Showing: bamreset
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Using Rsamtools to input BAM files
bam rsamtools written 5 days ago by Nathalia Scheltinga0 • updated 28 minutes ago by Biostar ♦♦ 20
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How To Extract Reads With Wrong Insert Size With Samtools
bam samtools awk written 6.8 years ago by Assa Yeroslaviz1.2k • updated 7 days ago by Biostar ♦♦ 20
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Problem with Bio-Tradis tool, help
bio-tradis tradis transposon alignment bam written 6 months ago by Lil Potato0 • updated 16 days ago by gm4340
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From per bp coverage to average coverage in 10bp intervals
genome dna-seq bam written 17 days ago by Adrian Pelin2.3k • updated 17 days ago by Alex Reynolds28k
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output of bedtools bamtofastq are empty files
bamtofastq bedtools fastq bam samtools written 4.3 years ago by szuszmok40 • updated 21 days ago by gohchengang19940
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Fastq to BAM
fastq bam written 10 weeks ago by zliew0 • updated 4 weeks ago by Biostar ♦♦ 20
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scRNAseq: Split FASTQ into cell specific FASTQ Files
cell ranger bam rna-seq split demultiplex written 3 months ago by niklas.lang0 • updated 4 weeks ago by igor8.1k
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Issue With CRAM -> BAM -> FASTQ Conversion
samtools fastq bam cram view written 5 weeks ago by Denis.keimakh0 • updated 4 weeks ago by jkbonfield150
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BWA index getting killed
fastq bam bwa index written 4 weeks ago by abbysue10 • updated 4 weeks ago by swbarnes26.1k
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csaw - Htslib import errors and missing reads/chromosomes
csaw bam chip-seq atac-seq library written 13 months ago by reskejak10 • updated 4 weeks ago by xuzhougeng0
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How to get the number of reads for a set of coordinates from a bam file.
ngs bam written 6 weeks ago by hins.20260 • updated 6 weeks ago by ATpoint21k
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targets in a bed at or above a coverage
bedfile bam 250x written 6 weeks ago by bioguy24190 • updated 6 weeks ago by harold.smith.tarheel4.4k
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ref and alt allele count from BAM file
bam allele_count rna-seq written 7 weeks ago by monaallouba0 • updated 7 weeks ago by Vitis2.2k
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Changing chromosome format in bam
picard samtools bam written 7 weeks ago by srhic0 • updated 7 weeks ago by lakhujanivijay4.3k
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Having trouble with samtools cat
bam samtools sam written 8 weeks ago by matthew.dambrosio.10 • updated 8 weeks ago by John Marshall1.7k
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Annotate counts region by region
bam chip-seq written 8 weeks ago by elb160
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How To Count The Reads Mapped To Exon And Exon-Exon Junctions?
reads gff exon sam bam written 6.2 years ago by lwc628200 • updated 8 weeks ago by m131131537810
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