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105
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`chromosome_strand` all change to `1`
icgc awk written 11 days ago by wangshx • 0
2
votes
1
answer
139
views
1
answer
divide vcf file by consequence
vcf awk written 25 days ago by Medhat • 6.7k • updated 25 days ago by Pierre Lindenbaum ♦ 96k
6
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3
answers
161
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5 follow
3
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Pattren counter in fasta file
perl fasta regular expression counter awk written 7 weeks ago by adityagt15 • 0 • updated 7 weeks ago by cpad0112 • 1.1k
4
votes
3
answers
131
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3
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Retrieve header of column (field) in which data is above or equals a number
commandline awk written 9 weeks ago by salamandra • 70 • updated 9 weeks ago by Pierre Lindenbaum ♦ 96k
1
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0
answers
193
views
0
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Difference in alignment summary from bam/sam and bed
alignment rna-seq awk written 10 weeks ago by viv3kanand • 10
5
votes
3
answers
895
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3
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[SOLVED] manipulating text in linux enviroment
pipeline sed file manipulation awk written 3.2 years ago by theodore • 20 • updated 3 months ago by Biostar ♦♦ 20
3
votes
2
answers
237
views
2
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search for low coverage regions on bam file
bedtools genomecov coverage awk written 3 months ago by mary • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 96k
3
votes
2
answers
309
views
5 follow
2
answers
Find Matched records in Multiple Files based on first column
awk written 8 months ago by khanirfanbioinformatics • 0 • updated 3 months ago by shenwei356 • 3.1k
7
votes
1
answer
189
views
1
answer
awk code question
awk written 3 months ago by rbronste • 120 • updated 3 months ago by Pierre Lindenbaum ♦ 96k
3
votes
1
answer
241
views
1
answer
Question: Mean and SD read length from a range of fastq files
fastq awk sed sequencing written 4 months ago by eoin • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 96k
6
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2
answers
223
views
2
answers
Parsing gff files using python and awk
awk written 4 months ago by Afagh • 20 • updated 4 months ago by WouterDeCoster ♦ 20k
0
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1
answer
113
views
1
answer
How to prepare a table of last exons
R rna-seq awk written 4 months ago by lauren.fehrman • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 96k
9
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3
answers
230
views
3
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[solved] Read a file once and get next lines that match a list of pattern with awk ?
reads barcode grep sed awk written 4 months ago by Franck8413 • 10
1
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2
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250
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2
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how to keep common reads in paired end reads if the number of reads are not same in read1.fq and read2.fq
perl bowtie2 sed rna-seq awk written 4 months ago by ak93sharma • 10 • updated 4 months ago by shenwei356 • 3.1k
3
votes
2
answers
227
views
2
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Extracting pairwise alignment info
pairwise alignement grep sed unix awk written 5 months ago by Kevin D • 0 • updated 5 months ago by 5heikki ♦ 6.5k
11
votes
6
answers
5.3k
views
11 follow
6
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Remove Redundant Sequences Fasta
perl fasta sequence unix awk written 3.7 years ago by empyrean999 • 140 • updated 5 months ago by Eslam Samir • 90
10
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4
answers
2.5k
views
4
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Extract specific reads from FASTQ files based on subsequence
fastq awk bash written 2.2 years ago by Paul • 620 • updated 5 months ago by springpython • 0
0
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1
answer
326
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1
answer
Renaming and editing a bed file
bed chip-seq sed awk written 6 months ago by Debbie • 10 • updated 6 months ago by Alex Reynolds ♦ 19k
2
votes
1
answer
348
views
1
answer
Matching fasta headers in a file and removing the entries that do not have a corresponding match
fasta perl sed text processing awk written 6 months ago by shreyasibiswas88 • 30 • updated 6 months ago by Pierre Lindenbaum ♦ 96k
0
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1
answer
281
views
1
answer
awk format question
bed format awk written 7 months ago by newbiebio • 60 • updated 7 months ago by genomax ♦ 30k
3
votes
1
answer
314
views
1
answer
finding overlapping genes
overlap awk written 7 months ago by Afagh • 20 • updated 7 months ago by Alex Reynolds ♦ 19k
11
votes
5
answers
539
views
5
answers
FASTA sequence sorting based on the header
perl fasta sequence awk written 8 months ago by akhilvbioinfo • 100 • updated 8 months ago by michael.ante • 1.6k
2
votes
1
answer
301
views
1
answer
script for collecting selected IDs prediction result from Transdecoder .pep file
python bash script sequence awk written 8 months ago by Farbod • 3.0k
9
votes
4
answers
385
views
4
answers
Awk or Shell script in need
shell awk written 8 months ago by ThulasiS • 0 • updated 8 months ago by khalid.belkhir • 20
3
votes
1
answer
465
views
1
answer
Finding intergenic regions in bed file?
awk written 8 months ago by pavep • 0 • updated 8 months ago by novice • 670
4
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2
answers
284
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2
answers
Determining length of numerical ranges in file by perl/awk
perl awk written 8 months ago by User 6777 • 10 • updated 8 months ago by Jorge Amigo ♦ 9.7k
1
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0
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467
views
0
answers
Awk- How to compare 2 files with common columns and then get the output file with columns from each file.
awk written 9 months ago by bright.g.january1732 • 0
1
vote
0
answers
379
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0
answers
An error when using ENCODE-Phantompeakqualtools
nsc R awk chip-seq rsc written 9 months ago by Z-F • 10
3
votes
3
answers
404
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3
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awk to clip off telomeres
telomere fasta osx terminal awk written 10 months ago by rm16 • 0 • updated 10 months ago by Farbod • 3.0k
0
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0
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267
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0
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Collapse and average the microarray data
average microarray awk written 10 months ago by grayapply2009 • 150
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