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<prev • 22 results • page 1 of 1 • next >
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Outputing gexpr() with gene_name (or gene symbol) instead of MSTRG.x gene_id
ballgown stringtie rna-seq gene_name written 14 days ago by ever_wudi • 10
7
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1
answer
184
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1
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Ballgown finds few DE genes compared to DESeq
ballgown deseq2 rna-seq written 6 weeks ago by corend • 40
5
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1
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496
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1
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Stringtie prepDE.py Error line 32
stringtie deseq2 ballgown rna-seq prepde.py written 4 months ago by bryce.kirby • 0 • updated 3 months ago by Biostar ♦♦ 20
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1
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298
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1
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Code for DEG analysis using Ballgown
ballgown stattest ngs rna-seq written 5 months ago by ag1805x • 90 • updated 4 months ago by Vijay Lakhujani ♦ 3.0k
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242
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What measure should be used to calculate fold-change while using Ballgown to compare D.E genes between 2 conditions?
ballgown stringtie rna-seq hisat2 written 5 months ago by nancy • 60
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280
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specification of linear model and log transformation in ballgown
package function R ballgown rna-seq written 7 months ago by amy16 • 30
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168
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ballgownrsem function usage details
ballgown tuxedo rna-seq dge written 7 months ago by amy16 • 30
2
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386
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Error in reading ballgown object
R ballgown rna-seq written 7 months ago by amy16 • 30 • updated 7 months ago by WouterDeCoster ♦ 31k
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480
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Error in file(file, "rt") : invalid 'description' argument
R ballgown rna-seq written 7 months ago by amy16 • 30 • updated 7 months ago by Kevin Blighe ♦ 26k
2
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0
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240
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syntax error in R when run on HPC
R ballgown rna-seq written 7 months ago by amy16 • 30
1
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1
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317
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1
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Differential gene expression anaylsis -Ballgown
ballgown stringtie rna-seq written 7 months ago by amy16 • 30 • updated 7 months ago by Hussain Ather • 880
2
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1
answer
484
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1
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Ballgown library load
ballgown rna-seq written 8 months ago by amy16 • 30 • updated 8 months ago by h.mon ♦ 18k
2
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0
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570
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0
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stringtie + ballgown for multivariate analysis of rna-seq data
stringtie ballgown rna-seq multivariate written 8 months ago by nancy • 60
2
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0
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332
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Differential gene expression
ballgown tuxedo rna-seq written 8 months ago by amy16 • 30 • updated 8 months ago by Ram ♦ 17k
1
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375
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Stringtie output for DGE
stringtie ballgown written 9 months ago by amy16 • 30
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0
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394
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0
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Adding gene names to ballgown object gexpr(bg)
ballgown rna-seq written 9 months ago by maria.traka • 20
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1.3k
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0
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Ballgown Error in file(file, "rt") : invalid 'description' argument
ballgown rna-seq written 11 months ago by vinayjrao • 100
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stringtie (.gtf) vs ballgown (t_data.ctab) FPKM values do not match - why?
stringtie ballgown fpkm rna-seq written 14 months ago by cpak1981 • 100
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1.1k
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Error encountered while running stattest from ballgown package
ballgown stattest bioconductor rna-seq written 16 months ago by Vijay Lakhujani ♦ 3.0k
13
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4
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4.6k
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4
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Gene names in Ballgown differential expression analysis
ballgown rna-seq written 22 months ago by Albert • 130 • updated 16 months ago by mcalleja • 40
1
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1
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1
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How do you find ballgown package for differential expression analysis?
ballgown differential expression written 18 months ago by seta • 1000
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Ballgown plotTranscripts function
R ballgown trancript rna-seq plot written 2.5 years ago by Matina • 150
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