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2
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1
answer
103
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1
answer
Bash: find duplicates based on 2 columns and keep duplicate with lowest value in a different column
duplicates bash awk written 3 days ago by magda.meier • 20 • updated 3 days ago by shenwei356 • 3.3k
2
votes
2
answers
154
views
2
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AWK: if value falls within a range, print sum of values
awk written 11 days ago by heso • 0 • updated 11 days ago by Alex Reynolds ♦ 20k
5
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1
answer
192
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7 follow
1
answer
Tutorial: Removing rows with duplicate values based on 1 or more key values - linux awk
duplicates tutorial linux awk bash written 13 days ago by Kevin Blighe • 1.2k • updated 12 days ago by Alex Reynolds ♦ 20k
1
vote
2
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162
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5 follow
2
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Labelling sequences within fasta files according to sample name.
sequencing next-gen awk written 15 days ago by Mitra • 0 • updated 15 days ago by Brian Bushnell ♦ 14k
0
votes
0
answers
170
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0
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obtain selected elements from refseq using awk and regex
awk refseq regex written 22 days ago by theoharis • 0
0
votes
1
answer
184
views
1
answer
Extract line from sam file by column
linux sam awk written 5 weeks ago by zshores • 0 • updated 5 weeks ago by Devon Ryan ♦ 70k
4
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2
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327
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6 follow
2
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How to print two lines of several files to a new file with the speicific order?
sequence awk written 6 weeks ago by ThulasiS • 10 • updated 6 weeks ago by genomax ♦ 33k
2
votes
1
answer
231
views
1
answer
Pipe output from find to input of awk
awk written 6 weeks ago by fiona.newberry • 60 • updated 6 weeks ago by Pierre Lindenbaum ♦ 98k
0
votes
0
answers
141
views
0
answers
`chromosome_strand` all change to `1`
icgc awk written 10 weeks ago by wangshx • 0
2
votes
1
answer
168
views
1
answer
divide vcf file by consequence
vcf awk written 12 weeks ago by Medhat • 6.9k • updated 12 weeks ago by Pierre Lindenbaum ♦ 98k
6
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3
answers
191
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5 follow
3
answers
Pattren counter in fasta file
perl fasta regular expression counter awk written 3 months ago by adityagt15 • 0 • updated 3 months ago by cpad0112 • 1.9k
4
votes
3
answers
169
views
3
answers
Retrieve header of column (field) in which data is above or equals a number
commandline awk written 4 months ago by salamandra • 70 • updated 4 months ago by Pierre Lindenbaum ♦ 98k
1
vote
0
answers
256
views
0
answers
Difference in alignment summary from bam/sam and bed
alignment rna-seq awk written 4 months ago by viv3kanand • 10
5
votes
3
answers
932
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3
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[SOLVED] manipulating text in linux enviroment
pipeline sed file manipulation awk written 3.4 years ago by theodore • 20 • updated 5 months ago by Biostar ♦♦ 20
3
votes
2
answers
315
views
2
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search for low coverage regions on bam file
bedtools genomecov coverage awk written 5 months ago by mary • 0 • updated 5 months ago by Pierre Lindenbaum ♦ 98k
3
votes
2
answers
343
views
5 follow
2
answers
Find Matched records in Multiple Files based on first column
awk written 10 months ago by khanirfanbioinformatics • 0 • updated 5 months ago by shenwei356 • 3.3k
7
votes
1
answer
219
views
1
answer
awk code question
awk written 5 months ago by rbronste • 140 • updated 5 months ago by Pierre Lindenbaum ♦ 98k
3
votes
1
answer
293
views
1
answer
Question: Mean and SD read length from a range of fastq files
fastq awk sed sequencing written 6 months ago by eoin • 0 • updated 6 months ago by Pierre Lindenbaum ♦ 98k
6
votes
2
answers
283
views
2
answers
Parsing gff files using python and awk
awk written 6 months ago by Afagh • 20 • updated 6 months ago by WouterDeCoster ♦ 21k
0
votes
1
answer
143
views
1
answer
How to prepare a table of last exons
R rna-seq awk written 6 months ago by lauren.fehrman • 0 • updated 6 months ago by Pierre Lindenbaum ♦ 98k
9
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3
answers
260
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3
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[solved] Read a file once and get next lines that match a list of pattern with awk ?
reads barcode grep sed awk written 6 months ago by Franck8413 • 10
1
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2
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308
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2
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how to keep common reads in paired end reads if the number of reads are not same in read1.fq and read2.fq
perl bowtie2 sed rna-seq awk written 6 months ago by ak93sharma • 10 • updated 6 months ago by shenwei356 • 3.3k
3
votes
2
answers
272
views
2
answers
Extracting pairwise alignment info
pairwise alignement grep sed unix awk written 7 months ago by Kevin D • 10 • updated 7 months ago by 5heikki ♦ 6.6k
11
votes
6
answers
5.5k
views
11 follow
6
answers
Remove Redundant Sequences Fasta
perl fasta sequence unix awk written 3.9 years ago by empyrean999 • 140 • updated 7 months ago by Eslam Samir • 90
10
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4
answers
2.8k
views
4
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Extract specific reads from FASTQ files based on subsequence
fastq awk bash written 2.4 years ago by Paul • 700 • updated 7 months ago by springpython • 0
0
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1
answer
392
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1
answer
Renaming and editing a bed file
bed chip-seq sed awk written 8 months ago by Debbie • 10 • updated 8 months ago by Alex Reynolds ♦ 20k
2
votes
1
answer
395
views
1
answer
Matching fasta headers in a file and removing the entries that do not have a corresponding match
fasta perl sed text processing awk written 8 months ago by shreyasibiswas88 • 30 • updated 8 months ago by Pierre Lindenbaum ♦ 98k
0
votes
1
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319
views
1
answer
awk format question
bed format awk written 9 months ago by newbiebio • 60 • updated 9 months ago by genomax ♦ 33k
3
votes
1
answer
365
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1
answer
finding overlapping genes
overlap awk written 9 months ago by Afagh • 20 • updated 9 months ago by Alex Reynolds ♦ 20k
11
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5
answers
678
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5
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FASTA sequence sorting based on the header
perl fasta sequence awk written 10 months ago by akhilvbioinfo • 100 • updated 10 months ago by michael.ante • 1.6k
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