Showing: bamreset
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different bam from same NGS data
bam bwa written 5 days ago by gab20 • updated 5 days ago by jsporter60
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Help with bamfilter
sequencing blobtools bam assembly written 12 days ago by max_1910 • updated 6 days ago by colindaven900
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8
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Find bams with identical names and merge them
shell picard samtools sam bam written 12 days ago by brendes20 • updated 10 days ago by cpad011210k
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5 follow
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losing reads bam to fastq
fixmate fastq bam whole genome sequencing written 15 days ago by soleimani_homa0 • updated 15 days ago by finswimmer8.8k
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34 follow
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Ignore SAM header section using awk
bam sam sequencing written 18 days ago by max_1910 • updated 18 days ago by RamRS20k
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Program to calculate and add the NM tag to a bam file
nm bam written 18 months ago by abascalfederico1.0k • updated 24 days ago by pammybiotech0
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102
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Extract unmapped reads using RNAME
next-gen sequence bam written 25 days ago by max_1910 • updated 24 days ago by finswimmer8.8k
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Mismatch and Indel statistics from BAM/SAM file
indel bam sam written 20 months ago by sbdk8240 • updated 4 weeks ago by FatihSarigol110
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1
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CRAM reference registry and the GRch38 reference genome
cram bam samtools variantcalling grch38 written 4 weeks ago by Mehulsharma.25310 • updated 4 weeks ago by h.mon22k
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162 follow
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 4.4 years ago by Obi Griffith17k • updated 4 weeks ago by Renesh1.5k
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How to recreate FASTQ from BAM
bam rna-seq sequencing written 5 weeks ago by simplitia30 • updated 5 weeks ago by ctseto20
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Extracting the full read ID when converting from BAM -> FASTQ
fastq bam samtools bwa written 5 weeks ago by ttmigueltt0 • updated 5 weeks ago by toralmanvar730
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Stop GATK MergeBamAlignment from unmapping reads
gatk4 gatk alignment bam mergebamalignment written 5 weeks ago by ttmigueltt0 • updated 5 weeks ago by finswimmer8.8k
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7 follow
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samtools: splitting a bam file putting all scaffolds together
splitting bam samtools scaffold written 5 weeks ago by Fedster20 • updated 5 weeks ago by finswimmer8.8k
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How to retain SEQ and QUAL fields in BAM file after filtering?
bam samtools bwa written 6 weeks ago by toddknutson50 • updated 5 weeks ago by Pierre Lindenbaum116k
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Extracting tlen From BAM File Using htsjdk
htsjdk bam samtools sam tlen written 2.3 years ago by Hakan.Erol.HE10 • updated 6 weeks ago by Biostar ♦♦ 20
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Making BAM or SAM files equivalent
alignment popoolation2 sam popoolation bam written 6 weeks ago by keturner1230 • updated 6 weeks ago by finswimmer8.8k
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what is the easiest/fastest way to convert from BAM to GTF
gtf bam written 3 months ago by Sam80 • updated 6 weeks ago by Biostar ♦♦ 20
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how to identify disease variants from bam file ?
atacseq vcf bam disease variants written 7 weeks ago by masaver0 • updated 7 weeks ago by Garan540
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