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Samtools merge Illumina and PB bam file empty
illumina samtools merge pacbio bam file written 9 weeks ago by talbots0 • updated 9 weeks ago by h.mon31k
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Read count per exon per transcript
dexseq read count rna-seq bam file written 5.6 years ago by wan.fahmi0 • updated 3 months ago by Biostar ♦♦ 20
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How to run ABSOLUTE with WGS bam files ?
absolute next-gen matched normal tumor bam file written 4.4 years ago by subhajit06110 • updated 7 months ago by roseluosy0
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What are "unused reference sequences" in a bam file?
sam file bam samtools sam bam file written 13 months ago by anniejeanforster0 • updated 13 months ago by ATpoint40k
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How to get regions with mapped reads
bedtools bed file rna-seq bam file written 2.0 years ago by nanoide50 • updated 2.0 years ago by RamRS30k
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Uniquely mapped PAIRS of reads
paired end reads samtools bam file written 4.4 years ago by abascalfederico1.1k • updated 4.4 years ago by Devon Ryan97k
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Very low mapping rate of a bam file, reasons?
flagstats next-gen alignment bam file written 4.5 years ago by nidoo.beg20 • updated 4.5 years ago by Antonio R. Franco4.5k
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Phred Score/Base quality score in Pysam
bam file phred alignment pysam sequencing written 5.1 years ago by Lylthera0 • updated 5.1 years ago by glihm620
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Fix SAM flags on quality filtered paired-end BAM file
sam flag paired-end read bam file written 5.3 years ago by le233670 • updated 5.3 years ago by James Ashmore3.0k
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bam file readgroup to include several individuals
readgroup split bam files bam file written 5.9 years ago by P.NJ50 • updated 5.9 years ago by Devon Ryan97k
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Samtools problems with length and position
length mate strand sequence samtools bam file written 6.1 years ago by dahliashvets10 • updated 6.1 years ago by Ashutosh Pandey12k
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How to compute MAPQ distribution with Rsamtools
mapq rsamtools bam file written 6.5 years ago by Nicola Casiraghi450 • updated 6.5 years ago by Devon Ryan97k
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