Showing: awkreset
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AWK: if value falls within a range, print sum of values
awk written 11 days ago by heso0 • updated 11 days ago by Alex Reynolds20k
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192
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7 follow
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Labelling sequences within fasta files according to sample name.
sequencing next-gen awk written 15 days ago by Mitra0 • updated 15 days ago by Brian Bushnell14k
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170
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184
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Extract line from sam file by column
linux sam awk written 5 weeks ago by zshores0 • updated 5 weeks ago by Devon Ryan70k
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327
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6 follow
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How to print two lines of several files to a new file with the speicific order?
sequence awk written 6 weeks ago by ThulasiS10 • updated 6 weeks ago by genomax33k
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231
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Pipe output from find to input of awk
awk written 6 weeks ago by fiona.newberry60 • updated 6 weeks ago by Pierre Lindenbaum98k
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141
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`chromosome_strand` all change to `1`
icgc awk written 10 weeks ago by wangshx0
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1
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168
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1
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divide vcf file by consequence
vcf awk written 12 weeks ago by Medhat6.9k • updated 12 weeks ago by Pierre Lindenbaum98k
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191
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5 follow
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Pattren counter in fasta file
perl fasta regular expression counter awk written 3 months ago by adityagt150 • updated 3 months ago by cpad01121.9k
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169
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[SOLVED] manipulating text in linux enviroment
pipeline sed file manipulation awk written 3.4 years ago by theodore20 • updated 5 months ago by Biostar ♦♦ 20
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315
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search for low coverage regions on bam file
bedtools genomecov coverage awk written 5 months ago by mary0 • updated 5 months ago by Pierre Lindenbaum98k
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5 follow
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Find Matched records in Multiple Files based on first column
awk written 10 months ago by khanirfanbioinformatics0 • updated 5 months ago by shenwei3563.3k
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awk code question
awk written 5 months ago by rbronste140 • updated 5 months ago by Pierre Lindenbaum98k
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293
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Question: Mean and SD read length from a range of fastq files
fastq awk sed sequencing written 6 months ago by eoin0 • updated 6 months ago by Pierre Lindenbaum98k
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Parsing gff files using python and awk
awk written 6 months ago by Afagh20 • updated 6 months ago by WouterDeCoster21k
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1
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143
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1
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How to prepare a table of last exons
R rna-seq awk written 6 months ago by lauren.fehrman0 • updated 6 months ago by Pierre Lindenbaum98k
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Extracting pairwise alignment info
pairwise alignement grep sed unix awk written 7 months ago by Kevin D10 • updated 7 months ago by 5heikki6.6k
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11 follow
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Remove Redundant Sequences Fasta
perl fasta sequence unix awk written 3.9 years ago by empyrean999140 • updated 7 months ago by Eslam Samir90
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Extract specific reads from FASTQ files based on subsequence
fastq awk bash written 2.4 years ago by Paul700 • updated 7 months ago by springpython0
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392
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Renaming and editing a bed file
bed chip-seq sed awk written 8 months ago by Debbie10 • updated 8 months ago by Alex Reynolds20k
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0
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1
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319
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awk format question
bed format awk written 9 months ago by newbiebio60 • updated 9 months ago by genomax33k
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1
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365
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1
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finding overlapping genes
overlap awk written 9 months ago by Afagh20 • updated 9 months ago by Alex Reynolds20k
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678
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FASTA sequence sorting based on the header
perl fasta sequence awk written 10 months ago by akhilvbioinfo100 • updated 10 months ago by michael.ante1.6k
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