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<prev • 258 results • page 1 of 9 • next >
0
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1
answer
60
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1
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Using xargs to tabix each line of a bed to a vcf
vcf tabix xargs awk written 7 days ago by jvijai • 1.1k • updated 7 days ago by ATpoint ♦ 26k
0
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0
answers
57
views
0
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How to get unique counts saved in a file
linux awk unique counts sort written 8 days ago by kittys • 0 • updated 8 days ago by genomax ♦ 75k
4
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2
answers
99
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5 follow
2
answers
awk gff column change
gff awk written 4 weeks ago by rob234king • 580 • updated 4 weeks ago by yztxwd • 240
2
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0
answers
104
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0
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Help with awk command
print awk written 5 weeks ago by someler • 0 • updated 5 weeks ago by genomax ♦ 75k
1
vote
1
answer
210
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1
answer
Comparing two columns of one file with two columns of another file, print all the matching in one file and mismatching in another file. Python or Bash ?
python matching join awk written 7 weeks ago by Thanujay S • 0 • updated 7 weeks ago by massa.kassa.sc3na • 170
2
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1
answer
167
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1
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How do you extract longest transcript from fasta file using length and header IDs?
fasta awk written 8 weeks ago by DNAngel • 40 • updated 8 weeks ago by JC ♦ 9.1k
9
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2
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355
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6 follow
2
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Comparing values of a column if it falls between values of two columns of a different data set and creating new column
R awk linux written 8 weeks ago by eDNAuRNA • 20 • updated 8 weeks ago by zx8754 ♦ 8.8k
33
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5
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18k
views
28 follow
5
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Filtering Fastq Sequences Based On Lengths
perl unix awk written 6.7 years ago by empyrean999 • 160 • updated 8 weeks ago by komjinhubuio • 10
2
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1
answer
150
views
1
answer
Extract some interest sequences with a new name
tutorial awk written 9 weeks ago by Sillpositive • 10 • updated 9 weeks ago by JC ♦ 9.1k
9
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1
answer
162
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1
answer
Limiting interval sizes with awk
bedtools bed bedops awk interval written 10 weeks ago by rbronste • 300
12
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3
answers
168
views
3
answers
Help with awk loop
awk written 10 weeks ago by Francisco Muñoz • 10
5
votes
1
answer
152
views
1
answer
How to print lines of two file where column 2 and 3 of File 1 fall in between column 2 and 3 of file 2
python awk bash written 3 months ago by akinyemiibukun • 20 • updated 3 months ago by Pierre Lindenbaum ♦ 124k
3
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1
answer
155
views
1
answer
How to generate a combined read count txt file with header as file name
R bash awk linux written 3 months ago by Bioinfonext • 180
31
votes
5
answers
12k
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8 follow
5
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Quick One Liner For Fastq Header Renaming
fastq awk written 6.7 years ago by Josh Herr ♦ 5.7k • updated 3 months ago by ATpoint ♦ 26k
3
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2
answers
225
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7 follow
2
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How to find those files name which contains specific symbol i.e. underscore sign in column2?
find R grep awk written 3 months ago by sidrarafi89 • 10 • updated 3 months ago by bruce.moran • 660
12
votes
1
answer
230
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7 follow
1
answer
extract lines with multiple conditions on multiple fields/column
grep sed awk written 3 months ago by Sam • 10 • updated 3 months ago by arup • 1.9k
1
vote
1
answer
279
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5 follow
1
answer
How to filter GTF file and only print lines where the tag is a certain value?
gtf awk written 3 months ago by Tails • 30
3
votes
1
answer
2.1k
views
1
answer
Modifying fasta header
perl python sed unix awk written 5.4 years ago by empyrean999 • 160 • updated 3 months ago by RamRS ♦ 25k
4
votes
3
answers
238
views
6 follow
3
answers
Convert a two-column file to a single file with interlayed rows
fasta bash sequence awk paste written 4 months ago by JGuVa • 10
1
vote
2
answers
206
views
2
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How to remove all characters after a specific pattern?
linux sed rna-seq awk written 4 months ago by star • 190 • updated 4 months ago by Jeffin Rockey • 1.1k
3
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2
answers
7.2k
views
2
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How To Extract Reads With Wrong Insert Size With Samtools
bam samtools awk written 7.1 years ago by Assa Yeroslaviz • 1.2k • updated 4 months ago by Biostar ♦♦ 20
5
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3
answers
2.8k
views
3
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How To Extract Gene Names From An Unstructured Text File?
awk written 6.6 years ago by bioinfo • 740 • updated 4 months ago by tomluec • 60
8
votes
2
answers
236
views
7 follow
2
answers
new file with line in common
bash awk written 5 months ago by amandinelecerfdefer • 20
21
votes
4
answers
289
views
7 follow
4
answers
Remove double vertical bar "||" at the end of the sequence in a fasta file
fasta sed awk written 5 months ago by Ambika • 30 • updated 5 months ago by SMK • 1.9k
1
vote
1
answer
224
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1
answer
Bioawk - using bash variables
software error awk written 5 months ago by spiral01 • 100 • updated 5 months ago by SMK • 1.9k
3
votes
1
answer
162
views
1
answer
modify a file by deleting what is not contained in a second file
awk written 5 months ago by amandinelecerfdefer • 20 • updated 5 months ago by SMK • 1.9k
4
votes
1
answer
216
views
1
answer
How to subset a set of variations from a VCF on specific chromosome and between 2 postions?
vcf subset awk bash written 6 months ago by Defne • 0
2
votes
2
answers
773
views
2
answers
Extract gene lists using two files
shell script unix awk written 2.2 years ago by bk11 • 40 • updated 6 months ago by Biostar ♦♦ 20
0
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2
answers
200
views
2
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replace content of a column by the content of a variable
grep bash awk written 6 months ago by amandinelecerfdefer • 20
5
votes
1
answer
242
views
1
answer
print non match to list lines of GTF file
grep bash awk written 6 months ago by Sam • 140
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