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BAM Header for ATAC-seq
R bam atac-seq written 24 days ago by sophia.dingg0 • updated 6 hours ago by Biostar ♦♦ 20
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How to download BAM file from VM
vm bam download written 4 days ago by nickhir10
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How to remove reads with only Ns from bam/sam/cram file?
samtools bam cram sam remove reads written 17 days ago by erik.stricker0 • updated 17 days ago by Anand Rao300
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Samview from bam file aligned to cDNA reference
bam sam rna-seq written 4.2 years ago by bharata1803450 • updated 19 days ago by Biostar ♦♦ 20
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Making BAM or SAM files equivalent
alignment popoolation2 sam popoolation bam written 19 months ago by keturner1230 • updated 24 days ago by Biostar ♦♦ 20
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How to get inserted bases using pysam pileup
next-gen alignment pysam bam written 6 weeks ago by va9010 • updated 29 days ago by Biostar ♦♦ 20
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Adding annotations to the bam file from the txt file
sequence samtools rna-seq bam written 4 weeks ago by ssaaren0 • updated 4 weeks ago by Ido Tamir5.1k
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IGV Web App inside Flask Server
flask alignment bam igv written 12 months ago by milind_ag10 • updated 4 weeks ago by Jim Robinson280
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Bam File: Change Chromosome Notation
bam samtools written 8.7 years ago by Lisanne130 • updated 5 weeks ago by sacha1.9k
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Filter bam files based on length of contig
assembly metagenomics bam map sam written 5 weeks ago by susheelbhanu0 • updated 5 weeks ago by ATpoint36k
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Issue with Duplicates reads in Exom Data
duplicates alignment bam sequencing written 6 weeks ago by Ranan Jyoti Sarma60 • updated 6 weeks ago by i.sudbery8.1k
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Rna-Seq Split Gap Size Cutoff?
rnaseq bam written 6.8 years ago by Alex Reynolds30k • updated 6 weeks ago by Biostar ♦♦ 20
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quality check of bam files
gatk quality bam sam written 7 weeks ago by gabri.mochales30 • updated 7 weeks ago by Pierre Lindenbaum129k
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Improve the speed of Haplotypecaller
vcf gatk haplotypecaller bam written 7 weeks ago by gabri.mochales30 • updated 7 weeks ago by Pierre Lindenbaum129k
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Merging bam files with GATK
gatk merge bam written 7 weeks ago by gabri.mochales30 • updated 7 weeks ago by Pierre Lindenbaum129k
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