Showing: bamreset
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185
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12
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101k
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87 follow
12
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Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 6.4 years ago by Biomed4.2k • updated 3 hours ago by bioinfo870
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89
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4
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1
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94
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1
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0
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100
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122
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2
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2
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124
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2
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Compute inner mate distance for paired-end reads in a bam file
paired picard bam written 3 days ago by bioinfo870 • updated 3 days ago by Devon Ryan68k
7
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2
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210
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2
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How to generate alignment report from bam files
alignment bam written 4 days ago by kin1820 • updated 4 days ago by Pierre Lindenbaum95k
2
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2
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649
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2
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How to change the quality score of reads ? (quick help is appreciated)
tophat bam fastq rna-seq written 14 months ago by mbparsa10 • updated 5 days ago by madhu.91240
32
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8
answers
17k
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10 follow
8
answers
Efficient And Fastest Way To Sort Large (>100Gb) Bam Files?
picard samtools bam sort written 5.3 years ago by Rm7.5k • updated 5 days ago by cmdcolin630
2
votes
1
answer
111
views
1
answer
8
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1
answer
128
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5 follow
1
answer
BAM compression: .tar.gz = same size as before?
gz tar compression bam written 7 days ago by Marvin90 • updated 7 days ago by b.nota3.5k
4
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0
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154
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3
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1
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106
views
1
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samtools sorting to index a BAM file
bam samtools written 11 days ago by db300010 • updated 11 days ago by Pierre Lindenbaum95k
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67
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1
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2
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206
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2
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differential exon usage
exon rna-seq bam written 8 weeks ago by Lila M 280 • updated 14 days ago by kristoffer.vittingseerup110
2
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88
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5 follow
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3
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2
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136
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6 follow
2
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2
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1
answer
120
views
1
answer
Unmapped Pairs in Bam file
assembly next-gen bam alignment written 18 days ago by user19100610 • updated 15 days ago by Devon Ryan68k
14
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2
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179
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5 follow
2
answers
0
votes
0
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68
views
0
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Trying to check plasmid alignment
plasmid bam igv written 21 days ago by gracie0
1
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1
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1
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0
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1
answer
703
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1
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fetch fully unaligned pairs and pairs with one unaligned read with samtools view
bam samtools written 2.8 years ago by 141341254653464453.2k • updated 24 days ago by Biostar ♦♦ 20
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80
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5
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1
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161
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1
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0
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61
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0
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2
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102
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2
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Tool for BAM coverage without the soft clipping base
softclipping bam coverage written 29 days ago by nayshool20 • updated 29 days ago by Pierre Lindenbaum95k
0
votes
1
answer
92
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1
answer
BAM file statics and heterozygoty rate
alignment bam written 29 days ago by kk.mahsa40 • updated 29 days ago by Gabriel R.1.9k
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2
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145
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5 follow
2
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1
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0
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113
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0
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CNV Calling- CopywriteR
copywriter bam rstudio written 4 weeks ago by julia0 • updated 4 weeks ago by WouterDeCoster19k
2
votes
1
answer
147
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1
answer
From bam paired files to fasta
fasta fastq protein-coding genes paired-reads bam written 4 weeks ago by chevivien50 • updated 4 weeks ago by Istvan Albert ♦♦ 71k
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