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C: Difficulty in Host removal by Bowtie2,samtools and bedtools by arup • 840
Can you share the commands you are using?
C: plink --assoc command gives "NA" for all the analysis (F_A,F_U,A2,CHISQ,P,OR val by kushagraprasad24 • 0
Command i ran :- plink --file input --assoc --out result
C: plink --assoc command gives "NA" for all the analysis (F_A,F_U,A2,CHISQ,P,OR val by kushagraprasad24 • 0
This is the .map data:- 1 BS00033749_51 -9 13 1 BS00100774_51 -9 13 1 BobWhite_c1...
C: plink --assoc command gives "NA" for all the analysis (F_A,F_U,A2,CHISQ,P,OR val by kushagraprasad24 • 0
This is the .ped data:- -9 450975 -9 -9 -9 2 A A C C G G C C A A G G T T A A C C C C A A ...
A: How to distinguish if a gene is a paralogue or an isoform? by kashifalikhan007 • 50
According to the basic definition isoforms are coming from same gene, so their location should be...
C: What tool can be used to predct regulatory element within an input sequence ? by lin.pei26 • 60
Thank you jrj.healey ! I will have a check!
C: How to create multiple density plots in one by a.b.federico • 0
Terrific answer. The reshape2 package is the key. Thank you!
C: Minimap2 generated a very large paf, and miniasm failed to get gfa, how to do wi by lovenlong • 10
It works, thank you.
C: How to distinguish if a gene is a paralogue or an isoform? by Vitis • 1.9k
Not a typical bioinformatics question, but I'll give it a try. Probably both are true. This gene ...
C: Samtools: Question about filtering BAM file using flag by SDin • 0
I got it. Many thanks for your kind help!
C: Removing duplicated mutations from a txt by Friederike ♦ 2.5k
then: 1. read in the original file into R 2. use `unique(df)` 3. use that `dndscv` function and...
C: How to get short and sweet gene names/description for gene IDs? by BIOAWY • 110
Thank a heaps finswimmer :)