Showing: bamreset
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Converting .bam file to .fasta file from a genic region
gene fasta bam convert converting written 1 day ago by ricfoz0 • updated 1 day ago by michael.ante1.8k
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99
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Convert fastq to plink .bed
bed fastq bam plink written 3 days ago by moryfranklin220 • updated 3 days ago by WouterDeCoster23k
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5
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6 follow
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How to extract reads with a known variant form a bam file
bam snp written 3 days ago by 10970492970 • updated 3 days ago by dariober8.2k
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5 follow
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Issue with RAPIDR
R bam rapidr nipt written 6 days ago by martyferr9020 • updated 6 days ago by Sean Davis23k
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IGV does not show BAM file information
next-gen rna-seq bam igv written 19 days ago by Hanan70 • updated 19 days ago by d-cameron880
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Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 24 days ago by jmzeng131440
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Why cant we split and distribute BAM for parallel processing like in HTC?
hpc bam written 26 days ago by javaclinic0 • updated 26 days ago by Pierre Lindenbaum100k
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tagAlign to BAM
encode bam tagalign written 27 days ago by rbronste150 • updated 27 days ago by venu4.5k
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Issues running RNAseqc on my bam file
picard qc bam rnaseqc rna written 27 days ago by vineelagangalapudi0 • updated 27 days ago by Pierre Lindenbaum100k
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Gatk Pipeline: Markduplicates At The End ?
workflow next-gen pipeline gatk markduplicates duplicates bam written 5.0 years ago by Pierre Lindenbaum100k • updated 27 days ago by Biostar ♦♦ 20
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4
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Bed to BAM information transfer
bed bam chip-seq footprinting sequencing written 8 months ago by rbronste150 • updated 29 days ago by Biostar ♦♦ 20
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output of bedtools bamtofastq are empty files
bamtofastq bedtools fastq bam samtools written 2.5 years ago by szuszmok40 • updated 4 weeks ago by mari.felix57230
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139
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bam file coordinate system change
bam rna-seq written 4 weeks ago by Gregor Rot400
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104 follow
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Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 6.8 years ago by Biomed4.3k • updated 4 weeks ago by bioinfo890
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12 follow
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Remove mitochondrial reads from BAM files
bam samtools rna-seq awk written 2.8 years ago by enricoferrero720 • updated 4 weeks ago by Simply Bioinformatics60
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Unsynchronized simultaneous reads on a single .bam file
bam samtools mpileup written 4 weeks ago by kennethlim2060 • updated 4 weeks ago by Brian Bushnell14k
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Extracting Reads Containing A Specific Variant From A Bam File
cigar format sam bam written 4.0 years ago by Nick Stoler60 • updated 5 weeks ago by Biostar ♦♦ 20
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2
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118
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Retrieving BAM files from known isoforms
bam isoforms written 5 weeks ago by priscillamorris900 • updated 5 weeks ago by Pierre Lindenbaum100k
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Do I need to merge bai files also, while merging bam files
bam rna-seq written 5 weeks ago by chahatupretiiitk40 • updated 5 weeks ago by Gabriel R.2.1k
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134
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IGV with subset of bam file
bam igv written 6 weeks ago by grant.hovhannisyan270
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Creating pseudo-replicates from a paired-end BAM file
bam pseudo-replicates written 6 weeks ago by James Ashmore2.1k • updated 6 weeks ago by Istvan Albert ♦♦ 74k
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6 follow
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