Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: bam • reset
or   Classic search
<prev • 1,185 results • page 1 of 40 • next >
1
vote
0
answers
91
views
0
answers
Using Rsamtools to input BAM files
bam rsamtools written 5 days ago by Nathalia Scheltinga • 0 • updated 28 minutes ago by Biostar ♦♦ 20
4
votes
1
answer
88
views
1
answer
Extracting reads mapping to CDS regions but not the first 45bp after ATG
bed bam rna-seq written 5 days ago by Adrian Pelin • 2.3k • updated 5 days ago by Pierre Lindenbaum ♦ 122k
2
votes
2
answers
6.8k
views
2
answers
How To Extract Reads With Wrong Insert Size With Samtools
bam samtools awk written 6.8 years ago by Assa Yeroslaviz • 1.2k • updated 7 days ago by Biostar ♦♦ 20
2
votes
1
answer
99
views
1
answer
BAM File size increased after extracting unique reads
alignment samtools star bam uniuque mapping written 8 days ago by ilovesuperheroes1993 • 0 • updated 8 days ago by michael.ante • 3.3k
1
vote
0
answers
80
views
0
answers
BAM files just say "sample_ID"
bam samtools snp written 16 days ago by marcus.hooker • 0
0
votes
0
answers
188
views
0
answers
Problem with Bio-Tradis tool, help
bio-tradis tradis transposon alignment bam written 6 months ago by Lil Potato • 0 • updated 16 days ago by gm434 • 0
3
votes
1
answer
134
views
1
answer
From per bp coverage to average coverage in 10bp intervals
genome dna-seq bam written 17 days ago by Adrian Pelin • 2.3k • updated 17 days ago by Alex Reynolds ♦ 28k
1
vote
1
answer
75
views
1
answer
Calculating effective coverage/callable genome for variant calling from a bam file
genome variant-calling bam bigwig coverage written 19 days ago by Rubal • 240 • updated 19 days ago by Pierre Lindenbaum ♦ 122k
0
votes
2
answers
2.4k
views
2
answers
output of bedtools bamtofastq are empty files
bamtofastq bedtools fastq bam samtools written 4.3 years ago by szuszmok • 40 • updated 21 days ago by gohchengang1994 • 0
0
votes
1
answer
124
views
1
answer
Pysam not finding mapped reads in BAM file
chip-seq bam samtools pysam written 22 days ago by taraeicher • 10
2
votes
1
answer
115
views
1
answer
Extract only RNA-seq reads in a BAM file that extend into an intron
bedtools alignment samtools rna-seq bam written 25 days ago by foxdie • 10
0
votes
0
answers
63
views
0
answers
How to get an exact match from the bam alignment file
bam samtools bwa written 28 days ago by xiaoguang • 10
1
vote
1
answer
318
views
6 follow
1
answer
Fastq to BAM
fastq bam written 10 weeks ago by zliew • 0 • updated 4 weeks ago by Biostar ♦♦ 20
3
votes
2
answers
281
views
6 follow
2
answers
scRNAseq: Split FASTQ into cell specific FASTQ Files
cell ranger bam rna-seq split demultiplex written 3 months ago by niklas.lang • 0 • updated 4 weeks ago by igor ♦ 8.1k
13
votes
3
answers
217
views
6 follow
3
answers
Is it possible to directly convert fastq to CRAM ?
fastq bam cram storage written 4 weeks ago by lakhujanivijay ♦ 4.3k
1
vote
1
answer
243
views
1
answer
Issue With CRAM -> BAM -> FASTQ Conversion
samtools fastq bam cram view written 5 weeks ago by Denis.keimakh • 0 • updated 4 weeks ago by jkbonfield • 150
6
votes
1
answer
192
views
6 follow
1
answer
extract unique sequences on bam file
R sequence align bam written 4 weeks ago by SeaStar • 10
1
vote
1
answer
92
views
1
answer
BWA index getting killed
fastq bam bwa index written 4 weeks ago by abbysue • 10 • updated 4 weeks ago by swbarnes2 ♦ 6.1k
0
votes
2
answers
672
views
2
answers
csaw - Htslib import errors and missing reads/chromosomes
csaw bam chip-seq atac-seq library written 13 months ago by reskejak • 10 • updated 4 weeks ago by xuzhougeng • 0
0
votes
0
answers
92
views
0
answers
Import a BAM file into SMRT Link
xml smrt link pacbio bam written 6 weeks ago by a.vincent.0312 • 0
0
votes
1
answer
92
views
1
answer
How to get the number of reads for a set of coordinates from a bam file.
ngs bam written 6 weeks ago by hins.2026 • 0 • updated 6 weeks ago by ATpoint ♦ 21k
0
votes
2
answers
107
views
2
answers
targets in a bed at or above a coverage
bedfile bam 250x written 6 weeks ago by bioguy24 • 190 • updated 6 weeks ago by harold.smith.tarheel • 4.4k
0
votes
0
answers
135
views
0
answers
Stringtie --merge with PE and SE files
assembly bam written 6 weeks ago by marina.v.yurieva • 480
0
votes
1
answer
109
views
1
answer
ref and alt allele count from BAM file
bam allele_count rna-seq written 7 weeks ago by monaallouba • 0 • updated 7 weeks ago by Vitis • 2.2k
1
vote
1
answer
148
views
1
answer
Changing chromosome format in bam
picard samtools bam written 7 weeks ago by srhic • 0 • updated 7 weeks ago by lakhujanivijay ♦ 4.3k
1
vote
0
answers
144
views
0
answers
Remove duplicate reads in single cell bam file
bam atac seq single cell written 7 weeks ago by emre.cto • 0
2
votes
2
answers
148
views
2
answers
Having trouble with samtools cat
bam samtools sam written 8 weeks ago by matthew.dambrosio.1 • 0 • updated 8 weeks ago by John Marshall ♦ 1.7k
0
votes
0
answers
175
views
0
answers
IGV Web App inside Flask Server
flask alignment bam igv written 8 weeks ago by milind_ag • 10
1
vote
0
answers
147
views
0
answers
Annotate counts region by region
bam chip-seq written 8 weeks ago by elb • 160
8
votes
4
answers
9.4k
views
9 follow
4
answers
How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
reads gff exon sam bam written 6.2 years ago by lwc628 • 200 • updated 8 weeks ago by m13113153781 • 0
<prev • 1,185 results • page 1 of 40 • next >
Recent Votes
Recent Locations • All »
  • Center for Geogenetik Københavns Universitet, just now
  • Belgium, Brussels, 2 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1581 users visited in the last hour