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How to check size of genome?
bam bp written 4 days ago by arianc0 • updated 3 days ago by Alex Reynolds31k
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How to convert fastq to bam?
fastq bam written 10 days ago by arianc0 • updated 10 days ago by ATpoint44k
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Combine multiple samtools view
alignment samtools bam written 10 days ago by rah20 • updated 10 days ago by GenoMax94k
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Program to calculate and add the NM tag to a bam file
nm bam written 3.5 years ago by abascalfederico1.1k • updated 20 days ago by Biostar ♦♦ 20
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Soft Clipped read 3' end position
htsjdk java bam written 24 days ago by mhasa00650 • updated 24 days ago by d-cameron2.3k
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Multisample BAM file
snp calling bam samtools written 25 days ago by gubrins60 • updated 25 days ago by vareenjuriya0
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3
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Make bam index human readable
bai bam index written 5.0 years ago by dariober11k • updated 27 days ago by baye.james10
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Problem with qualimap BAM file
qualimap bam bamfile error rna-seq written 4 weeks ago by luzglongoria40 • updated 4 weeks ago by Pierre Lindenbaum133k
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Extracting only reads mapped to specific genomic region
fasta bam mapping written 6 weeks ago by agata10 • updated 6 weeks ago by JC12k
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How to count the number of alignments in a bam file without using samtools?
bam written 6 weeks ago by steve2.7k • updated 6 weeks ago by xiaoguang50
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Tool: Filtering BAM files efficiently
genome alignment sam bam tool written 6 weeks ago by ddeemer0
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7 follow
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Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 3.2 years ago by jmzeng1314110 • updated 6 weeks ago by ATpoint44k
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How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 6.6 years ago by krithika.gu280 • updated 7 weeks ago by Pierre Lindenbaum133k
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genome coverage visualization
genome bedtools bam coverage written 7 weeks ago by gubrins60 • updated 7 weeks ago by bernatgel2.8k
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Transcript sequence aligns twice on the reference
alignement bam written 10 weeks ago by pablo150 • updated 10 weeks ago by JC12k
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Truncated sam file - Parse error
bam sam bwa written 3.4 years ago by fiona.newberry80 • updated 10 weeks ago by dB0
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