Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: ballgown • reset
or   Classic search
<prev • 33 results • page 1 of 2 • next >
0
votes
0
answers
157
views
0
answers
Ballgown for visualization of gene expression
ballgown covariate written 10 weeks ago by dzo.ilic.i • 0 • updated 12 days ago by Biostar ♦♦ 20
1
vote
0
answers
199
views
0
answers
Isoform level differential expression
stringtie ballgown rna-seq written 8 weeks ago by rnaseql • 0
0
votes
0
answers
233
views
0
answers
hisat2-stringtie-ballgown pipeline gives high p-value and q-value for RNA-seq of Arabidopsis thaliana
ballgown arabidopsis stringtie rna-seq hisat2 written 3 months ago by tiancaigg • 0
1
vote
0
answers
210
views
0
answers
How to add a specific column from related table
R bioconductor ballgown rna-seq written 3 months ago by Redse • 30
11
votes
2
answers
311
views
5 follow
2
answers
rowVars function, used in ballgown analysis not available for R 3.5.2, alternatives?
R ballgown rna-seq rowvars written 3 months ago by RNAseqer • 110 • updated 3 months ago by kristoffer.vittingseerup • 1.8k
0
votes
0
answers
276
views
0
answers
ballgown error: Error in file(file, "rt") : invalid 'description' argument Calls: ballgown -> read.table -> file
ballgown stringtie rna-seq written 3 months ago by RNAseqer • 110
2
votes
2
answers
285
views
2
answers
ballgown has "." as Gene Names
assembly ballgown rna-seq written 5 months ago by Fawzi Yassine • 10
7
votes
1
answer
494
views
1
answer
Error while loading the data structrure in the ballgown tool
new tuxedo pipeline ballgown rna-seq written 7 months ago by swarajgaikwad15 • 0 • updated 7 months ago by Vijay Lakhujani ♦ 4.1k
7
votes
1
answer
979
views
1
answer
Ballgown finds few DE genes compared to DESeq
ballgown deseq2 rna-seq written 11 months ago by corend • 70 • updated 7 months ago by shenwei1376 • 0
2
votes
0
answers
543
views
0
answers
Problem in analysis of Ballgown output by R (why q value are same in result ? )
R ballgown differential expression (de) analysis written 8 months ago by amitunited0532 • 10 • updated 8 months ago by ATpoint ♦ 17k
0
votes
0
answers
401
views
0
answers
Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
assembly ballgown rna-seq igv written 8 months ago by iraia.munoa • 60 • updated 8 months ago by RamRS ♦ 21k
2
votes
1
answer
690
views
1
answer
FPKM matrix after stringtie using ballgown
stringtie ballgown fpkm rna-seq written 9 months ago by Vasu • 330 • updated 9 months ago by Adrian Pelin • 2.3k
0
votes
1
answer
399
views
1
answer
Outputing gexpr() with gene_name (or gene symbol) instead of MSTRG.x gene_id
ballgown stringtie rna-seq gene_name written 10 months ago by ever_wudi • 10
5
votes
1
answer
1.8k
views
1
answer
Stringtie prepDE.py Error line 32
stringtie deseq2 ballgown rna-seq prepde.py written 14 months ago by bryce.kirby • 0 • updated 12 months ago by Biostar ♦♦ 20
0
votes
1
answer
896
views
1
answer
Code for DEG analysis using Ballgown
ballgown stattest ngs rna-seq written 15 months ago by Arindam Ghosh • 160 • updated 14 months ago by Vijay Lakhujani ♦ 4.1k
0
votes
0
answers
569
views
0
answers
What measure should be used to calculate fold-change while using Ballgown to compare D.E genes between 2 conditions?
ballgown stringtie rna-seq hisat2 written 15 months ago by nancy • 70
1
vote
0
answers
461
views
0
answers
specification of linear model and log transformation in ballgown
package function R ballgown rna-seq written 17 months ago by amy16 • 40
0
votes
0
answers
322
views
0
answers
ballgownrsem function usage details
ballgown tuxedo rna-seq dge written 17 months ago by amy16 • 40
2
votes
0
answers
731
views
0
answers
Error in reading ballgown object
R ballgown rna-seq written 17 months ago by amy16 • 40 • updated 17 months ago by WouterDeCoster ♦ 39k
0
votes
0
answers
1.5k
views
0
answers
Error in file(file, "rt") : invalid 'description' argument
R ballgown rna-seq written 17 months ago by amy16 • 40 • updated 17 months ago by Kevin Blighe ♦ 43k
2
votes
0
answers
514
views
0
answers
syntax error in R when run on HPC
R ballgown rna-seq written 17 months ago by amy16 • 40
1
vote
1
answer
547
views
1
answer
Differential gene expression anaylsis -Ballgown
ballgown stringtie rna-seq written 17 months ago by amy16 • 40 • updated 17 months ago by Hussain Ather • 920
2
votes
1
answer
820
views
1
answer
Ballgown library load
ballgown rna-seq written 18 months ago by amy16 • 40 • updated 18 months ago by h.mon ♦ 25k
2
votes
0
answers
1.0k
views
0
answers
stringtie + ballgown for multivariate analysis of rna-seq data
stringtie ballgown rna-seq multivariate written 18 months ago by nancy • 70
2
votes
0
answers
496
views
0
answers
Differential gene expression
ballgown tuxedo rna-seq written 18 months ago by amy16 • 40 • updated 18 months ago by RamRS ♦ 21k
1
vote
0
answers
585
views
0
answers
Stringtie output for DGE
stringtie ballgown written 19 months ago by amy16 • 40
0
votes
0
answers
759
views
0
answers
Adding gene names to ballgown object gexpr(bg)
ballgown rna-seq written 19 months ago by maria.traka • 20
0
votes
0
answers
2.4k
views
0
answers
Ballgown Error in file(file, "rt") : invalid 'description' argument
ballgown rna-seq written 21 months ago by vinayjrao • 120
0
votes
0
answers
1.4k
views
0
answers
stringtie (.gtf) vs ballgown (t_data.ctab) FPKM values do not match - why?
stringtie ballgown fpkm rna-seq written 24 months ago by cpak1981 • 100
1
vote
0
answers
1.9k
views
0
answers
Error encountered while running stattest from ballgown package
ballgown stattest bioconductor rna-seq written 2.1 years ago by Vijay Lakhujani ♦ 4.1k
<prev • 33 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, 5 minutes ago
  • Houston, TX, 8 minutes ago
  • Republic of Ireland, 24 minutes ago
  • United States, 30 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 572 users visited in the last hour