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5
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262
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Stringtie prepDE.py Error line 32
stringtie deseq2 ballgown rna-seq prepde.py written 11 weeks ago by bryce.kirby • 0 • updated 26 days ago by Biostar ♦♦ 20
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1
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214
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1
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Code for DEG analysis using Ballgown
ballgown stattest ngs rna-seq written 3 months ago by ag1805x • 80 • updated 8 weeks ago by Vijay Lakhujani ♦ 2.5k
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161
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What measure should be used to calculate fold-change while using Ballgown to compare D.E genes between 2 conditions?
ballgown stringtie rna-seq hisat2 written 3 months ago by nancy • 50
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240
views
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specification of linear model and log transformation in ballgown
package function R ballgown rna-seq written 5 months ago by amy16 • 20
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140
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ballgownrsem function usage details
ballgown tuxedo rna-seq dge written 5 months ago by amy16 • 20
2
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309
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Error in reading ballgown object
R ballgown rna-seq written 5 months ago by amy16 • 20 • updated 5 months ago by WouterDeCoster ♦ 29k
0
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338
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Error in file(file, "rt") : invalid 'description' argument
R ballgown rna-seq written 5 months ago by amy16 • 20 • updated 5 months ago by Kevin Blighe ♦ 21k
2
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0
answers
191
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0
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syntax error in R when run on HPC
R ballgown rna-seq written 5 months ago by amy16 • 20
1
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1
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273
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1
answer
Differential gene expression anaylsis -Ballgown
ballgown stringtie rna-seq written 5 months ago by amy16 • 20 • updated 5 months ago by Hussain Ather • 860
2
votes
1
answer
406
views
1
answer
Ballgown library load
ballgown rna-seq written 6 months ago by amy16 • 20 • updated 6 months ago by h.mon ♦ 15k
1
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0
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462
views
0
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stringtie + ballgown for multivariate analysis of rna-seq data
stringtie ballgown rna-seq multivariate written 6 months ago by nancy • 50
2
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0
answers
302
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0
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Differential gene expression
ballgown tuxedo rna-seq written 6 months ago by amy16 • 20 • updated 6 months ago by Ram ♦ 15k
1
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328
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0
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Stringtie output for DGE
stringtie ballgown written 7 months ago by amy16 • 20
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329
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0
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Adding gene names to ballgown object gexpr(bg)
ballgown rna-seq written 7 months ago by maria.traka • 20
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1.0k
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Ballgown Error in file(file, "rt") : invalid 'description' argument
ballgown rna-seq written 9 months ago by vinayjrao • 100
0
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0
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781
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stringtie (.gtf) vs ballgown (t_data.ctab) FPKM values do not match - why?
stringtie ballgown fpkm rna-seq written 12 months ago by cpak1981 • 100
0
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950
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Error encountered while running stattest from ballgown package
ballgown stattest bioconductor rna-seq written 13 months ago by Vijay Lakhujani ♦ 2.5k
10
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4
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4.1k
views
4
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Gene names in Ballgown differential expression analysis
ballgown rna-seq written 20 months ago by Albert • 120 • updated 14 months ago by mcalleja • 30
1
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1
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980
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1
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How do you find ballgown package for differential expression analysis?
ballgown differential expression written 16 months ago by seta • 980
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1.2k
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0
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Ballgown plotTranscripts function
R ballgown trancript rna-seq plot written 2.4 years ago by Matina • 150
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