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2
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1
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700
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5 follow
1
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ballgown has "." as Gene Names
assembly ballgown rna-seq written 16 months ago by Fawzi Yassine • 10 • updated 10 weeks ago by Sissi • 50
2
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1
answer
321
views
1
answer
What is MSTRG?
stringtie mstrg ballgown rna-seq hisat2 written 4 months ago by arabi • 10
1
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0
answers
217
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0
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How to make Heatmap about DEG?
ballgown rna-seq deg heatmap written 4 months ago by arabi • 10
1
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0
answers
755
views
0
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Stringtie output for DGE
stringtie ballgown written 2.5 years ago by amy16 • 40 • updated 5 months ago by Biostar ♦♦ 20
1
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0
answers
309
views
0
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Invalid covariate name
R ballgown rna-seq written 6 months ago by mark.pekarsky • 20 • updated 6 months ago by Biostar ♦♦ 20
0
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1
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3.9k
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6 follow
1
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Ballgown Error in file(file, "rt") : invalid 'description' argument
ballgown rna-seq written 2.8 years ago by vinayjrao • 170 • updated 9 months ago by wood • 0
1
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0
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356
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0
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ballgown and pData
ballgown rna-seq written 11 months ago by Morris_Chair • 180
0
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0
answers
429
views
0
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Ballgown for visualization of gene expression
ballgown covariate written 14 months ago by dzo.ilic.i • 0 • updated 12 months ago by Biostar ♦♦ 20
1
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0
answers
582
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0
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Isoform level differential expression
stringtie ballgown rna-seq written 13 months ago by rnaseql • 0
0
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0
answers
901
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0
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hisat2-stringtie-ballgown pipeline gives high p-value and q-value for RNA-seq of Arabidopsis thaliana
ballgown arabidopsis stringtie rna-seq hisat2 written 14 months ago by tiancaigg • 0
1
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0
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414
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0
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How to add a specific column from related table
R bioconductor ballgown rna-seq written 15 months ago by Redse • 30
11
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2
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1.3k
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5 follow
2
answers
rowVars function, used in ballgown analysis not available for R 3.5.2, alternatives?
R ballgown rna-seq rowvars written 15 months ago by RNAseqer • 130 • updated 15 months ago by kristoffer.vittingseerup • 3.2k
0
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0
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840
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0
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ballgown error: Error in file(file, "rt") : invalid 'description' argument Calls: ballgown -> read.table -> file
ballgown stringtie rna-seq written 15 months ago by RNAseqer • 130
7
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1
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1.2k
views
1
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Error while loading the data structrure in the ballgown tool
new tuxedo pipeline ballgown rna-seq written 18 months ago by swarajgaikwad15 • 0 • updated 18 months ago by lakhujanivijay ♦ 5.0k
8
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1
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1.7k
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5 follow
1
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Ballgown finds few DE genes compared to DESeq
ballgown deseq2 rna-seq written 23 months ago by corend • 70 • updated 19 months ago by shenwei1376 • 0
2
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0
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857
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0
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Problem in analysis of Ballgown output by R (why q value are same in result ? )
R ballgown differential expression (de) analysis written 20 months ago by amitunited0532 • 30 • updated 20 months ago by ATpoint ♦ 34k
0
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0
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761
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0
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Different results when visualizing tdf files in IGV and when doing the differential expression analysis with ballgown
assembly ballgown rna-seq igv written 20 months ago by iraia.munoa • 90 • updated 20 months ago by RamRS ♦ 27k
2
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1
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1.4k
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1
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FPKM matrix after stringtie using ballgown
stringtie ballgown fpkm rna-seq written 21 months ago by Vasu • 430 • updated 21 months ago by Adrian Pelin • 2.4k
0
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1
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713
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1
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Outputing gexpr() with gene_name (or gene symbol) instead of MSTRG.x gene_id
ballgown stringtie rna-seq gene_name written 22 months ago by ever_wudi • 10
5
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1
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3.3k
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1
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Stringtie prepDE.py Error line 32
stringtie deseq2 ballgown rna-seq prepde.py written 2.2 years ago by bryce.kirby • 0 • updated 2.0 years ago by Biostar ♦♦ 20
0
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1
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1.5k
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1
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Code for DEG analysis using Ballgown
ballgown stattest ngs rna-seq written 2.2 years ago by Arindam Ghosh • 250 • updated 2.1 years ago by lakhujanivijay ♦ 5.0k
0
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0
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809
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0
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What measure should be used to calculate fold-change while using Ballgown to compare D.E genes between 2 conditions?
ballgown stringtie rna-seq hisat2 written 2.2 years ago by nancy • 80
1
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0
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680
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0
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specification of linear model and log transformation in ballgown
package function R ballgown rna-seq written 2.4 years ago by amy16 • 40
0
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0
answers
444
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0
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ballgownrsem function usage details
ballgown tuxedo rna-seq dge written 2.4 years ago by amy16 • 40
2
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0
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1.0k
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0
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Error in reading ballgown object
R ballgown rna-seq written 2.4 years ago by amy16 • 40 • updated 2.4 years ago by WouterDeCoster ♦ 43k
0
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0
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3.2k
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0
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Error in file(file, "rt") : invalid 'description' argument
R ballgown rna-seq written 2.4 years ago by amy16 • 40 • updated 2.4 years ago by Kevin Blighe ♦ 60k
2
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0
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867
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0
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syntax error in R when run on HPC
R ballgown rna-seq written 2.4 years ago by amy16 • 40
1
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1
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697
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1
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Differential gene expression anaylsis -Ballgown
ballgown stringtie rna-seq written 2.4 years ago by amy16 • 40 • updated 2.4 years ago by Hussain Ather • 940
2
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1
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1.1k
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1
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Ballgown library load
ballgown rna-seq written 2.5 years ago by amy16 • 40 • updated 2.5 years ago by h.mon ♦ 29k
2
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0
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1.4k
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0
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stringtie + ballgown for multivariate analysis of rna-seq data
stringtie ballgown rna-seq multivariate written 2.5 years ago by nancy • 80
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