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<prev • 302 results • page 1 of 11 • next >
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Making disjoint chromosomal sites contiguous with awk
assembly sequence awk bioinformatics bash written 3 days ago by selplat21 • 10
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1
answer
134
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1
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Having some regex problems capturing strings with special chars. Could use some help.
awk sed regex written 8 days ago by a.j.wilson0000 • 10 • updated 8 days ago by Jorge Amigo ♦ 12k
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1
answer
91
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1
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Problems awking columns from map file
ped awk map convertf unix written 29 days ago by Nuthatch • 0 • updated 29 days ago by Bastien Hervé ♦ 4.8k
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2
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135
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5 follow
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Split delimited text into a new row
grep sed awk written 5 weeks ago by Ambika • 30 • updated 5 weeks ago by zx8754 ♦ 9.7k
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2
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133
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How to remove a break line \n in awk when print the result
bash awk download assembly linux written 7 weeks ago by xatabadich • 0 • updated 7 weeks ago by Pierre Lindenbaum ♦ 131k
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139
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Having trouble parsing blast tabular output with awk
tabular blast awk written 8 weeks ago by pawhitesell • 30
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147
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1
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Extract genes names from GOrilla output file
gene grep sed go awk written 8 weeks ago by rrapopor • 10 • updated 8 weeks ago by rpolicastro • 2.0k
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1
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178
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1
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Running a code in batch mode on a list of files
grep sed awk written 8 weeks ago by A • 3.9k
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1
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127
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1
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Replace matching sections of two fastas
fasta awk written 11 weeks ago by jamie.pike • 60 • updated 11 weeks ago by Pierre Lindenbaum ♦ 131k
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173
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2
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how to change bam file chromosome names using sed or awk?
bam awk written 12 weeks ago by qianxu0517 • 0 • updated 12 weeks ago by swbarnes2 ♦ 8.9k
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3
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266
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5 follow
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Split a FastQ file into smaller files
famas fastq bbmap awk written 3 months ago by Matthias Zepper • 70 • updated 12 weeks ago by genomax ♦ 91k
6
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2
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202
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How to add column to table with awk
bed-files awk unix shell bash written 3 months ago by linelr • 10 • updated 3 months ago by Shalu Jhanwar • 470
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2
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240
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awk column number is a variable
awk rna-seq bash written 3 months ago by DBScan • 20 • updated 3 months ago by user_without_id • 150
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126
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1
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Extract all seqs bewteen two seqs ID in Fastq
fastq sed awk written 3 months ago by erwan.scaon • 810 • updated 3 months ago by Pierre Lindenbaum ♦ 131k
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347
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5 follow
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Script makes different file then the manual command, but the command is the same
linux pipeline awk written 3 months ago by stan.aanhane • 30
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644
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1
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MSA ID replacement with a list ID
python bash awk written 3.0 years ago by lessismore • 930 • updated 3 months ago by Biostar ♦♦ 20
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4
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164
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5 follow
4
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Change the field separator
R field separator awk written 4 months ago by DataFanatic • 260 • updated 4 months ago by Jeffin Rockey • 1.1k
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1
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195
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1
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renaming fasta file with part of fasta header
sed awk written 4 months ago by KG • 10 • updated 4 months ago by genomax ♦ 91k
4
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1
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261
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1
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How to filter a VCF file with a list of CHR or contig IDs?
vcf chromosome contigs vcftools awk written 4 months ago by lexic2713 • 10 • updated 4 months ago by drkennetz • 500
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4
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281
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6 follow
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Comparing multiple columns from 2 files using awk, perl or python
perl python awk written 4 months ago by aboozar.soorni • 30
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1
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156
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1
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Grep VCF position awk
vcf grep awk written 4 months ago by the_cowa • 40 • updated 4 months ago by ATpoint ♦ 40k
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3
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191
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3
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unix, awk or sed question on splitting lines
sed unix awk written 4 months ago by geneart$$ • 40 • updated 4 months ago by genomax ♦ 91k
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2
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239
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8 follow
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How do I match two files using one column as reference?
command line awk written 4 months ago by eennadi • 0 • updated 4 months ago by Yean • 120
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330
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Extract list of gene coordinates from gff file
gene python gff grep awk written 4 months ago by the_cowa • 40
2
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159
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0
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Filtering Augustus GTF based on protein sequence
augustus gtf protein sequence awk written 4 months ago by jamie.pike • 60
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1
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211
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1
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Bed file grepping from the list
bed grep awk written 4 months ago by the_cowa • 40 • updated 4 months ago by Pierre Lindenbaum ♦ 131k
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1
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197
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1
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per sample mean coverage and standard deviation
bash awk written 5 months ago by ijlal.hyder2012 • 10 • updated 5 months ago by husensofteng • 270
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2
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163
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2
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removing rows if X percentages of columns / fields are empty
next-gen sed snp awk written 5 months ago by waqasnayab • 200 • updated 5 months ago by cpad0112 ♦ 14k
3
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220
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1
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Extracting subset from GFF3 file based on sequence headers from a FASTA file
fasta gff3 awk written 5 months ago by adityabandla • 30 • updated 5 months ago by lieven.sterck ♦ 8.7k
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3
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220
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5 follow
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Extract fasta sequences based on ids file
fasta perl sequence sed awk written 5 months ago by marcelolaia • 10
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