Showing: bamreset
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bam to fasta error using samtools
bam fa written 5 days ago by christacaggiano10 • updated 5 days ago by Ram11k
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How to remove Read Name (1st column) extension from a BAM file?
paired-end bam written 6 days ago by irinkish10 • updated 6 days ago by Pierre Lindenbaum91k
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Question about MD tag in BAM file
bam md written 12 days ago by abascalfederico850
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Error of bam-to-sam conversion using samtools
tophat2 samtools sam rna-seq bam written 16 days ago by Gary370 • updated 16 days ago by genomax224k
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Extract the mapped contig sequences from SAM/BAM file
bam samtools sam bwa written 18 days ago by sbdk8230 • updated 16 days ago by haro8760
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Detecting Variants near repeats
vcf repeats bam freebayes written 2.9 years ago by Adrian Pelin1.9k • updated 18 days ago by Macspider580
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Distinguish BAM vs BAMPE format
bampe bam bwa written 19 days ago by cpak198110
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bam stats F1F2/F1R2/R1F2/R1R2/F2F1/F2R1/R2F1/R2R1
bam written 20 days ago by 141341254653464453.1k • updated 20 days ago by John10k
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bam-readcount error bam_header_read
bam-readreadcount bam_header_read bam written 25 days ago by fangqiong.ling0 • updated 20 days ago by Chris Miller17k
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SAM files alignment section: PNEXT
bam samtools sam written 23 days ago by AlchemistMoz10 • updated 23 days ago by Devon Ryan63k
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Filter hits that aligned concordantly exactly 1 times base on mpq>40
bam samtools written 24 days ago by User000240 • updated 24 days ago by Brian Bushnell10k
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Trim Reads From BAM files
bamutil bam trim written 4 weeks ago by fusion.slope110 • updated 4 weeks ago by genomax224k
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BAM to BIGWIG
bioinformatics github bam bigwig terminal written 4 weeks ago by robbenstijn0 • updated 4 weeks ago by EagleEye3.4k
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Necessary to close pysam.AlignmentFile?
python bam pysam written 4 weeks ago by AlchemistMoz10 • updated 4 weeks ago by Devon Ryan63k
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Anyone used BAMSurgeon to spike in 1KB insertions/deletions?
genome bam bamsurgeon svs written 18 months ago by sichan40 • updated 5 weeks ago by lzy0
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samtool flagstat question
bam samtools written 22 months ago by alex130 • updated 5 weeks ago by Biostar ♦♦ 10
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 2.6 years ago by Obi Griffith14k • updated 5 weeks ago by al-ash0
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Error with correctGCBias in deepTools
deeptools next-gen bam written 5 weeks ago by clmin10 • updated 5 weeks ago by Devon Ryan63k
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