Showing: bamreset
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How to extract the same mapped region by multiple samples ?
samples bam map written 1 day ago by Picasa390 • updated 1 day ago by Alex Reynolds26k
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find coverage of specific exomes from a bam file
bedtools genomecov bam coverage bed written 5 days ago by lait120 • updated 5 days ago by Pierre Lindenbaum114k
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Making a counts
feauturecounts bam counts rna-seq written 8 days ago by frozmanik0 • updated 8 days ago by h.mon21k
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Get genes and coverage/depth per gene from sam/bam
ngs bam sam coverage per gene depth per gene written 13 days ago by prishly0 • updated 13 days ago by Charles Warden5.6k
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BAM file doesn't show the altered sample identifier
fastq bam written 14 days ago by Badh20 • updated 14 days ago by finswimmer6.7k
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Adding read groups to large BAM files
alignment bam written 15 days ago by Fungsten0 • updated 15 days ago by ATpoint9.1k
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Where Can I Download Some Bam Files?
bioinformatics bam rna-seq written 6.5 years ago by snakesgun110 • updated 15 days ago by Roman Valls Guimerà510
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How to annotate chloroplast genome
.gff annotation bam written 19 days ago by kristina.mahan20 • updated 19 days ago by goodez380
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Download SAM/BAM files from SRA takes ages!!!
sra bam written 15 months ago by Alejandro Jimenez Sanchez120 • updated 20 days ago by shengwei30
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Is there a single header file somewhere I can use to read bam?
bam C c++ written 22 days ago by Click downvote650 • updated 22 days ago by John Marshall1.4k
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Reheadering a subsetted bam gives truncated file
reheader header samtools bam written 3 months ago by Luciferine0 • updated 25 days ago by Biostar ♦♦ 20
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Varscan2 copynumber 'Parsing Exception' error
varscan2 copynumber samtools bam whole exome written 2.2 years ago by Vanish00710 • updated 27 days ago by jgarces0
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Extracting Read Pairs From Region So That All Pairs Remain Intact
fastq picard samtools bam written 5.2 years ago by Davy360 • updated 28 days ago by cmdcolin920
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loaded a sorted bam file in IGV but I can't see anything
assembly bam igv written 5 weeks ago by saadleeshehreen40 • updated 5 weeks ago by Emily_Ensembl16k
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Multi-part TCGA BAMs?
data bam cancer written 6 weeks ago by lucas.lochovsky0 • updated 6 weeks ago by Kevin Blighe31k
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Adding read group to bam files from multiplexed samples
gatk picard bam written 3 months ago by serpalma.v20 • updated 6 weeks ago by Biostar ♦♦ 20
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