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Ballgown Error in file(file, "rt") : invalid 'description' argument
ballgown rna-seq written 2.1 years ago by vinayjrao • 140 • updated 4 weeks ago by wood • 0
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180
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ballgown and pData
ballgown rna-seq written 10 weeks ago by Morris_Chair • 120
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273
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Ballgown for visualization of gene expression
ballgown covariate written 5 months ago by dzo.ilic.i • 0 • updated 3 months ago by Biostar ♦♦ 20
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300
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Isoform level differential expression
stringtie ballgown rna-seq written 5 months ago by rnaseql • 0
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hisat2-stringtie-ballgown pipeline gives high p-value and q-value for RNA-seq of Arabidopsis thaliana
ballgown arabidopsis stringtie rna-seq hisat2 written 6 months ago by tiancaigg • 0
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280
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How to add a specific column from related table
R bioconductor ballgown rna-seq written 6 months ago by Redse • 30
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rowVars function, used in ballgown analysis not available for R 3.5.2, alternatives?
R ballgown rna-seq rowvars written 6 months ago by RNAseqer • 110 • updated 6 months ago by kristoffer.vittingseerup • 2.3k
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ballgown error: Error in file(file, "rt") : invalid 'description' argument Calls: ballgown -> read.table -> file
ballgown stringtie rna-seq written 6 months ago by RNAseqer • 110
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397
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ballgown has "." as Gene Names
assembly ballgown rna-seq written 8 months ago by Fawzi Yassine • 10
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Error while loading the data structrure in the ballgown tool
new tuxedo pipeline ballgown rna-seq written 10 months ago by swarajgaikwad15 • 0 • updated 10 months ago by lakhujanivijay ♦ 4.4k
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Ballgown finds few DE genes compared to DESeq
ballgown deseq2 rna-seq written 14 months ago by corend • 70 • updated 11 months ago by shenwei1376 • 0
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Problem in analysis of Ballgown output by R (why q value are same in result ? )
R ballgown differential expression (de) analysis written 11 months ago by amitunited0532 • 10 • updated 11 months ago by ATpoint ♦ 23k
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Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
assembly ballgown rna-seq igv written 12 months ago by iraia.munoa • 70 • updated 12 months ago by RamRS ♦ 24k
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FPKM matrix after stringtie using ballgown
stringtie ballgown fpkm rna-seq written 12 months ago by Vasu • 370 • updated 12 months ago by Adrian Pelin • 2.3k
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485
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Outputing gexpr() with gene_name (or gene symbol) instead of MSTRG.x gene_id
ballgown stringtie rna-seq gene_name written 13 months ago by ever_wudi • 10
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Stringtie prepDE.py Error line 32
stringtie deseq2 ballgown rna-seq prepde.py written 17 months ago by bryce.kirby • 0 • updated 16 months ago by Biostar ♦♦ 20
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Code for DEG analysis using Ballgown
ballgown stattest ngs rna-seq written 18 months ago by Arindam Ghosh • 170 • updated 17 months ago by lakhujanivijay ♦ 4.4k
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What measure should be used to calculate fold-change while using Ballgown to compare D.E genes between 2 conditions?
ballgown stringtie rna-seq hisat2 written 18 months ago by nancy • 70
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520
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specification of linear model and log transformation in ballgown
package function R ballgown rna-seq written 20 months ago by amy16 • 40
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ballgownrsem function usage details
ballgown tuxedo rna-seq dge written 20 months ago by amy16 • 40
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Error in reading ballgown object
R ballgown rna-seq written 20 months ago by amy16 • 40 • updated 20 months ago by WouterDeCoster ♦ 40k
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Error in file(file, "rt") : invalid 'description' argument
R ballgown rna-seq written 20 months ago by amy16 • 40 • updated 20 months ago by Kevin Blighe ♦ 48k
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syntax error in R when run on HPC
R ballgown rna-seq written 20 months ago by amy16 • 40
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Differential gene expression anaylsis -Ballgown
ballgown stringtie rna-seq written 20 months ago by amy16 • 40 • updated 20 months ago by Hussain Ather • 940
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Ballgown library load
ballgown rna-seq written 21 months ago by amy16 • 40 • updated 21 months ago by h.mon ♦ 27k
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stringtie + ballgown for multivariate analysis of rna-seq data
stringtie ballgown rna-seq multivariate written 22 months ago by nancy • 70
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Differential gene expression
ballgown tuxedo rna-seq written 22 months ago by amy16 • 40 • updated 22 months ago by RamRS ♦ 24k
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Stringtie output for DGE
stringtie ballgown written 22 months ago by amy16 • 40
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Adding gene names to ballgown object gexpr(bg)
ballgown rna-seq written 22 months ago by maria.traka • 20
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stringtie (.gtf) vs ballgown (t_data.ctab) FPKM values do not match - why?
stringtie ballgown fpkm rna-seq written 2.2 years ago by cpak1981 • 100
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