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2
votes
2
answers
100
views
5 follow
2
answers
how to unique a file row-wise?
perl awk sed linux written 10 hours ago by sharmatina189059 • 40 • updated 5 hours ago by dare_devil • 860
1
vote
1
answer
80
views
1
answer
Subseq a FASTA file
sed awk written 4 days ago by Explorer • 10
2
votes
3
answers
59
views
3
answers
Read detection with pattern in paired end FASTQ file
fastq paired end awk written 5 days ago by amitpande74 • 10 • updated 5 days ago by GenoMax ♦ 94k
0
votes
1
answer
74
views
1
answer
How to filter evidence modeler gene prediction output
gene annotation awk shell python written 8 days ago by santhoshhegde278 • 0 • updated 7 days ago by Joe ♦ 18k
2
votes
1
answer
98
views
1
answer
Compare elements between rows and columns
shell rna-seq awk written 11 days ago by vinayjrao • 200
19
votes
4
answers
2.5k
views
10 follow
4
answers
Remove duplicates in an extremely large text file
uniq plink snp awk written 23 months ago by OAJn8634 • 60 • updated 13 days ago by Biostar ♦♦ 20
19
votes
5
answers
18k
views
14 follow
5
answers
Extract fasta sequences from a file using a list in another file.
fasta grep header extract awk written 2.6 years ago by EBP91 • 10 • updated 17 days ago by Rashedul Islam • 390
2
votes
2
answers
118
views
2
answers
Modify query names longer than 252
minimap2 fastq samtools awk written 27 days ago by leonardo.caserta • 0 • updated 27 days ago by 5heikki ♦ 9.1k
2
votes
2
answers
789
views
2
answers
Reduce FASTA file name
fasta genome perl awk written 5.0 years ago by akhilvbioinfo • 160 • updated 4 weeks ago by Biostar ♦♦ 20
28
votes
4
answers
11k
views
12 follow
4
answers
Binning Of Chromosome Data
awk written 7.7 years ago by sheetalshetty13 • 60 • updated 4 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
148
views
1
answer
Extracting values with certain patterns by searching all columns for each line using "awk"
awk unix bash written 6 weeks ago by ClkElf • 30 • updated 6 weeks ago by Pierre Lindenbaum ♦ 133k
0
votes
1
answer
164
views
1
answer
How to get transcript ID and tpm from the gtf files of ballgown outputs?
gtf ballgown hisat2 rna-seq awk written 6 weeks ago by newbie • 90 • updated 6 weeks ago by _r_am ♦ 32k
3
votes
1
answer
163
views
1
answer
Split and recombine columns with R
R awk cog cog annotation annotation written 7 weeks ago by Sissi • 50 • updated 7 weeks ago by bioinformatics2020 • 570
1
vote
1
answer
222
views
1
answer
How to make combinations of the values in column 2
perl random combinations awk combinations python written 10 weeks ago by debarunacharya • 0 • updated 8 weeks ago by i-blis • 0
1
vote
1
answer
186
views
1
answer
How to use a bash variable in awk calculation
bash awk written 9 weeks ago by nadarajan_v • 0 • updated 9 weeks ago by lieven.sterck ♦ 9.4k
5
votes
2
answers
168
views
2
answers
Splitting a semi colon value in new line and copying its neighboring cell values
python awk excel unix written 10 weeks ago by S AR • 50
0
votes
0
answers
154
views
0
answers
fasta file extraction
fasta sed awk written 11 weeks ago by amitpande74 • 10 • updated 11 weeks ago by cpad0112 ♦ 14k
0
votes
0
answers
173
views
0
answers
Making disjoint chromosomal sites contiguous with awk
assembly sequence awk bioinformatics bash written 12 weeks ago by selplat21 • 20
1
vote
1
answer
247
views
1
answer
Having some regex problems capturing strings with special chars. Could use some help.
awk sed regex written 3 months ago by a.j.wilson0000 • 10 • updated 3 months ago by Jorge Amigo ♦ 12k
2
votes
1
answer
141
views
1
answer
Problems awking columns from map file
ped awk map convertf unix written 3 months ago by Nuthatch • 0 • updated 3 months ago by Bastien Hervé ♦ 4.9k
9
votes
2
answers
185
views
5 follow
2
answers
Split delimited text into a new row
grep sed awk written 4 months ago by Ambika • 40 • updated 4 months ago by zx8754 ♦ 9.9k
0
votes
2
answers
184
views
2
answers
How to remove a break line \n in awk when print the result
bash awk download assembly linux written 4 months ago by xatabadich • 0 • updated 4 months ago by Pierre Lindenbaum ♦ 133k
6
votes
0
answers
189
views
0
answers
Having trouble parsing blast tabular output with awk
tabular blast awk written 4 months ago by pawhitesell • 30
3
votes
1
answer
206
views
1
answer
Extract genes names from GOrilla output file
gene grep sed go awk written 4 months ago by rrapopor • 10 • updated 4 months ago by rpolicastro ♦ 3.2k
2
votes
1
answer
239
views
1
answer
Running a code in batch mode on a list of files
grep sed awk written 4 months ago by A • 3.9k
2
votes
1
answer
172
views
1
answer
Replace matching sections of two fastas
fasta awk written 5 months ago by jamie.pike • 60 • updated 5 months ago by Pierre Lindenbaum ♦ 133k
2
votes
2
answers
234
views
2
answers
how to change bam file chromosome names using sed or awk?
bam awk written 5 months ago by qianxu0517 • 0 • updated 5 months ago by swbarnes2 ♦ 9.4k
6
votes
3
answers
359
views
5 follow
3
answers
Split a FastQ file into smaller files
famas fastq bbmap awk written 5 months ago by Matthias Zepper • 70 • updated 5 months ago by GenoMax ♦ 94k
6
votes
2
answers
367
views
2
answers
How to add column to table with awk
bed-files awk unix shell bash written 6 months ago by linelr • 10 • updated 6 months ago by Shalu Jhanwar • 480
6
votes
2
answers
336
views
2
answers
awk column number is a variable
awk rna-seq bash written 6 months ago by DBScan • 20 • updated 6 months ago by user_without_id • 150
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