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3
votes
0
answers
120
views
0
answers
Extract Hard-clipped and soft-clipped values from fifth column
perl sequencing awk bash written 1 day ago by Ram • 130 • updated 1 day ago by Pierre Lindenbaum ♦ 115k
3
votes
1
answer
93
views
1
answer
Count the number of homozygous and heterozygous variants in VCF file
1000genomes allele awk count written 13 days ago by aadhirareddy1323 • 20 • updated 13 days ago by finswimmer ♦ 7.9k
5
votes
1
answer
196
views
1
answer
How to separate a strain of MTB drug wise?
python grep sed loop awk written 7 weeks ago by S AR • 50
2
votes
1
answer
117
views
1
answer
is there a way to get SRA info (Paired Library, Sample id, Seq Tech... etc) using a list of SRA IDS?
sra awk written 22 days ago by S AR • 50
11
votes
4
answers
188
views
4
answers
Extract a word from inside the text
R awk regex written 25 days ago by mostafarafiepour • 60 • updated 25 days ago by cpad0112 • 10k
5
votes
1
answer
226
views
1
answer
awk and sed in bash script and no output
bash sed awk written 26 days ago by bk11 • 30 • updated 26 days ago by Alex Reynolds ♦ 26k
5
votes
2
answers
223
views
2
answers
SRA files bulk downloads
wget awk aspera recursive linux written 5 weeks ago by S AR • 50
10
votes
2
answers
217
views
2
answers
Filter VCF with bash commands
vcf grep awk bash written 5 weeks ago by ajuiwl • 30 • updated 5 weeks ago by dariober ♦ 9.7k
1
vote
0
answers
186
views
0
answers
Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 3 months ago by m93 • 110 • updated 5 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
162
views
1
answer
Separate fasta file for each locus
fasta radseq awk written 5 weeks ago by NM • 0
19
votes
0
answers
605
views
13 follow
0
answers
Forum: Awk in Bioinformatics
perl forum shell awk written 3 months ago by Shicheng Guo • 7.3k
10
votes
3
answers
226
views
3
answers
compare two file to retrieve common lines
bash awk written 6 weeks ago by Sam • 80
0
votes
1
answer
227
views
1
answer
Help in Python and AWK: Printing absolute difference value between consecutive rows values, if column1 value is same
python awk written 8 weeks ago by tinkuhim007 • 0 • updated 7 weeks ago by Kevin Blighe ♦ 33k
12
votes
1
answer
243
views
1
answer
Add text in somewhere middle of line using information from the same line in file.
sed unix awk written 8 weeks ago by bk11 • 30 • updated 8 weeks ago by jrj.healey ♦ 9.1k
0
votes
2
answers
117
views
2
answers
Add string to a column of a file and retain the rest
linux awk written 8 weeks ago by Inquisitive8995 • 40
7
votes
1
answer
213
views
6 follow
1
answer
Merge two SNP vcf files
vcf snp awk written 9 weeks ago by fufuyou • 100 • updated 9 weeks ago by zx8754 ♦ 6.0k
10
votes
2
answers
276
views
2
answers
Compare two genotype data frame and calculate percentage of differences
R linux awk written 10 weeks ago by dorarinyo88 • 20 • updated 10 weeks ago by Pierre Lindenbaum ♦ 115k
8
votes
1
answer
2.0k
views
1
answer
Question: Mean and SD read length from a range of fastq files
fastq awk sed sequencing written 20 months ago by eoin • 30 • updated 11 weeks ago by savscosta • 0
4
votes
2
answers
232
views
2
answers
If a string appears twice in column 1, select the higher value in column 2
awk bash written 4 months ago by drkennetz • 360 • updated 12 weeks ago by zx8754 ♦ 6.0k
3
votes
1
answer
266
views
1
answer
Adding optional tags to a BAM file
single-cell bam sam rna-seq awk written 3 months ago by sc243 • 0
6
votes
3
answers
366
views
3
answers
How to extract certain tag value by key from sam/bam file?
awk linux samtools sam bash written 3 months ago by yech1990 • 20 • updated 3 months ago by Pierre Lindenbaum ♦ 115k
8
votes
2
answers
224
views
2
answers
Struggle with awk command
awk written 3 months ago by Bastien Hervé • 2.7k • updated 3 months ago by dariober ♦ 9.7k
3
votes
1
answer
669
views
1
answer
finding overlapping genes
overlap awk written 2.0 years ago by Afagh • 70 • updated 4 months ago by Biostar ♦♦ 20
2
votes
1
answer
344
views
1
answer
bedtools intersect with "bedgraph" style with multiple extra columns of data for multiple samples?
bedtools intersect awk written 4 months ago by dansapozhnikov • 10 • updated 4 months ago by Alex Reynolds ♦ 26k
2
votes
1
answer
267
views
1
answer
Is there a code to find consensus motif
python C shell awk written 4 months ago by vinayjrao • 110 • updated 4 months ago by Carlo Yague • 4.3k
0
votes
1
answer
374
views
1
answer
comparing two files and adding columns of one file to another file if a fields in a specific column match in both files
compare files awk linux written 4 months ago by eDNAuRNA • 0 • updated 4 months ago by michael.ante • 2.8k
35
votes
4
answers
20k
views
23 follow
4
answers
How To Filter Multi Fasta By Length??
awk written 5.3 years ago by HG • 1.1k • updated 4 months ago by RamRS ♦ 19k
1
vote
1
answer
263
views
1
answer
Bedtools Slop for Specific Features
bedtools bedtool awk written 4 months ago by gtasource • 20 • updated 4 months ago by Jeffin Rockey • 980
12
votes
3
answers
1.2k
views
5 follow
3
answers
Extract rows present in file1 and not in file 2
gene awk bash written 22 months ago by biostarsb • 20 • updated 4 months ago by zx8754 ♦ 6.0k
4
votes
2
answers
286
views
2
answers
Split ordered fasta file by alphabetical group using awk
fasta one-liner awk written 5 months ago by Josh Herr ♦ 5.6k • updated 5 months ago by cpad0112 • 10k
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