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Is BED file generated by bametobed sorted ?

bedtools ngs bamtobed coverage sequencing written 11 weeks ago by pacman • 50 • updated 11 weeks ago by Alex Reynolds ♦ 26k

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How to interpret the outputs generated from bamtobed using BedTools?

bedtools bed bam bamtobed written 3.4 years ago by Louis Kok • 10 • updated 3.4 years ago by Sukhdeep Singh ♦ 9.5k

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The issue is resolved. I made two changes. I don't know which one worked. 1. I had skipped the l...
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You can use liftover or CrossMap to switch between these two genome assembly version.
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[@genomax][1] I realised that as well. For a good sequencing run, I found that I discarded around...
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@finswimmer,I dont want to make the difference , but want to exclude 0|2,0|3 etc and keep only co...
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Thank you very much!
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You can get this info using the myvariant.info API. For example, suppose you are interested in S...
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Even when you can do the test by yourself, it's better if you use the tools already implement for...
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VDB is a database format to store "next-gen" sequencing data. See the handout [Using SRA Toolkit ...
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Hey I'm having this same problem, did you find a solution in the end? Cheers, Morgan
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Hi VKKodali, I am trying to find consensus between the full genome sequence not against the refer...
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> I thought Bio.PDB was automatically set up to get files from the PDB database I don't think...
C: Identifying consensus sequence between multiple Arabidopsis genome sequences by vkkodali • 700
NCBI has a few Arabidopsis genome assembly - assembly alignments [here](ftp://ftp.ncbi.nlm.nih.go...

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