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<prev • 267 results • page 1 of 9 • next >
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How to extract multi-line protein sequences with Ids present in headers ?
perl sed awk written 1 day ago by sharmatina189059 • 40 • updated 1 day ago by Pierre Lindenbaum ♦ 127k
9
votes
1
answer
135
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6 follow
1
answer
combine fasta sequences in combination from two different files
fasta unix shell awk written 5 weeks ago by sayaneshome.rsg • 0 • updated 5 weeks ago by Pierre Lindenbaum ♦ 127k
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3
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103
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8 follow
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Extract each column from a txt file and save into separate files, with the first line as file names
shell awk written 5 weeks ago by Cecelia • 20 • updated 5 weeks ago by Arup Ghosh ♦ 2.4k
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1
answer
96
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1
answer
filtering out lines (rows) based on repeated zero values with awk in linux
filter out awk zero values written 7 weeks ago by rgescudero • 30 • updated 7 weeks ago by shenwei356 ♦ 5.1k
3
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1
answer
142
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1
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grep sorting question
grep awk sed unix bash written 7 weeks ago by rbronste • 340 • updated 7 weeks ago by RamRS ♦ 26k
5
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1
answer
181
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1
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Counting the number of values within a range in a specific column
awk written 9 weeks ago by arsala521 • 10 • updated 9 weeks ago by zx8754 ♦ 9.1k
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0
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110
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0
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Difficult filtering scenario of BED file
grep sed awk written 10 weeks ago by rbronste • 340
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1
answer
107
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1
answer
awk for interval midpoints and length
awk written 11 weeks ago by rbronste • 340 • updated 11 weeks ago by zx8754 ♦ 9.1k
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4
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184
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7 follow
4
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How to remove just sequence ID's from a fasta file with multiple sequences
fasta grep sequence awk written 12 weeks ago by subrahmanya • 0 • updated 12 weeks ago by Joe ♦ 16k
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135
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1
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Using xargs to tabix each line of a bed to a vcf
vcf tabix xargs awk written 4 months ago by jvijai • 1.2k • updated 4 months ago by ATpoint ♦ 32k
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111
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How to get unique counts saved in a file
linux awk unique counts sort written 4 months ago by kittys • 0 • updated 4 months ago by genomax ♦ 80k
4
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2
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144
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5 follow
2
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awk gff column change
gff awk written 4 months ago by rob234king • 580 • updated 4 months ago by yztxwd • 300
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0
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152
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Help with awk command
print awk written 5 months ago by someler • 0 • updated 5 months ago by genomax ♦ 80k
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328
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Comparing two columns of one file with two columns of another file, print all the matching in one file and mismatching in another file. Python or Bash ?
python matching join awk written 5 months ago by Thanujay S • 0 • updated 5 months ago by massa.kassa.sc3na • 250
2
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249
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1
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How do you extract longest transcript from fasta file using length and header IDs?
fasta awk written 5 months ago by DNAngel • 40 • updated 5 months ago by JC ♦ 9.7k
9
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2
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405
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6 follow
2
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Comparing values of a column if it falls between values of two columns of a different data set and creating new column
R awk linux written 5 months ago by eDNAuRNA • 20 • updated 5 months ago by zx8754 ♦ 9.1k
33
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5
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19k
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28 follow
5
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Filtering Fastq Sequences Based On Lengths
perl unix awk written 7.1 years ago by empyrean999 • 160 • updated 5 months ago by komjinhubuio • 10
2
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1
answer
224
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1
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Extract some interest sequences with a new name
tutorial awk written 6 months ago by Sillpositive • 20 • updated 6 months ago by JC ♦ 9.7k
9
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1
answer
229
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1
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Limiting interval sizes with awk
bedtools bed bedops awk interval written 6 months ago by rbronste • 340
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3
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279
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3
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Help with awk loop
awk written 6 months ago by Francisco Muñoz • 10
5
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1
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214
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1
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How to print lines of two file where column 2 and 3 of File 1 fall in between column 2 and 3 of file 2
python awk bash written 6 months ago by akinyemiibukun • 20 • updated 6 months ago by Pierre Lindenbaum ♦ 127k
3
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1
answer
214
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1
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How to generate a combined read count txt file with header as file name
R bash awk linux written 7 months ago by Bioinfonext • 200
32
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5
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13k
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8 follow
5
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Quick One Liner For Fastq Header Renaming
fastq awk written 7.0 years ago by Josh Herr ♦ 5.7k • updated 7 months ago by ATpoint ♦ 32k
3
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2
answers
292
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7 follow
2
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How to find those files name which contains specific symbol i.e. underscore sign in column2?
find R grep awk written 7 months ago by sidrarafi89 • 10 • updated 7 months ago by bruce.moran • 720
12
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1
answer
301
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7 follow
1
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extract lines with multiple conditions on multiple fields/column
grep sed awk written 7 months ago by Sam • 20 • updated 7 months ago by Arup Ghosh ♦ 2.4k
1
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1
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437
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5 follow
1
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How to filter GTF file and only print lines where the tag is a certain value?
gtf awk written 7 months ago by Tails • 50
3
votes
1
answer
2.2k
views
1
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Modifying fasta header
perl python sed unix awk written 5.7 years ago by empyrean999 • 160 • updated 7 months ago by RamRS ♦ 26k
4
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3
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296
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6 follow
3
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Convert a two-column file to a single file with interlayed rows
fasta bash sequence awk paste written 7 months ago by JGuVa • 10
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2
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246
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2
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How to remove all characters after a specific pattern?
linux sed rna-seq awk written 7 months ago by star • 230 • updated 7 months ago by Jeffin Rockey • 1.1k
3
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2
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7.4k
views
2
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How To Extract Reads With Wrong Insert Size With Samtools
bam samtools awk written 7.4 years ago by Assa Yeroslaviz • 1.3k • updated 7 months ago by Biostar ♦♦ 20
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