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2
votes
2
answers
155
views
2
answers
ballgown has "." as Gene Names
assembly ballgown rna-seq written 5 weeks ago by Fawzi Yassine • 0
7
votes
1
answer
281
views
1
answer
Error while loading the data structrure in the ballgown tool
new tuxedo pipeline ballgown rna-seq written 3 months ago by swarajgaikwad15 • 0 • updated 3 months ago by biokoala ♦ 3.6k
7
votes
1
answer
690
views
1
answer
Ballgown finds few DE genes compared to DESeq
ballgown deseq2 rna-seq written 7 months ago by corend • 70 • updated 3 months ago by shenwei1376 • 0
2
votes
0
answers
338
views
0
answers
Problem in analysis of Ballgown output by R (why q value are same in result ? )
R ballgown differential expression (de) analysis written 4 months ago by amitunited0532 • 10 • updated 4 months ago by ATpoint ♦ 13k
0
votes
0
answers
244
views
0
answers
Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
assembly ballgown rna-seq igv written 4 months ago by iraia.munoa • 50 • updated 4 months ago by RamRS ♦ 20k
2
votes
1
answer
438
views
1
answer
FPKM matrix after stringtie using ballgown
stringtie ballgown fpkm rna-seq written 5 months ago by Vasu • 300 • updated 5 months ago by Adrian Pelin • 2.2k
0
votes
1
answer
289
views
1
answer
Outputing gexpr() with gene_name (or gene symbol) instead of MSTRG.x gene_id
ballgown stringtie rna-seq gene_name written 6 months ago by ever_wudi • 10
5
votes
1
answer
1.3k
views
1
answer
Stringtie prepDE.py Error line 32
stringtie deseq2 ballgown rna-seq prepde.py written 10 months ago by bryce.kirby • 0 • updated 9 months ago by Biostar ♦♦ 20
0
votes
1
answer
640
views
1
answer
Code for DEG analysis using Ballgown
ballgown stattest ngs rna-seq written 11 months ago by Arindam Ghosh • 150 • updated 10 months ago by biokoala ♦ 3.6k
0
votes
0
answers
454
views
0
answers
What measure should be used to calculate fold-change while using Ballgown to compare D.E genes between 2 conditions?
ballgown stringtie rna-seq hisat2 written 11 months ago by nancy • 70
0
votes
0
answers
385
views
0
answers
specification of linear model and log transformation in ballgown
package function R ballgown rna-seq written 13 months ago by amy16 • 30
0
votes
0
answers
273
views
0
answers
ballgownrsem function usage details
ballgown tuxedo rna-seq dge written 13 months ago by amy16 • 30
2
votes
0
answers
612
views
0
answers
Error in reading ballgown object
R ballgown rna-seq written 13 months ago by amy16 • 30 • updated 13 months ago by WouterDeCoster ♦ 36k
0
votes
0
answers
1.1k
views
0
answers
Error in file(file, "rt") : invalid 'description' argument
R ballgown rna-seq written 13 months ago by amy16 • 30 • updated 13 months ago by Kevin Blighe ♦ 37k
2
votes
0
answers
402
views
0
answers
syntax error in R when run on HPC
R ballgown rna-seq written 13 months ago by amy16 • 30
1
vote
1
answer
471
views
1
answer
Differential gene expression anaylsis -Ballgown
ballgown stringtie rna-seq written 13 months ago by amy16 • 30 • updated 13 months ago by Hussain Ather • 890
2
votes
1
answer
711
views
1
answer
Ballgown library load
ballgown rna-seq written 14 months ago by amy16 • 30 • updated 14 months ago by h.mon ♦ 23k
2
votes
0
answers
819
views
0
answers
stringtie + ballgown for multivariate analysis of rna-seq data
stringtie ballgown rna-seq multivariate written 14 months ago by nancy • 70
2
votes
0
answers
446
views
0
answers
Differential gene expression
ballgown tuxedo rna-seq written 14 months ago by amy16 • 30 • updated 14 months ago by RamRS ♦ 20k
1
vote
0
answers
513
views
0
answers
Stringtie output for DGE
stringtie ballgown written 15 months ago by amy16 • 30
0
votes
0
answers
653
views
0
answers
Adding gene names to ballgown object gexpr(bg)
ballgown rna-seq written 15 months ago by maria.traka • 20
0
votes
0
answers
1.9k
views
0
answers
Ballgown Error in file(file, "rt") : invalid 'description' argument
ballgown rna-seq written 17 months ago by vinayjrao • 110
0
votes
0
answers
1.3k
views
0
answers
stringtie (.gtf) vs ballgown (t_data.ctab) FPKM values do not match - why?
stringtie ballgown fpkm rna-seq written 20 months ago by cpak1981 • 100
1
vote
0
answers
1.6k
views
0
answers
Error encountered while running stattest from ballgown package
ballgown stattest bioconductor rna-seq written 22 months ago by biokoala ♦ 3.6k
15
votes
4
answers
6.1k
views
4
answers
Gene names in Ballgown differential expression analysis
ballgown rna-seq written 2.3 years ago by Albert • 140 • updated 22 months ago by mcalleja • 50
1
vote
1
answer
1.4k
views
1
answer
How do you find ballgown package for differential expression analysis?
ballgown differential expression written 24 months ago by seta • 1.1k
0
votes
0
answers
1.5k
views
0
answers
Ballgown plotTranscripts function
R ballgown trancript rna-seq plot written 3.0 years ago by Matina • 160
<prev • 27 results • page 1 of 1 • next >
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