Showing: bamreset
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SAM to BAM conversion error
genome alignment samtools bwa bam written 4 hours ago by jitendoshi20060 • updated 3 hours ago by Pierre Lindenbaum92k
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50
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5
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bam file calculate sliding window insert sizes
insert size bam written 3 days ago by 141341254653464453.2k • updated 3 days ago by Devon Ryan64k
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1
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145
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81
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How to extract high coverage region from BAM?
reads ngs bam coverage mapping written 6 days ago by BioGeek60 • updated 6 days ago by Pierre Lindenbaum92k
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104
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Finding total number of reads from BAM file
next-gen alignment rna-seq bam written 7 days ago by ilana.sychikov20 • updated 7 days ago by Antonio R. Franco3.3k
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4
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Tool: pybam - 100% python BAM reader
htspython python bam pysam tool written 12 months ago by John11k
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5
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12k
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10 follow
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How Can I Know The Length Of Mapped Reads From Bam File?
bam mapping written 4.2 years ago by Jordan1000 • updated 7 days ago by doyourun80
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1
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107
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1
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BAM to FASTA
fasta bam to fasta bam samtools written 8 days ago by ivamoresq0 • updated 8 days ago by WouterDeCoster16k
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77
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1
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Number of sequenced positions from a BAM file
bam samtools rna-seq written 8 days ago by rubic120 • updated 8 days ago by Devon Ryan64k
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149
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78
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6
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154
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Downsample BAM file
bam downsample filtering written 20 days ago by F.R.20 • updated 20 days ago by Pierre Lindenbaum92k
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1
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97
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1
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Understanding Picards HsMetrics
picardtools bam sam written 21 days ago by finswimmer77120 • updated 21 days ago by Pierre Lindenbaum92k
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5
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19 follow
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Is My Bam File Sorted ?
sequencing next-gen bam sort written 6.2 years ago by Pierre Lindenbaum92k • updated 21 days ago by martin.triska10
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315
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Trouble with bedtools groupby - not summarizing by columns
bedtools groupby bam sort written 4 months ago by yarmda0 • updated 22 days ago by chycheng20120
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86
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1
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compute coverage with file.bam and bed : bedtools empty output
bedtools bed bam coverage written 24 days ago by noeD50 • updated 24 days ago by Devon Ryan64k
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2
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210
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6 follow
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filtering out reads from bam file
gff3 filter bam rna-seq written 4 weeks ago by sgmiriuka0 • updated 25 days ago by Alex Reynolds18k
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225
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Trim Reads From BAM files
bamutil bam trim written 8 weeks ago by fusion.slope110 • updated 27 days ago by Biostar ♦♦ 10
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107
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Base call from BAM file
vcf bam written 29 days ago by F.R.20
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114
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1
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122
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bam to fasta error using samtools
bam fa written 5 weeks ago by christacaggiano10 • updated 5 weeks ago by Ram11k
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108
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1
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How to remove Read Name (1st column) extension from a BAM file?
paired-end bam written 5 weeks ago by irinkish10 • updated 5 weeks ago by Pierre Lindenbaum92k
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187
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5 follow
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124
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Question about MD tag in BAM file
bam md written 6 weeks ago by abascalfederico860
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140
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13
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187
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5 follow
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Error of bam-to-sam conversion using samtools
tophat2 samtools sam rna-seq bam written 6 weeks ago by Gary370 • updated 6 weeks ago by genomax226k
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166
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Extract the mapped contig sequences from SAM/BAM file
bam samtools sam bwa written 7 weeks ago by sbdk8230 • updated 6 weeks ago by haro70
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1
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892
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1
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Detecting Variants near repeats
vcf repeats bam freebayes written 2.9 years ago by Adrian Pelin1.9k • updated 7 weeks ago by Macspider970
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