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<prev • 224 results • page 1 of 8 • next >
17
votes
4
answers
251
views
10 follow
4
answers
Remove duplicates in an extremely large text file
uniq plink snp awk written 16 days ago by OAJn8634 • 50 • updated 15 days ago by Santosh Anand ♦ 4.6k
2
votes
0
answers
136
views
5 follow
0
answers
How to get a FASTA file where you filter by length to exclude sortest and longest 10%
fasta alignment sequence linux awk written 20 days ago by namarino • 0 • updated 20 days ago by RamRS ♦ 20k
10
votes
1
answer
137
views
5 follow
1
answer
How to write a code in Linux to manipulate a large file with grep/awk
R linux rs chr awk written 23 days ago by OAJn8634 • 50 • updated 23 days ago by Alex Reynolds ♦ 27k
0
votes
0
answers
151
views
5 follow
0
answers
multiple DNA file Sliced to a fixed length substring by index/location
python bash awk written 7 weeks ago by jamesdong • 0
3
votes
1
answer
156
views
1
answer
Awk, Sed, Grep to create a sequential numerical text replacement in my gtf file
grep sed awk written 7 weeks ago by sdbaney • 0 • updated 7 weeks ago by RamRS ♦ 20k
1
vote
1
answer
146
views
1
answer
Add double qoutes around transcript_id in gtf file
gtf stringtie rna-seq awk written 8 weeks ago by BioBaby • 0 • updated 8 weeks ago by finswimmer ♦ 10k
3
votes
2
answers
408
views
5 follow
2
answers
Count the number of homozygous and heterozygous variants in VCF file
1000genomes allele awk count written 12 weeks ago by aadhirareddy1323 • 20
3
votes
0
answers
219
views
0
answers
Extract Hard-clipped and soft-clipped values from fifth column
perl sequencing awk bash written 10 weeks ago by Ram • 130 • updated 10 weeks ago by Pierre Lindenbaum ♦ 117k
5
votes
1
answer
248
views
1
answer
How to separate a strain of MTB drug wise?
python grep sed loop awk written 4 months ago by S AR • 50
2
votes
1
answer
209
views
1
answer
is there a way to get SRA info (Paired Library, Sample id, Seq Tech... etc) using a list of SRA IDS?
sra awk written 3 months ago by S AR • 50
11
votes
4
answers
276
views
4
answers
Extract a word from inside the text
R awk regex written 3 months ago by mostafarafiepour • 60 • updated 3 months ago by cpad0112 ♦ 11k
5
votes
1
answer
349
views
1
answer
awk and sed in bash script and no output
bash sed awk written 3 months ago by bk11 • 30 • updated 3 months ago by Alex Reynolds ♦ 27k
5
votes
2
answers
378
views
2
answers
SRA files bulk downloads
wget awk aspera recursive linux written 3 months ago by S AR • 50
10
votes
2
answers
346
views
2
answers
Filter VCF with bash commands
vcf grep awk bash written 3 months ago by ajuiwl • 30 • updated 3 months ago by dariober ♦ 9.9k
1
vote
0
answers
234
views
0
answers
Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 5 months ago by m93 • 140 • updated 3 months ago by Biostar ♦♦ 20
3
votes
1
answer
200
views
1
answer
Separate fasta file for each locus
fasta radseq awk written 3 months ago by NM • 0
19
votes
0
answers
755
views
13 follow
0
answers
Forum: Awk in Bioinformatics
perl forum shell awk written 6 months ago by Shicheng Guo • 7.4k
10
votes
3
answers
282
views
3
answers
compare two file to retrieve common lines
bash awk written 3 months ago by Sam • 100
0
votes
1
answer
308
views
1
answer
Help in Python and AWK: Printing absolute difference value between consecutive rows values, if column1 value is same
python awk written 4 months ago by tinkuhim007 • 0 • updated 4 months ago by Kevin Blighe ♦ 37k
12
votes
1
answer
285
views
1
answer
Add text in somewhere middle of line using information from the same line in file.
sed unix awk written 4 months ago by bk11 • 30 • updated 4 months ago by jrj.healey ♦ 10k
0
votes
2
answers
157
views
2
answers
Add string to a column of a file and retain the rest
linux awk written 4 months ago by Inquisitive8995 • 40
7
votes
1
answer
288
views
6 follow
1
answer
Merge two SNP vcf files
vcf snp awk written 4 months ago by fufuyou • 100 • updated 4 months ago by zx8754 ♦ 6.6k
10
votes
2
answers
326
views
2
answers
Compare two genotype data frame and calculate percentage of differences
R linux awk written 4 months ago by dorarinyo88 • 20 • updated 4 months ago by Pierre Lindenbaum ♦ 117k
8
votes
1
answer
2.3k
views
1
answer
Question: Mean and SD read length from a range of fastq files
fastq awk sed sequencing written 23 months ago by eoin • 30 • updated 4 months ago by savscosta • 0
4
votes
2
answers
272
views
2
answers
If a string appears twice in column 1, select the higher value in column 2
awk bash written 7 months ago by drkennetz • 360 • updated 5 months ago by zx8754 ♦ 6.6k
3
votes
1
answer
369
views
1
answer
Adding optional tags to a BAM file
single-cell bam sam rna-seq awk written 5 months ago by sc243 • 10
6
votes
3
answers
629
views
3
answers
How to extract certain tag value by key from sam/bam file?
awk linux samtools sam bash written 5 months ago by yech1990 • 20 • updated 5 months ago by Pierre Lindenbaum ♦ 117k
8
votes
2
answers
282
views
2
answers
Struggle with awk command
awk written 6 months ago by Bastien Hervé ♦ 3.3k • updated 6 months ago by dariober ♦ 9.9k
3
votes
1
answer
713
views
1
answer
finding overlapping genes
overlap awk written 2.2 years ago by Afagh • 70 • updated 6 months ago by Biostar ♦♦ 20
2
votes
1
answer
428
views
1
answer
bedtools intersect with "bedgraph" style with multiple extra columns of data for multiple samples?
bedtools intersect awk written 6 months ago by dansapozhnikov • 10 • updated 6 months ago by Alex Reynolds ♦ 27k
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