Showing: bamreset
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Rename Tag in BAM file
bam written 1 day ago by i.sudbery6.3k • updated 1 day ago by Pierre Lindenbaum124k
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"Error in splitted_reads[[1]] : subscript out of bounds"
nipter bam written 5 days ago by ignizamutdinov0 • updated 5 days ago by ATpoint25k
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Clipping reads within BAM files?
bam written 6 days ago by devenvyas600 • updated 6 days ago by manuel.belmadani1.1k
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suppress pysam index warnings.
python bam pysam written 11 days ago by b10hazard20 • updated 11 days ago by John Marshall1.8k
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Sampling random reads from BAM files with allowing same reads
reads bam samtools random_sampling written 12 days ago by SSK0 • updated 12 days ago by benformatics1.2k
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Missing SNPs in sequencing.com from BAM file
missing bam snp sequencing written 29 days ago by imbiling0 • updated 16 days ago by Amar440
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how to visualize rna-seq coverage track in igv?
normalization bam coverage rna-seq igv written 17 days ago by Zee_S50 • updated 17 days ago by jared.andrews073.9k
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Twist Bioscience BAM example
data twist bam capture written 17 months ago by sacha1.8k • updated 17 days ago by Biostar ♦♦ 20
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exon-intron reads in neuron samples
alignment sam rna-seq bam written 19 days ago by rgescudero30 • updated 19 days ago by geek_y10.0k
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Mapping quality score of clipped reads
python bam pysam written 19 days ago by radwa.raed10 • updated 19 days ago by swbarnes27.0k
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Tutorial: How to download raw sequence data from GEO/SRA
geo sra fastq tutorial download bam written 5.2 years ago by Obi Griffith18k • updated 19 days ago by yousefifariba60
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How to get chrM chr1 ...chr22 chrX chrY order in my bam file
gatk picard snp bam sort written 24 days ago by Ada0 • updated 23 days ago by jkbonfield200
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How to introduce artificial mutation in bam
bam mismatch written 25 days ago by bassanio20 • updated 25 days ago by h.mon28k
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Calculate the area covered more than a certain depth
next-gen coverage bam sequencing written 5 weeks ago by Floydian_slip130 • updated 4 weeks ago by yztxwd170
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How to subset bamfile based on chromosome IDs
bam freebayes subset written 5 weeks ago by mernster0 • updated 5 weeks ago by ATpoint25k
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loaded a sorted bam file in IGV but I can't see anything
assembly bam igv written 13 months ago by saadleeshehreen70 • updated 5 weeks ago by Biostar ♦♦ 20
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How to merge different BAM files?
next-gen alignment samtools snp bam written 5 weeks ago by jaafari.omid50 • updated 5 weeks ago by swbarnes27.0k
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Loop to change a @RG in a BAM file
loop bam samtools bash written 6 weeks ago by mwerseb10 • updated 6 weeks ago by Pierre Lindenbaum124k
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How to reconstruct reads or bam file from pileup
alignment samtools mpileup bam written 6 weeks ago by SSK0 • updated 6 weeks ago by h.mon28k
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Is it possible to retrieve the original reads from a BAM file?
fastq next-gen bam written 6 weeks ago by elcortegano10 • updated 6 weeks ago by ctseto250
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What do you do after obtaining sorted bam files?
bam bwa written 7 weeks ago by DNAngel40 • updated 7 weeks ago by swbarnes27.0k
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