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2
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124
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Problem in analysis of Ballgown output by R (why q value are same in result ? )
R ballgown differential expression (de) analysis written 19 days ago by amitunited0532 • 10 • updated 19 days ago by ATpoint ♦ 8.0k
0
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119
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Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
assembly ballgown rna-seq igv written 25 days ago by iraia.munoa • 10 • updated 25 days ago by RamRS ♦ 18k
2
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1
answer
168
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1
answer
FPKM matrix after stringtie using ballgown
stringtie ballgown fpkm rna-seq written 7 weeks ago by Bioinfo • 270 • updated 7 weeks ago by Adrian Pelin • 2.2k
0
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1
answer
149
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1
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Outputing gexpr() with gene_name (or gene symbol) instead of MSTRG.x gene_id
ballgown stringtie rna-seq gene_name written 10 weeks ago by ever_wudi • 10
7
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1
answer
331
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1
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Ballgown finds few DE genes compared to DESeq
ballgown deseq2 rna-seq written 3 months ago by corend • 70
5
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1
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783
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1
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Stringtie prepDE.py Error line 32
stringtie deseq2 ballgown rna-seq prepde.py written 6 months ago by bryce.kirby • 0 • updated 4 months ago by Biostar ♦♦ 20
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1
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412
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1
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Code for DEG analysis using Ballgown
ballgown stattest ngs rna-seq written 7 months ago by ag1805x • 90 • updated 6 months ago by Vijay Lakhujani ♦ 3.1k
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327
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What measure should be used to calculate fold-change while using Ballgown to compare D.E genes between 2 conditions?
ballgown stringtie rna-seq hisat2 written 7 months ago by nancy • 60
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322
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specification of linear model and log transformation in ballgown
package function R ballgown rna-seq written 9 months ago by amy16 • 30
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205
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ballgownrsem function usage details
ballgown tuxedo rna-seq dge written 9 months ago by amy16 • 30
2
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462
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Error in reading ballgown object
R ballgown rna-seq written 9 months ago by amy16 • 30 • updated 9 months ago by WouterDeCoster ♦ 32k
0
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734
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Error in file(file, "rt") : invalid 'description' argument
R ballgown rna-seq written 9 months ago by amy16 • 30 • updated 9 months ago by Kevin Blighe ♦ 30k
2
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283
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syntax error in R when run on HPC
R ballgown rna-seq written 9 months ago by amy16 • 30
1
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1
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370
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1
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Differential gene expression anaylsis -Ballgown
ballgown stringtie rna-seq written 9 months ago by amy16 • 30 • updated 9 months ago by Hussain Ather • 880
2
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1
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565
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1
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Ballgown library load
ballgown rna-seq written 10 months ago by amy16 • 30 • updated 10 months ago by h.mon ♦ 20k
2
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0
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655
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0
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stringtie + ballgown for multivariate analysis of rna-seq data
stringtie ballgown rna-seq multivariate written 10 months ago by nancy • 60
2
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0
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372
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Differential gene expression
ballgown tuxedo rna-seq written 10 months ago by amy16 • 30 • updated 10 months ago by RamRS ♦ 18k
1
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0
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415
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0
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Stringtie output for DGE
stringtie ballgown written 11 months ago by amy16 • 30
0
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0
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482
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0
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Adding gene names to ballgown object gexpr(bg)
ballgown rna-seq written 11 months ago by maria.traka • 20
0
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1.5k
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Ballgown Error in file(file, "rt") : invalid 'description' argument
ballgown rna-seq written 13 months ago by vinayjrao • 100
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1.0k
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stringtie (.gtf) vs ballgown (t_data.ctab) FPKM values do not match - why?
stringtie ballgown fpkm rna-seq written 16 months ago by cpak1981 • 100
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1.3k
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Error encountered while running stattest from ballgown package
ballgown stattest bioconductor rna-seq written 17 months ago by Vijay Lakhujani ♦ 3.1k
15
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4
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5.1k
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4
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Gene names in Ballgown differential expression analysis
ballgown rna-seq written 24 months ago by Albert • 140 • updated 18 months ago by mcalleja • 50
1
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1
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1.2k
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1
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How do you find ballgown package for differential expression analysis?
ballgown differential expression written 20 months ago by seta • 1.0k
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1.4k
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Ballgown plotTranscripts function
R ballgown trancript rna-seq plot written 2.7 years ago by Matina • 150
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