Showing: awkreset
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Quick One Liner For Fastq Header Renaming
fastq awk written 6.5 years ago by Josh Herr5.7k • updated 11 days ago by ATpoint23k
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7 follow
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12
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7 follow
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extract lines with multiple conditions on multiple fields/column
grep sed awk written 23 days ago by Sam10 • updated 22 days ago by arup1.7k
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189
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5 follow
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Modifying fasta header
perl python sed unix awk written 5.1 years ago by empyrean999160 • updated 26 days ago by RamRS24k
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168
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6 follow
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1
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153
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How to remove all characters after a specific pattern?
linux sed rna-seq awk written 5 weeks ago by star190 • updated 5 weeks ago by Jeffin Rockey1.1k
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6.9k
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2
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How To Extract Reads With Wrong Insert Size With Samtools
bam samtools awk written 6.8 years ago by Assa Yeroslaviz1.2k • updated 5 weeks ago by Biostar ♦♦ 20
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3
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How To Extract Gene Names From An Unstructured Text File?
awk written 6.4 years ago by bioinfo740 • updated 9 weeks ago by tomluec60
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191
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new file with line in common
bash awk written 10 weeks ago by amandinelecerfdefer20
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228
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7 follow
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Remove double vertical bar "||" at the end of the sequence in a fasta file
fasta sed awk written 11 weeks ago by Ambika30 • updated 11 weeks ago by SMK1.8k
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152
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Bioawk - using bash variables
software error awk written 12 weeks ago by spiral01100 • updated 12 weeks ago by SMK1.8k
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122
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1
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modify a file by deleting what is not contained in a second file
awk written 12 weeks ago by amandinelecerfdefer20 • updated 12 weeks ago by SMK1.8k
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174
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1
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2
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733
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Extract gene lists using two files
shell script unix awk written 23 months ago by bk1130 • updated 3 months ago by Biostar ♦♦ 20
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5
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190
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Using awk or sed to edit a column in a gtf file
awk sed gft linux written 3 months ago by imda10 • updated 3 months ago by geek_y9.8k
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127
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6 follow
2
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Extract and retain only chromosome info in GWAS sumstats file
bash sed gwas sumstats munging awk written 3 months ago by camerond100 • updated 3 months ago by shawn.w.foley1.0k
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1
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136
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1
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awk to organize bed file
bed awk written 4 months ago by flogin150 • updated 4 months ago by finswimmer12k
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3
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249
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7 follow
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compare two columns of two files
awk bash written 4 months ago by Sam120 • updated 4 months ago by brett.vanderwerff130
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194
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0
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0
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1
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6 follow
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How to count the length of fasta sequences?
fasta python shell scripting grep awk written 5 months ago by Dineshkumar K10 • updated 5 months ago by fhsantanna440
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191
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Modify BED with poliregions
bed bash awk written 6 months ago by v82masae140 • updated 6 months ago by Pierre Lindenbaum122k
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229
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1
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Extract in specific column with patter file
grep awk written 6 months ago by flogin150 • updated 6 months ago by Kevin Blighe48k
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1
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248
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1
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Splitting string in a column using character
regex sed snp awk written 6 months ago by sofie_carolina20 • updated 6 months ago by zx87548.2k
5
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271
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2
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How to rename duplicate fasta headers after the first underscore '_'?
fasta duplicate header sed awk written 6 months ago by MB20 • updated 6 months ago by Carambakaracho1.6k
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4
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523
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10 follow
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Remove duplicates in an extremely large text file
uniq plink snp awk written 7 months ago by OAJn863450 • updated 7 months ago by Santosh Anand4.9k
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