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<prev • 182 results • page 1 of 7 • next >
2
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157
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using awk to extract a specific pattern
gff awk extract parsing written 2 days ago by Toto26 • 0
3
votes
1
answer
88
views
1
answer
arranging columns and rows
grep awk bash written 6 days ago by Ambika • 20 • updated 6 days ago by Pierre Lindenbaum ♦ 106k
13
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3
answers
175
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5 follow
3
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Use awk or other command to divide each column in a data file by it's first number
awk written 18 days ago by twesteele • 30 • updated 17 days ago by zx8754 ♦ 3.9k
1
vote
1
answer
107
views
1
answer
merge table with gene ID and names
R bash awk written 27 days ago by lessismore • 470
4
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2
answers
161
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2
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reformat a gene association file
R bash awk written 5 weeks ago by lessismore • 470 • updated 4 weeks ago by h.mon ♦ 13k
7
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2
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143
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7 follow
2
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How to extract genes 10000 bp upstream and 1000 bp downstream of long non coding RNA?
bedtools bedops awk sed bash written 5 weeks ago by bhuwankhatri11 • 20 • updated 5 weeks ago by Alex Reynolds ♦ 23k
1
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1
answer
155
views
1
answer
how to extract/grep lines containing specific word?
grep sed awk written 5 weeks ago by arsilan324 • 40 • updated 5 weeks ago by Kevin Blighe ♦ 17k
7
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3
answers
207
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7 follow
3
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grep a column based on a string
grep awk written 7 weeks ago by vinayjrao • 100 • updated 7 weeks ago by shenwei356 • 3.5k
0
votes
1
answer
150
views
1
answer
updating a cell in a file
sed shell awk written 7 weeks ago by vinayjrao • 100 • updated 7 weeks ago by danilo.tatoni • 30
2
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0
answers
171
views
0
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Sorting file by column, with missing values
sort glimmer awk written 9 weeks ago by oars • 80
7
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3
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207
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5 follow
3
answers
How do I add ">" symbol to FASTA headers?
fasta sed awk written 10 weeks ago by Alec Watanabe • 30 • updated 10 weeks ago by genomax ♦ 46k
3
votes
1
answer
219
views
1
answer
Awk command for fastq read length and number of reads?
fastq awk written 12 weeks ago by oars • 80
1
vote
2
answers
196
views
2
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Merge series and recognize end of it - AWK
merge awk written 12 weeks ago by Korsocius • 80 • updated 12 weeks ago by Alex Reynolds ♦ 23k
3
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2
answers
175
views
2
answers
Formatting problem gene table conversion
python awk bash written 3 months ago by lessismore • 470 • updated 3 months ago by ReWeeda • 30
1
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1
answer
321
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1
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Bash: awk: Calculate average of first 10 rows in column?
awk .csv bash written 3 months ago by eprichardson1 • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 106k
1
vote
1
answer
193
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1
answer
bash and awk code
awk bash written 3 months ago by Sam • 50 • updated 3 months ago by Pierre Lindenbaum ♦ 106k
1
vote
1
answer
262
views
1
answer
How to trim nucleotide sequences to length divisible by 3
incomplete codon awk written 3 months ago by al-ash • 30
2
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0
answers
376
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0
answers
diFST with awk - subtract and divide column value by their average and stdev
z-score average awk unix standard deviation written 6 months ago by pedroamandrade • 40 • updated 3 months ago by Biostar ♦♦ 20
1
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2
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265
views
2
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extracting a column by grepping particular rows
grep awk written 3 months ago by vinayjrao • 100 • updated 3 months ago by cpad0112 • 4.4k
1
vote
2
answers
256
views
2
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Picking out the first occurrence of a gene
grep awk written 4 months ago by vinayjrao • 100 • updated 4 months ago by cpad0112 • 4.4k
2
votes
3
answers
296
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5 follow
3
answers
File processing, arranging columns
linux awk bash written 4 months ago by Ambika • 20 • updated 4 months ago by cpad0112 • 4.4k
13
votes
4
answers
430
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5 follow
4
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awk one line command
awk written 4 months ago by prasoonagar • 10 • updated 4 months ago by cpad0112 • 4.4k
0
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0
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217
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0
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Removing genes found on two (or more) chromosomes from gtf file
gtf dexseq awk python bash written 4 months ago by arta • 410
2
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1
answer
312
views
1
answer
Finding Gaps in Targeted NGS Coverage Incorporating Replicates
bedtools python ngs pandas awk written 5 months ago by Robert Sicko • 530
6
votes
1
answer
398
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5 follow
1
answer
Sequence retrieval from miRBase using miRBase sequence ids
perl grep mirna rna-seq awk written 5 months ago by jinutchirayath • 0 • updated 5 months ago by genomax ♦ 46k
4
votes
1
answer
379
views
1
answer
Separate the reverse sequence from R1 and corresponding forward seq from R2
sequencing illumina paired-end next-gen awk written 5 months ago by Sajan Raju • 0
3
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3
answers
558
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6 follow
3
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How to add column to a file from from another file having one common column but different number of rows
text_processing rna-seq awk written 5 months ago by Ambika • 20 • updated 5 months ago by cpad0112 • 4.4k
8
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1
answer
858
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1
answer
Question: Mean and SD read length from a range of fastq files
fastq awk sed sequencing written 13 months ago by eoin • 20 • updated 5 months ago by Biostar ♦♦ 20
1
vote
1
answer
254
views
1
answer
Trying to get a GREP of things...
gene grep awk written 5 months ago by Hushus • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 106k
1
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1
answer
288
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1
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Extracting genes from one file using coordinate from second file
bash awk bedoops written 5 months ago by bhuwankhatri11 • 20 • updated 5 months ago by Alex Reynolds ♦ 23k
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