Showing: bam filereset
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How to get regions with mapped reads
bedtools bed file rna-seq bam file written 9 weeks ago by nanoide10 • updated 9 weeks ago by RamRS19k
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5 follow
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3
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Uniquely mapped PAIRS of reads
paired end reads samtools bam file written 2.5 years ago by abascalfederico1.0k • updated 2.5 years ago by Devon Ryan86k
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How to run ABSOLUTE with WGS bam files ?
absolute next-gen matched normal tumor bam file written 2.6 years ago by subhajit06110 • updated 2.6 years ago by purplerainf0
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Very low mapping rate of a bam file, reasons?
flagstats next-gen alignment bam file written 2.6 years ago by nidoo.beg20 • updated 2.6 years ago by Antonio R. Franco3.9k
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1
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1
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Phred Score/Base quality score in Pysam
bam file phred alignment pysam sequencing written 3.2 years ago by Lylthera0 • updated 3.2 years ago by glihm580
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Fix SAM flags on quality filtered paired-end BAM file
sam flag paired-end read bam file written 3.5 years ago by le233660 • updated 3.5 years ago by James Ashmore2.5k
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Read count per exon per transcript
dexseq read count rna-seq bam file written 3.8 years ago by wan.fahmi0 • updated 3.8 years ago by geek_y8.8k
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bam file readgroup to include several individuals
readgroup split bam files bam file written 4.1 years ago by P.NJ50 • updated 4.1 years ago by Devon Ryan86k
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Samtools problems with length and position
length mate strand sequence samtools bam file written 4.3 years ago by dahliashvets10 • updated 4.3 years ago by Ashutosh Pandey11k
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1
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How to compute MAPQ distribution with Rsamtools
mapq rsamtools bam file written 4.7 years ago by Nicola Casiraghi440 • updated 4.7 years ago by Devon Ryan86k
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