Extract fasta sequences from a file using a list in another file.
fasta grep header extract awk written 3 months ago by EBP91 • 0 • updated 3 months ago by cpad0112 • 8.8k
6
votes
4
answers
238
views
5 follow
4
answers
Join multiple sequence lines in to one.
alignment sequence sed awk written 3 months ago by MB • 0 • updated 3 months ago by cpad0112 • 8.8k
20
votes
6
answers
436
views
11 follow
6
answers
changing the name of files
bash awk written 4 months ago by Sam • 70 • updated 4 months ago by shenwei356 ♦ 4.1k
4
votes
4
answers
226
views
5 follow
4
answers
Redundant gene list simplification
R awk written 4 months ago by lessismore • 490 • updated 4 months ago by EagleEye ♦ 5.6k
3
votes
0
answers
320
views
0
answers
using awk to extract a specific pattern
gff awk extract parsing written 5 months ago by Toto26 • 10
3
votes
1
answer
232
views
1
answer
arranging columns and rows
grep awk bash written 5 months ago by Ambika • 20 • updated 5 months ago by Pierre Lindenbaum ♦ 112k
13
votes
3
answers
402
views
5 follow
3
answers
Use awk or other command to divide each column in a data file by it's first number
awk written 5 months ago by twesteele • 30 • updated 5 months ago by zx8754 ♦ 4.9k
1
vote
1
answer
260
views
1
answer
merge table with gene ID and names
R bash awk written 5 months ago by lessismore • 490
4
votes
2
answers
254
views
2
answers
reformat a gene association file
R bash awk written 6 months ago by lessismore • 490 • updated 6 months ago by h.mon ♦ 19k
7
votes
2
answers
289
views
7 follow
2
answers
How to extract genes 10000 bp upstream and 1000 bp downstream of long non coding RNA?
bedtools bedops awk sed bash written 6 months ago by bhuwankhatri11 • 20 • updated 6 months ago by Alex Reynolds ♦ 25k
2
votes
1
answer
288
views
1
answer
how to extract/grep lines containing specific word?
grep sed awk written 6 months ago by arsilan324 • 60 • updated 6 months ago by Kevin Blighe ♦ 28k
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