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90,372 results • Page
1 of 1808
Sort: Rank
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0
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0
replies
1
view
Up-to-date GWAS Power Calculator and GWAS power comparison
GWAS
power
just now by
moxu
▴ 470
1
vote
3
replies
27
views
Plotting Differential Induced Genes across timepoints in DESEQ2
Bioconductor
DESEQ2
MA
RNA-seq
updated 12 minutes ago by
swbarnes2
9.7k • written 1 hour ago by
raisamathenge
▴ 10
0
votes
0
replies
6
views
Tool:
FileSlide.io - Annotating and distributing sequencing data from the web
data-distribution
data-annotation
data-sharing
23 minutes ago by
Simon
• 0
0
votes
5
replies
1.6k
views
How to highlight DE genes in plotMD ?
edgeR
plotMD
volcanoplot
mirnaseq
updated 31 minutes ago by
raulgcova97
• 0 • written 3.0 years ago by
Björn
▴ 50
1
vote
3
replies
34
views
Forum:
What to put in my Github
Github
updated 41 minutes ago by
ATpoint
47k • written 1 hour ago by
g_virdzek
• 0
0
votes
0
replies
8
views
What criteria follow in order to choose the crystaline structure of a molecule
Molecular
Docking
1 hour ago by
roybatty269
• 0
0
votes
1
reply
13
views
Quantify inactivated virus particles
virus
quantification
offtopic
updated 42 minutes ago by
ATpoint
47k • written 1 hour ago by
Josep Ollé
• 0
2
votes
2
replies
529
views
Recombination maps for cattle
SNP
IMPUTE2
genome
Assembly
updated 1 hour ago by
Azwan
• 0 • written 18 months ago by
mdyogolos
▴ 10
0
votes
1
reply
21
views
Samtools view filter by reference sequence
samtools
updated 2 hours ago by
Pierre Lindenbaum
135k • written 2 hours ago by
maxrwjones898
• 0
0
votes
0
replies
22
views
How exactly does diffBind count reads?
atacseq
diffbind
3 hours ago by
iamjli
▴ 10
1
vote
8
replies
283
views
Pacbio SRA data format error
Pacbio
SRA
bax2bam
isoseq3
updated 2 hours ago by
GenoMax
99k • written 6 weeks ago by
shounak.chakraborty1990
• 0
580
votes
155
replies
64k
views
89 follow
News:
The Biostar Handbook. A bioinformatics e-book for beginners.
handbook
tutorial
training
News
updated 2 days ago by
Biostar
10 • written 4.4 years ago by
Istvan Albert
87k
0
votes
0
replies
18
views
The effect of heterozygosity on genome alignment
heterozigosity
alignment
bwa
sequence
3 hours ago by
Iseez
• 0
1
vote
1
reply
95
views
vcftools intersect vs bedtools intersect
bedtools
vcf
vcftools
updated 3 hours ago by
Alex Reynolds
32k • written 22 hours ago by
gpen
• 0
0
votes
2
replies
46
views
Segmentation fault (core dumped) error in MUSCLE
NGS
alignment
fastq
linux
sequence
2 hours ago by
christopherjamessteel1990
• 0
0
votes
1
reply
41
views
Genome sequencing data analysis and assembly L.lactis subsp.lactis strain Lac3
well
updated 4 hours ago by
Mensur Dlakic
★ 10k • written 6 hours ago by
ipb727258
• 0
0
votes
1
reply
61
views
Is it bad practice to change threshold for interaction probability?
STRING
Cytoscape
updated 4 hours ago by
Carlo Yague
5.8k • written 1 day ago by
gemmalouisebaldock
▴ 10
2
votes
2
replies
44
views
bedops wig2bed 'Row begins with a tab or space' error
wig2bed
bedops
convert2bed
updated 3 hours ago by
Alex Reynolds
32k • written 5 hours ago by
a_bis
• 0
0
votes
0
replies
29
views
correlation analysis of a single variable versus multiple variables
correlation
r
RNA-Seq
updated 5 hours ago by
GenoMax
99k • written 5 hours ago by
pinheirofabiano
• 0
0
votes
0
replies
26
views
Demultiplexing Samples With Contaminated Hashtag
scRNAseq
seurat
demultiplexing
6 hours ago by
fouerghi20
▴ 30
0
votes
0
replies
25
views
News:
Noncoding RNA Conference: upcoming abstract deadline
ncRNA
conference
RNA
noncoding
6 hours ago by
rory.johnson
▴ 20
0
votes
2
replies
81
views
Variant calling from comparison of assembled genomes where there is only one read depth.
variant
updated 6 hours ago by
swbarnes2
9.7k • written 10 hours ago by
Hans
▴ 120
1
vote
0
replies
31
views
Holistic enzyme activity determination with computation
protein
enzymes
bioinformatics
proteomics
7 hours ago by
birbronald9
▴ 10
0
votes
5
replies
86
views
transcription factor activation order
transcription
updated 40 minutes ago by
ATpoint
47k • written 7 hours ago by
kenny
• 0
0
votes
0
replies
21
views
JoinMap4 makes a new map every time
joinmap
linkage_mapping
genetic_map
SNP
7 hours ago by
Beetle Editor
• 0
0
votes
0
replies
26
views
How to get all microRNA target genes?
miRNA
multimir
microRNA
targetgenes
tarbase
7 hours ago by
Katarina
• 0
0
votes
1
reply
50
views
LDSC -Genetic correlation, some results all have NA valuies
correlation
ldsc
genetic
gwas
updated 8 hours ago by
Sam
★ 3.4k • written 11 hours ago by
d.s.zimmerman
• 0
0
votes
1
reply
48
views
Can Meta-GWAS summary statistic results be used for Meta-GWAS (For example, METAL)?
METAL
input
Meta-analysis
Meta-GWAS
updated 8 hours ago by
Sam
★ 3.4k • written 12 hours ago by
li
• 0
4
votes
5
replies
183
views
Batch effect correction of 2 studies with different covariates
batch-effect
R
RNA-seq
5 hours ago by
Geo
▴ 20
0
votes
1
reply
60
views
How to get GO terms to specific to perticular biological process
GO
Enrichment
RNA-seq
updated 8 hours ago by
geneticatt
▴ 110 • written 11 hours ago by
BISEP
• 0
1
vote
1
reply
41
views
MemoryError w/ matrix | Smith-Waterman Algorithm Python
Matrix
Smith-Waterman
Python
Memory
Memory-Error
updated 8 hours ago by
Istvan Albert
87k • written 9 hours ago by
Daniel Bell
▴ 10
0
votes
0
replies
41
views
Job:
Informatician / Data Analyst | University of Glasgow
job
data-analyst
8 hours ago by
dariober
12k
1
vote
3
replies
158
views
IndexError: list assignment index out of range | Needleman-Wunsch Algorithm - Python
List
Needleman-Wunsch
Python
DynamicProgramming
updated 8 hours ago by
Istvan Albert
87k • written 3 days ago by
Daniel Bell
▴ 10
1
vote
0
replies
36
views
Violin Plot for Single-cell data, gene expression in different timepoints
violin-plot
gene-expression
R
single-cell
updated 9 hours ago by
GenoMax
99k • written 9 hours ago by
keren.danan
▴ 10
1
vote
2
replies
109
views
Pooling normal data in Mutect2
mutect2
pooling
normal
samples
panelofnormals
2 hours ago by
Michelle
• 0
0
votes
0
replies
33
views
Convert GFF3 to splice junction BED file, for filtering variants multi-sample (RNA-seq) VCF
rna
splice-junction
vcf
10 hours ago by
William
★ 4.8k
2
votes
3
replies
127
views
How to extract all columns of CSQ using split-vep plugin of bcftools?
plugin
samtools
bcftools
vcf
split-vep
updated 10 hours ago by
David Parry
▴ 60 • written 1 day ago by
dare_devil
★ 1.4k
0
votes
0
replies
38
views
integration of single cell RNA-seq and bulk RNA-seq data
RNA-seq
10 hours ago by
ramyak1912
• 0
1
vote
4
replies
101
views
how to extract REF and ALT DNA string around SNV
SNV
motif
9 hours ago by
shangguandong1996
▴ 10
0
votes
0
replies
35
views
GEMINI ISSUE
BIOINFORMATICS
GEMINI
updated 9 hours ago by
GenoMax
99k • written 11 hours ago by
shwetan
• 0
2
votes
0
replies
60
views
Forum:
Bioinformatics startup market analysis
startup
10 hours ago by
gtechbio
▴ 20
0
votes
0
replies
27
views
Minimum enrichment score to take for analysis
Sequencing
Rna-Seq
11 hours ago by
ashwing.kofficial
• 0
0
votes
4
replies
84
views
How to Estimate total variance in, and between RNA-seq datasets?
batch
variance
correction
8 hours ago by
Gabriel
▴ 90
0
votes
1
reply
48
views
Detection of bacterial SNP using regular PCR primers
detection
PCR
SNP
updated 11 hours ago by
David Parry
▴ 60 • written 11 hours ago by
Audrey
▴ 50
1
vote
3
replies
604
views
Can't change coefficient of dds object: error 'coef' should specify same coefficient as in results 'res'
DESeq2
RNA-seq
updated 4 hours ago by
ATpoint
47k • written 14 hours ago by
macielrodriguez2
▴ 30
0
votes
2
replies
133
views
How can I revert back the Ensembl vep annotated positions to vcf positions?
ensembl
VEP
VCF
updated 12 hours ago by
ATpoint
47k • written 2 days ago by
dare_devil
★ 1.4k
0
votes
0
replies
32
views
Negative branch length when using clustalw through Python and unable to see bootstrap values
clustalw
Phylogeny
bootstrap
Python
tree
14 hours ago by
minifoog
• 0
1
vote
3
replies
133
views
About combining the forward and reverse sequence
16srRNA
geneious
updated 10 hours ago by
GenoMax
99k • written 2 days ago by
ruddhida
• 0
1
vote
2
replies
122
views
cannot import name 'gcd' from 'fractions'
ubuntu
Linux
python
multiqc
3 hours ago by
h.gaikani
• 0
66
votes
40
replies
21k
views
22 follow
Tutorial:
Extract Total Non-Overlapping Exon Length Per Gene With Bioconductor
rna-seq
bioconductor
fpkm
Forum
Tutorial
updated 15 hours ago by
vel
• 0 • written 7.5 years ago by
Irsan
★ 7.3k
90,372 results • Page
1 of 1808
Recent Votes
Comment: Finding how many times a nucleotide appear in the same position
Plotting Differential Induced Genes across timepoints in DESEQ2
Answer: What to put in my Github
Comment: Meaning of BWA-MEM MAPQ values
A: Detecting highly variable genes within replicates
A: Detecting highly variable genes within replicates
Answer: Pooling normal data in Mutect2
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Comment: What Coverage allele-fraction threshold to use?
by
kristina.mahan
▴ 130
The sequencing coverage is >200x
Answer: Plotting Differential Induced Genes across timepoints in DESEQ2
by
swbarnes2
9.7k
I don't think you need the "1" in the design; I've never seen that in any DESeq tutorial. What your design will do is compare the betas …
Comment: Plotting Differential Induced Genes across timepoints in DESEQ2
by
raisamathenge
▴ 10
![Here is my ColData][1] [1]: /media/images/f2f1b815-3669-4525-9636-c6dc193e
Answer: How to highlight DE genes in plotMD ?
by
raulgcova97
• 0
Hi I managed to **add DE tags to the plotMD** using the code I published on Kaggle: [Kaggle DE analysis][1] Here is an example of the co…
Comment: transcription factor activation order
by
ATpoint
47k
Calculating statistics, be it Z- or whatever score, is still based on some kind of data, and I wonder whether it is motifs or actual bindin…
Comment: What to put in my Github
by
ATpoint
47k
Seconding that. I strongly encourage everyone to wrap commonly used code and functions as simple packages and put them on Github. This allo…
Comment: Quantify inactivated virus particles
by
ATpoint
47k
This post is off topic as not bioinformatics-related. I suggest you ask this in a suitable subreddit or at ResearchGate (or similar platfor…
Comment: Plotting Differential Induced Genes across timepoints in DESEQ2
by
ATpoint
47k
Can you show your `colData` to understand how the groups are set up?
Comment: Finding how many times a nucleotide appear in the same position
by
Pierre Lindenbaum
135k
cross posted: https://stackoverflow.com/questions/67060118/
Comment: What to put in my Github
by
GenoMax
99k
Since this is an open-ended question I am changing it to `Forum`. > I am not allowed to release my scripts or data Unless you are doing s…
Answer: What to put in my Github
by
jared.andrews07
9.2k
Yes, I think analyzing publicly available data is perfectly fine. Trying to reproduce their findings (or find something they perhaps missed…
Comment: Recombination maps for cattle
by
Azwan
• 0
Hi did you found it?
Comment: How can I create an Illumina report in Linux using IDAT files?
by
freeseek
▴ 120
You can look at the full content of a GTC file with the following command: ``` bcftools +gtc2vcf -v <file.gtc> ```
Answer: Samtools view filter by reference sequence
by
Pierre Lindenbaum
135k
get the complement BED use `bedtools complement` and the scan the bam using samtools view -L complement.bed
Comment: How can I create an Illumina report in Linux using IDAT files?
by
freeseek
▴ 120
After you have converted your IDATs to GTCs using Illumina's iaap-cli command, the following command will produce a GenomeStudio-like table…
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