Showing: bamreset
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6
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208
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what should a SAM/BAM record contain when there are no quality scores
bam samtools sam written 1 day ago by Ann2.1k • updated 10 hours ago by jkbonfield20
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0
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128
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3
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102
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1
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Strip primer sequences from sequencing reads
amplicon-seq dna-seq bam written 4 days ago by kulvait200 • updated 4 days ago by Robert Sicko480
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106
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7
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1
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216
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5 follow
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how to adjust BAM header after extracting only mapped reads from BAM files
bam samtools written 7 weeks ago by Ric130 • updated 21 days ago by glihm400
3
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1
answer
134
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1
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Parsing BAM to genome feature
annotation bam sam rna-seq written 22 days ago by dzb0 • updated 22 days ago by Devon Ryan70k
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145
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2
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1
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188
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1
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Add tags to BAM/SAM file
sequencing alignment sam bam rna-seq written 22 days ago by dzb0 • updated 22 days ago by Matt Shirley7.7k
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3
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269
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9 follow
3
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Download SAM/BAM files from SRA takes ages!!!
sra bam written 24 days ago by Alejandro Jimenez Sanchez90 • updated 23 days ago by ghostforever.shi10
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1
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181
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1
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Missing header sam file
header chip-seq sam bam written 24 days ago by G.Car20 • updated 24 days ago by Pierre Lindenbaum96k
3
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1
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136
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1
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Program to calculate and add the NM tag to a bam file
nm bam written 28 days ago by abascalfederico960 • updated 28 days ago by trausch650
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136
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Filter single exon reads
single exon reads bam written 29 days ago by sloux0
11
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1
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233
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6 follow
1
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Removing PCR duplicates - fastq or BAM?
duplicates fastq alignment bam written 4 weeks ago by rbronste140 • updated 29 days ago by Istvan Albert ♦♦ 73k
1
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1
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153
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1
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Samtools flagstat unpaired reads
bowtie2 bam samtools written 4 weeks ago by rbronste140 • updated 4 weeks ago by Pierre Lindenbaum96k
7
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1
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253
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1
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9
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2
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226
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6 follow
2
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BAM to CRAM to BAM
bam cram written 5 weeks ago by ElUretsky20 • updated 4 weeks ago by James Bonfield110
3
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1
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133
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1
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deepTools draw coverage for specific region
deeptools alignment bam written 4 weeks ago by Medhat6.8k • updated 4 weeks ago by Devon Ryan70k
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182
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0
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0
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144
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1
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170
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5 follow
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2
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1
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200
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1
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3
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148
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1
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11
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1
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840
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1
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In-place writable BAM files
bgzip bam written 17 months ago by John11k • updated 5 weeks ago by Biostar ♦♦ 20
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2
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12k
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2
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BAM/SAM to FASTA conversion
bam sam written 2.5 years ago by biolab910 • updated 5 weeks ago by Chadi Saad30
1
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1
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131
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1
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Difference between Alignment quality and Mapping quality
sequence next-gen bam written 5 weeks ago by ammarsabir1550 • updated 5 weeks ago by jh.monin10
3
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1
answer
134
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1
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Rsamtools and BAM file discordance
reads bam samtools rsamtools igv written 6 weeks ago by cristian70 • updated 6 weeks ago by Devon Ryan70k
7
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1
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163
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6 follow
1
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49
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5
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21k
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31 follow
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How to plot coverage and depth statistics of a bam file
sequencing next-gen coverage bam depth written 3.2 years ago by krithika.gu150 • updated 7 weeks ago by bioinfo880
188
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11
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104k
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89 follow
11
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Tools To Calculate Average Coverage For A Bam File?
bam coverage sequencing written 6.6 years ago by Biomed4.2k • updated 7 weeks ago by bioinfo880
4
votes
1
answer
205
views
1
answer
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