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<prev • 870 results • page 1 of 29 • next >
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Remove copied reads from a bam
bam written 1 day ago by danny.k.wells • 0
2
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104
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0
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Extract reads from specific target in .bam file
filter bam written 5 days ago by Picasa • 310
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2
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119
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2
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VIew reads sorted by name in IGV
bam samtools igv written 7 days ago by nchuang • 160 • updated 5 days ago by d-cameron • 850
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1
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106
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1
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Is there an R function that transforms a decimal SAM FLAG into a list of strings?
flag R bam sam alignment format written 6 days ago by cristian • 80
2
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1
answer
108
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1
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Bam file with unmapped reads from another genome than reference
no reference genome unmapped bam written 7 days ago by Vca80553 • 0
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92
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Fermikit : Any recommendation on visualization of the output files?
indel fermikit vcf visualization bam written 7 days ago by johnnytam100 • 10
29
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6
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10 follow
6
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Should I Remove The Unmapped Reads From My Bam ?
short next-gen samtools bam sequencing written 5.6 years ago by Pierre Lindenbaum ♦ 98k • updated 8 days ago by Phoenix • 100
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148
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0
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Coverage of reference from the BAM file
alignment sam bam written 8 days ago by brs1111 • 10
1
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1
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139
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1
answer
Extracting descriptive metrics from variant reads in BAM
bam snp written 11 days ago by ognjen011 • 40 • updated 11 days ago by Pierre Lindenbaum ♦ 98k
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1.4k
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Rna-Seq Split Gap Size Cutoff?
rnaseq bam written 4.0 years ago by Alex Reynolds ♦ 20k • updated 15 days ago by Biostar ♦♦ 20
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96
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Extract assembled transcripts from Cufflinks gtf without to use reference genome
gtf cufflinks bcftools rna-seq bam written 17 days ago by marija.durdevic • 0
3
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1
answer
119
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1
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bam to fastq conversion, number of reads do not match
picard sam bam rna-seq written 18 days ago by Anushka • 20 • updated 18 days ago by Pierre Lindenbaum ♦ 98k
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2
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121
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2
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Any tool to output unmapped or mapped_with_clips reads from a BAM to two fastq files for PE data?
unmapped bam fastq written 18 days ago by chen • 970 • updated 18 days ago by Pierre Lindenbaum ♦ 98k
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1
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149
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1
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extracting fasta sequence from aligned reads
fasta bam rna-seq written 20 days ago by amoltej • 80 • updated 18 days ago by h.mon ♦ 8.7k
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111
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0
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small .bam files to test GATK Variant Discovery pipeline
gatk variant discovery bam small test written 19 days ago by alongalor • 0
0
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2
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182
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2
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BAM Index Chunks
bam written 24 days ago by t.marvin.christian • 0 • updated 24 days ago by John Marshall • 1.1k
1
vote
1
answer
152
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1
answer
Mismatch and Indel rate in alignment
alignment sam bam written 25 days ago by sbdk82 • 30 • updated 25 days ago by prasundutta87 • 110
2
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2
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146
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2
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What is the algorithm or formula for converting SAM to BAM?
ngs bam samtools sam written 26 days ago by Phoenix • 100 • updated 26 days ago by Devon Ryan ♦ 70k
0
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1
answer
211
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6 follow
1
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Truncated sam file - Parse error
bam sam bwa written 29 days ago by fiona.newberry • 60 • updated 29 days ago by ATPoint • 1.1k
3
votes
1
answer
266
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5 follow
1
answer
CNV Calling- CopywriteR
copywriter bam rstudio written 4 months ago by julia • 0 • updated 29 days ago by heshiy88 • 20
3
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2
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515
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2
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For bam and mutation signature I need coverage and number of observations
vcf next-gen bam written 11 months ago by kulvait • 200 • updated 4 weeks ago by cpad0112 • 1.9k
1
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1
answer
266
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1
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Extract consensus dna sequence of multiple genes from multiple bam files in fasta format
fasta consensus genes samtools bam written 5 weeks ago by bioinfo8 • 90
3
votes
1
answer
150
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1
answer
samtools return seek position
bam samtools written 4 weeks ago by peiqi1122 • 0 • updated 4 weeks ago by Devon Ryan ♦ 70k
6
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2
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282
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2
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what should a SAM/BAM record contain when there are no quality scores
bam samtools sam written 5 weeks ago by Ann • 2.1k • updated 5 weeks ago by jkbonfield • 30
2
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0
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198
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0
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convert bam to clustal
R clustal alignment bioconductor bam written 5 weeks ago by bioinfo8 • 90
3
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1
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145
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1
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Strip primer sequences from sequencing reads
amplicon-seq dna-seq bam written 5 weeks ago by kulvait • 200 • updated 5 weeks ago by Robert Sicko • 480
0
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0
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155
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0
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input for Connor: FASTQ files from several lanes
fastq bam connor written 6 weeks ago by lien • 40
7
votes
1
answer
261
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5 follow
1
answer
how to adjust BAM header after extracting only mapped reads from BAM files
bam samtools written 12 weeks ago by Ric • 140 • updated 8 weeks ago by glihm • 400
3
votes
1
answer
171
views
1
answer
Parsing BAM to genome feature
annotation bam sam rna-seq written 8 weeks ago by dzb • 0 • updated 8 weeks ago by Devon Ryan ♦ 70k
0
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197
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Inferring the zygosity of large indels (transposon variants) from bam paired-end mapping to reference and bed coordinate files
indel zygosity alignment samtools bam written 9 weeks ago by rimjhim.roy.ch • 50
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