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<prev • 1,323 results • page 1 of 45 • next >
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Samtools error -1
bam samtools rna-seq written 1 day ago by rin • 30
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244
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How to get inserted bases using pysam pileup
next-gen alignment pysam bam written 5 months ago by va90 • 10 • updated 3 days ago by Lhl • 730
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48
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Calculation of the genotype likelyhood from raw data
genotype likelihood bam samtools counts raw data written 4 days ago by vit.filippo • 50
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1
answer
85
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1
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retain UMIs when converting bam to vcf file
vcf bam rna-seq sequencing written 12 days ago by theodore.killian • 10 • updated 12 days ago by swbarnes2 ♦ 8.9k
2
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1
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127
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1
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How to assign read groups to bam files?
bam written 13 days ago by MAPK • 1.6k
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129
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5 follow
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Revert bam to fastq
bam sam written 17 days ago by MAPK • 1.6k • updated 17 days ago by h.mon ♦ 31k
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1
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1
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Error loading BAM on IGV
software error bam igv written 18 days ago by Apex92 • 20 • updated 18 days ago by Pierre Lindenbaum ♦ 131k
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1
answer
100
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1
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Reading not properly paired reads from a BAM file
java bam samreader written 21 days ago by mhasa006 • 50 • updated 20 days ago by Pierre Lindenbaum ♦ 131k
1
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1
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91
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1
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paired reads aligned at the same genomic position
alignment bam written 24 days ago by irfanwustl • 10 • updated 24 days ago by MatthewP • 760
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95
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How to know the aligned base of a specific position from a read
alignment bam written 24 days ago by irfanwustl • 10
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107
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Which read should be considered to calculate methylation value?
biscuit bam methylation written 4 weeks ago by irfanwustl • 10 • updated 24 days ago by Biostar ♦♦ 20
1
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102
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How to convert from .spec to .bam?
bam file-formatting spec written 28 days ago by gmora • 30
3
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2
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120
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2
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Extract bed regions from CRAM files
bam cram written 4 weeks ago by MAPK • 1.6k
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84
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"C strand" and "G strand" from bisulfite converted bam files
bam methylation bisulfite written 4 weeks ago by irfanwustl • 10
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135
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Merging the libraries
readgroupname merge bam written 5 weeks ago by User000 • 390
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1
answer
141
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1
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NGS Sequencing Outputs
fasta illumina ngs bam fastq written 5 weeks ago by speycast • 0 • updated 5 weeks ago by genomax ♦ 91k
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0
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112
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How to count the paired end reads number in given regions
hi-c paired-end bam hic-pro written 6 weeks ago by ben.kunfang • 10
4
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1
answer
292
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1
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Merging bam files with GATK
gatk merge bam written 5 months ago by gabri.mochales • 30
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2
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173
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2
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average depth of each region in a BED file calculated from a BAM file
bed ngs bam coverage written 9 weeks ago by Floydian_slip • 130
0
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0
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184
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0
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Different number of sequences on the same file between two tools
sequencing bam genometools pacbio counts written 3 months ago by pablo • 140 • updated 8 weeks ago by Biostar ♦♦ 20
38
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5
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544
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12 follow
5
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Forum: Why does bioinformatics use a special format like a BAM file instead of a database like SQLite?
forum bam samtools sam written 8 weeks ago by 2xijok • 50 • updated 8 weeks ago by Jeremy Leipzig ♦ 19k
4
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1
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249
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1
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Samtools merge BAM files using snakemake
bam samtools snakemake written 9 weeks ago by User000 • 390 • updated 9 weeks ago by Devon Ryan ♦ 97k
3
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1
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169
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1
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BAM to FASTQ discards most reads as singletons though flagstat says otherwise
bam samtools written 9 weeks ago by vkkodali • 2.1k
3
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1
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450
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1
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Big differences between two alignment tools outputs: BWA vs NanoPipe
alignment nanopipe bwa nanopore bam written 5 months ago by alexandru.bologa.marian • 0 • updated 10 weeks ago by Biostar ♦♦ 20
2
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1
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1.4k
views
1
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Error running sam-dump
ncbi bam samtools sam written 4.0 years ago by beausoleilmo • 330 • updated 11 weeks ago by Biostar ♦♦ 20
1
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1
answer
216
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1
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Normalizing Bigwig values
normalization ngs bam bigwig written 11 weeks ago by hkitano • 0 • updated 11 weeks ago by jared.andrews07 ♦ 7.5k
0
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1
answer
179
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1
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Wiggle Files, BAM/SAM Help
wiggle bam sam written 11 weeks ago by dylan.t.fossl • 0 • updated 11 weeks ago by jkkbuddika • 160
45
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6
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43k
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16 follow
6
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BAM/SAM to FASTA conversion
bam sam written 5.7 years ago by biolab • 1.2k • updated 11 weeks ago by kristina.mahan • 100
2
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2
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172
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2
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how to change bam file chromosome names using sed or awk?
bam awk written 11 weeks ago by qianxu0517 • 0 • updated 11 weeks ago by swbarnes2 ♦ 8.9k
4
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1
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380
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1
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snakemake different multiple input paths not in output or rule all
bam samtools snakemake samtools sort written 12 weeks ago by StartR • 20 • updated 12 weeks ago by dariober ♦ 11k
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