Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: bam • reset
or   Classic search
<prev • 1,145 results • page 1 of 39 • next >
1
vote
2
answers
130
views
2
answers
SNP calling with SAMtools on multiple samples
vcf bam samtools snp written 17 days ago by madeira.ag • 0 • updated 2 days ago by Begali • 0
12
votes
2
answers
2.6k
views
7 follow
2
answers
Trying To Pull Regions From An Online Bam File Without Downloading
bam samtools igv written 6.8 years ago by Wjeck • 480 • updated 5 days ago by Biostar ♦♦ 20
0
votes
1
answer
125
views
1
answer
Filtering BAM file to include PE reads that did not map, even though their mate did
filter bam samtools mapping read written 16 days ago by nute11a • 0 • updated 16 days ago by Istvan Albert ♦♦ 80k
0
votes
1
answer
100
views
1
answer
How to get output with read counts and read count percentages from bam file?
read counts picard samtools bam written 19 days ago by bayramliaziz • 0 • updated 19 days ago by WouterDeCoster ♦ 38k
5
votes
1
answer
160
views
5 follow
1
answer
Subsampling one bamfile multiple times?
bam subsample sequencing written 23 days ago by wjdgmlcjf • 0
3
votes
1
answer
114
views
1
answer
Bam file MC tag as integer
mc bam validatesamfile sam written 28 days ago by chariko • 30
3
votes
2
answers
131
views
2
answers
How to find a variant in a particular position in a bam file only using samtools
bam samtools sam written 24 days ago by tw617 • 30 • updated 24 days ago by swbarnes2 ♦ 5.2k
4
votes
1
answer
149
views
1
answer
Convert 2 SE bam to PE bam (alignment BWA mem)
alignment bwa bam written 7 weeks ago by mynameliuxiang • 0 • updated 25 days ago by zx8754 ♦ 7.1k
0
votes
1
answer
162
views
5 follow
1
answer
Bam header editing
header bam written 4 weeks ago by Huynh Nguyen • 0 • updated 4 weeks ago by Istvan Albert ♦♦ 80k
0
votes
0
answers
98
views
0
answers
Read In Function for BAM file processing
bam script written 5 weeks ago by Jonas.Koch • 0
3
votes
1
answer
171
views
1
answer
Extract coverage from each nucleotide position of a genome in a bam file
bed bam coverage written 5 weeks ago by MAPK • 1.4k
1
vote
0
answers
138
views
0
answers
How do get additional bam statistics
alignment samtools rna-seq bam written 5 weeks ago by t-jim • 20
7
votes
1
answer
251
views
6 follow
1
answer
How to report genomic intervals essentailly overlapping in all files?
bedtools bed bam written 6 weeks ago by Vijay Lakhujani ♦ 4.0k
3
votes
1
answer
139
views
1
answer
Find common reads between two bam files
reads bam sequencing written 6 weeks ago by yl2019 • 10 • updated 6 weeks ago by Pierre Lindenbaum ♦ 119k
10
votes
0
answers
220
views
9 follow
0
answers
Tutorial: Generating consensus sequence from bam file
fasta consensus tutorial bam written 6 weeks ago by finswimmer ♦ 11k • updated 6 weeks ago by WouterDeCoster ♦ 38k
0
votes
1
answer
168
views
1
answer
How treat a Bam file with mutiple read groups (RG)
gatk next-gen picard read group bam written 6 weeks ago by zamani_2012 • 0 • updated 6 weeks ago by Pierre Lindenbaum ♦ 119k
3
votes
1
answer
195
views
1
answer
RNA-Seq QC for aligned files (bam)
bam qc rna-seq written 6 weeks ago by genomics Newbie • 20 • updated 6 weeks ago by Friederike ♦ 3.6k
1
vote
0
answers
129
views
0
answers
Might @PG headers affect downstream analyses, and how can I safely remove them from a BAM file?
read groups bam @pg written 6 weeks ago by olikidrod • 0 • updated 6 weeks ago by h.mon ♦ 24k
17
votes
1
answer
414
views
1
answer
collapsing transcript expression to gene-level expression
featurecounts rna-seq bam written 6 weeks ago by F • 3.4k
1
vote
1
answer
154
views
1
answer
Subsampling aligned SAM/BAM files for RNA-seq analysis
downsampling bam sam rna-seq subsampling written 6 weeks ago by mohammedtoufiq91 • 40 • updated 6 weeks ago by WouterDeCoster ♦ 38k
4
votes
1
answer
131
views
1
answer
How to remove bam files that don't contain matching reads
bowtie2 bam samtools written 7 weeks ago by samlambrechts299 • 130 • updated 7 weeks ago by Pierre Lindenbaum ♦ 119k
2
votes
0
answers
166
views
0
answers
Should I remove duplicates?
duplicates next-gen bam written 7 weeks ago by F • 3.4k • updated 7 weeks ago by ATpoint ♦ 15k
1
vote
0
answers
137
views
0
answers
Seeing only "N's" in tablet genome viewer?
genome viewer bam written 7 weeks ago by tuj92050 • 0
2
votes
0
answers
170
views
0
answers
Extracting a chromosome from an indexed bam file?
bam samtools chromosome written 7 weeks ago by tuj92050 • 0
2
votes
1
answer
1.4k
views
1
answer
Bam File With Maq
bam written 7.7 years ago by Sara • 130 • updated 7 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
181
views
0
answers
Count matrix showing different results than UCSC tracks
mm10 featurecounts bigwig bam ucsc written 8 weeks ago by raquelgarza95 • 40
0
votes
1
answer
168
views
1
answer
Convert BAM files to paired end FASTQ
fastq bam samtools written 8 weeks ago by berke.toptas • 0 • updated 8 weeks ago by JC ♦ 7.7k
3
votes
0
answers
138
views
0
answers
Remove duplicate readnames from a bam file
duplicates bam atac-seq duplicate read names written 8 weeks ago by garnerim1988 • 0
0
votes
0
answers
112
views
0
answers
From mpileup on bam files to TMB calculation, how is it done?
snps bam mutations mpileup tmb written 8 weeks ago by Pin.Bioinf • 240
0
votes
0
answers
121
views
0
answers
Fixing inconsistent flags (strand info set for only one read) between RNA-seq read pairs with samtools/picard
samtools picard fixmate rna-seq bam written 8 weeks ago by ophilia30092 • 0
<prev • 1,145 results • page 1 of 39 • next >
Recent Votes
Recent Locations • All »
  • France/Nantes/Institut du Thorax - INSERM UMR1087, 2 minutes ago
  • Houston, TX, 2 minutes ago
  • United States, 7 minutes ago
  • Sweden, 8 minutes ago
  • Boston, 8 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1437 users visited in the last hour