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Samtools error -1
bam samtools rna-seq written 1 day ago by rin30
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How to get inserted bases using pysam pileup
next-gen alignment pysam bam written 5 months ago by va9010 • updated 3 days ago by Lhl730
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retain UMIs when converting bam to vcf file
vcf bam rna-seq sequencing written 12 days ago by theodore.killian10 • updated 12 days ago by swbarnes28.9k
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How to assign read groups to bam files?
bam written 13 days ago by MAPK1.6k
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Revert bam to fastq
bam sam written 17 days ago by MAPK1.6k • updated 17 days ago by h.mon31k
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Error loading BAM on IGV
software error bam igv written 18 days ago by Apex9220 • updated 18 days ago by Pierre Lindenbaum131k
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Reading not properly paired reads from a BAM file
java bam samreader written 21 days ago by mhasa00650 • updated 20 days ago by Pierre Lindenbaum131k
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paired reads aligned at the same genomic position
alignment bam written 24 days ago by irfanwustl10 • updated 24 days ago by MatthewP760
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Which read should be considered to calculate methylation value?
biscuit bam methylation written 4 weeks ago by irfanwustl10 • updated 24 days ago by Biostar ♦♦ 20
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Extract bed regions from CRAM files
bam cram written 4 weeks ago by MAPK1.6k
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Merging the libraries
readgroupname merge bam written 5 weeks ago by User000390
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NGS Sequencing Outputs
fasta illumina ngs bam fastq written 5 weeks ago by speycast0 • updated 5 weeks ago by genomax91k
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Merging bam files with GATK
gatk merge bam written 5 months ago by gabri.mochales30
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Different number of sequences on the same file between two tools
sequencing bam genometools pacbio counts written 3 months ago by pablo140 • updated 8 weeks ago by Biostar ♦♦ 20
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12 follow
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Samtools merge BAM files using snakemake
bam samtools snakemake written 9 weeks ago by User000390 • updated 9 weeks ago by Devon Ryan97k
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Error running sam-dump
ncbi bam samtools sam written 4.0 years ago by beausoleilmo330 • updated 11 weeks ago by Biostar ♦♦ 20
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Normalizing Bigwig values
normalization ngs bam bigwig written 11 weeks ago by hkitano0 • updated 11 weeks ago by jared.andrews077.5k
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Wiggle Files, BAM/SAM Help
wiggle bam sam written 11 weeks ago by dylan.t.fossl0 • updated 11 weeks ago by jkkbuddika160
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BAM/SAM to FASTA conversion
bam sam written 5.7 years ago by biolab1.2k • updated 11 weeks ago by kristina.mahan100
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how to change bam file chromosome names using sed or awk?
bam awk written 11 weeks ago by qianxu05170 • updated 11 weeks ago by swbarnes28.9k
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