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Simulated background and peak smoothing in MACS2

background macs2 peakcalling written 11 weeks ago by 9606 • 320 • updated 11 weeks ago by ATpoint ♦ 21k

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961

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How to generate random genomic sequences that are GC- and length-matched to my input sequences?

gc sequence background random written 17 months ago by Xianjun • 250 • updated 17 months ago by dariober ♦ 10k

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Cancer gene list enrichment

R background gsea rna-seq cancer written 4.8 years ago by Saad Khan • 360 • updated 4.8 years ago by dktarathym • 40

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2.0k

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Detection of genes expressed above background for Gene ST Arrays (as opposed to Exon ST Arrays)

genest background expression genechip written 5.1 years ago by komal.rathi • 3.4k • updated 4.9 years ago by Sean Davis ♦ 25k

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Recent Replies

C: how to extract HETATM structures from pdb with python by woojoy14 • 0
It helps a lot, thank you!
C: how to extract HETATM structures from pdb with python by woojoy14 • 0
Thank you very much for your help!
C: mmquant run failure by ATpoint ♦ 21k
Can you post the error message, if there is one? Did you validate the GTF is correctly formatted,...
A: chop Nanopore (long) reads by ATpoint ♦ 21k
Without further context I assume you want to *trim* (this is the correct term here) your reads to...
C: GenBank accesion number to gene id by trumbia • 10
I have DESeq2 Result so that I do not name of the protein by one by. I can not check all of them ...
C: transcript assembling problem by cufflinks by kristoffer.vittingseerup • 2.2k
The main function of the ```-dta-cufflinks``` in Hisat is to ensure only longer anchors are repor...
C: chop Nanopore (long) reads by lijingtang2010 • 0
Sorry for that, I want to chop Nanopore reads at given positions and each read was chopped at dif...
C: chop Nanopore (long) reads by lijingtang2010 • 0
Do you have any suggestion?
A: Primer3: p3in failure by h.mon ♦ 27k
The fasta file has spaces at the headers, and the .misa file has replaced these spaces by undersc...
C: SSR mining and primer design (MISA and Primer3) by h.mon ♦ 27k
Replace the spaces at the headers of the fasta file by underscores and then try p3_in.pl again. ...
C: Primer3: p3in failure by Viz • 30
I would recommend putting your .misa file into http://bioinfo.ut.ee/primer3/ and seeing if things...
C: GenBank accesion number to gene id by genomax ♦ 70k
I am not sure why you need ensemblgene ID's but a straight conversion may not be available. You m...

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