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<prev • 1,227 results • page 1 of 41 • next >
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Rename Tag in BAM file
bam written 1 day ago by i.sudbery ♦ 6.3k • updated 1 day ago by Pierre Lindenbaum ♦ 124k
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1
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56
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1
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"Error in splitted_reads[[1]] : subscript out of bounds"
nipter bam written 5 days ago by ignizamutdinov • 0 • updated 5 days ago by ATpoint ♦ 25k
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38
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Finding number of reads and base calls at ~10,000 non-SNPs using BAM file?
bam ancientdna written 6 days ago by devenvyas • 600
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1
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49
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1
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Clipping reads within BAM files?
bam written 6 days ago by devenvyas • 600 • updated 6 days ago by manuel.belmadani • 1.1k
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0
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71
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Counting abundance of each gene in SAM/BAM file
gene bam samtools sam abundance written 9 days ago by Hansen_869 • 10
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74
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Failure in extracting reads from bam file due to unknown reference
extraction alignment reference bam written 9 days ago by marongiu.luigi • 420
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68
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suppress pysam index warnings.
python bam pysam written 11 days ago by b10hazard • 20 • updated 11 days ago by John Marshall ♦ 1.8k
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55
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bcftools mpileup with --region option output wrong consequence
bam bcftools mpileup snp written 11 days ago by SSK • 0
5
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1
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98
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1
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Sampling random reads from BAM files with allowing same reads
reads bam samtools random_sampling written 12 days ago by SSK • 0 • updated 12 days ago by benformatics • 1.2k
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1
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138
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1
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Missing SNPs in sequencing.com from BAM file
missing bam snp sequencing written 29 days ago by imbiling • 0 • updated 16 days ago by Amar • 440
2
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1
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85
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1
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how to visualize rna-seq coverage track in igv?
normalization bam coverage rna-seq igv written 17 days ago by Zee_S • 50 • updated 17 days ago by jared.andrews07 • 3.9k
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0
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349
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Twist Bioscience BAM example
data twist bam capture written 17 months ago by sacha • 1.8k • updated 17 days ago by Biostar ♦♦ 20
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1
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94
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1
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exon-intron reads in neuron samples
alignment sam rna-seq bam written 19 days ago by rgescudero • 30 • updated 19 days ago by geek_y ♦ 10.0k
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1
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67
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1
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Mapping quality score of clipped reads
python bam pysam written 19 days ago by radwa.raed • 10 • updated 19 days ago by swbarnes2 ♦ 7.0k
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8
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191 follow
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 5.2 years ago by Obi Griffith ♦ 18k • updated 19 days ago by yousefifariba6 • 0
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0
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111
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Interpreting bam-files from Prokka annotation
bam samtools prokka bwa written 23 days ago by Hansen_869 • 10
5
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1
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137
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1
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How to get chrM chr1 ...chr22 chrX chrY order in my bam file
gatk picard snp bam sort written 24 days ago by Ada • 0 • updated 23 days ago by jkbonfield • 200
3
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1
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128
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1
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BWA not reporting all similar alignments
alignment next-gen bwa bam written 24 days ago by Chadi Saad • 60
11
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3
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253
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5 follow
3
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How to introduce artificial mutation in bam
bam mismatch written 25 days ago by bassanio • 20 • updated 25 days ago by h.mon ♦ 28k
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78
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help with exome analysis_only bam file
exome next-gen bam written 4 weeks ago by munta.jihad • 0
0
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1
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164
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1
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Calculate the area covered more than a certain depth
next-gen coverage bam sequencing written 5 weeks ago by Floydian_slip • 130 • updated 4 weeks ago by yztxwd • 170
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1
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95
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1
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How to subset bamfile based on chromosome IDs
bam freebayes subset written 5 weeks ago by mernster • 0 • updated 5 weeks ago by ATpoint ♦ 25k
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1
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642
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5 follow
1
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loaded a sorted bam file in IGV but I can't see anything
assembly bam igv written 13 months ago by saadleeshehreen • 70 • updated 5 weeks ago by Biostar ♦♦ 20
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1
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119
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1
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Counting starting and ending positions of reads in reference genome
bedtools ngs bam sam rna-seq written 5 weeks ago by bobbyle0210 • 10 • updated 5 weeks ago by Pierre Lindenbaum ♦ 124k
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1
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124
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1
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How to merge different BAM files?
next-gen alignment samtools snp bam written 5 weeks ago by jaafari.omid • 50 • updated 5 weeks ago by swbarnes2 ♦ 7.0k
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117
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going from the merged bam to original bam files
merge bam samtools written 5 weeks ago by rsafavi • 40
3
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1
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141
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1
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Loop to change a @RG in a BAM file
loop bam samtools bash written 6 weeks ago by mwerseb1 • 0 • updated 6 weeks ago by Pierre Lindenbaum ♦ 124k
0
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1
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127
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1
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How to reconstruct reads or bam file from pileup
alignment samtools mpileup bam written 6 weeks ago by SSK • 0 • updated 6 weeks ago by h.mon ♦ 28k
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2
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163
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6 follow
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Is it possible to retrieve the original reads from a BAM file?
fastq next-gen bam written 6 weeks ago by elcortegano • 10 • updated 6 weeks ago by ctseto • 250
1
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185
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What do you do after obtaining sorted bam files?
bam bwa written 7 weeks ago by DNAngel • 40 • updated 7 weeks ago by swbarnes2 ♦ 7.0k
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