Showing: bamreset
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bamUtils dedup and Library information from BAM header
@rg marking duplicates bamutils library bam written 11 days ago by skhan10 • updated 11 days ago by h.mon13k
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Remove clipped reads
bam written 13 days ago by finswimmer1.5k • updated 13 days ago by Pierre Lindenbaum106k
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Counting soft clipped bases and reads
bam written 14 days ago by finswimmer1.5k • updated 14 days ago by d-cameron1.5k
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BAM File Export Coverage Values from IGV or using PySam/Samtools
alignment samtools igv bam sequencing written 15 days ago by EOX12310 • updated 15 days ago by cpad01124.5k
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BAM to gene names
targeted bam written 16 days ago by hbrwatkins0 • updated 15 days ago by Bastien HervĂ©660
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Clarification on Bedtools Intersect Usage
bedtools intersect samtools mpileup bam written 16 days ago by Noam Teyssier10 • updated 16 days ago by Kevin Blighe17k
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Get length of the alignment from bam file
bam written 16 days ago by David70 • updated 16 days ago by Pierre Lindenbaum106k
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Bed File Bedpe Format
bedtools bed bam conversion written 6.7 years ago by Assa Yeroslaviz1.1k • updated 20 days ago by Biostar ♦♦ 20
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How do I get the read counts for a specific exon
bam exon written 4 weeks ago by b10hazard20 • updated 4 weeks ago by Ram14k
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Samtools sort error with a bam file
bam samtools rna-seq sort written 4 weeks ago by Bioinfo170 • updated 4 weeks ago by Devon Ryan78k
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Identifying discordantly mapped reads
paired-end bam samtools written 2.5 years ago by Linda150 • updated 4 weeks ago by Pierre Lindenbaum106k
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CNV detection using BAM file
bam cnv written 6 weeks ago by reza180 • updated 5 weeks ago by Eric T.2.1k
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