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4
votes
1
answer
93
views
1
answer
Merge coordinates by gene ID
bedtools bed bedops bash written 3 days ago by r.tor • 40
0
votes
0
answers
40
views
0
answers
DeepMAsED installation and dependencies
deepmased scipy tensorflow bash written 2 days ago by v.berriosfarias • 0
0
votes
0
answers
79
views
0
answers
Making disjoint chromosomal sites contiguous with awk
assembly sequence awk bioinformatics bash written 8 days ago by selplat21 • 10
10
votes
3
answers
158
views
5 follow
3
answers
Remove rows with duplicate values based on two columns
R snp-dists snp bash written 10 days ago by marit.hetland • 40 • updated 10 days ago by zx8754 ♦ 9.7k
0
votes
2
answers
407
views
2
answers
Subsetting GFF3 files for gene models using Bash
genome annotation bash gff3 braker2 written 8 months ago by geneticatt • 20 • updated 12 days ago by zhanglong_6 • 0
1
vote
1
answer
99
views
1
answer
bowtie2 using loop on bash with paired-ended reads
bowtie2 sequence alignment bash written 12 days ago by v.berriosfarias • 0 • updated 12 days ago by swbarnes2 ♦ 8.9k
2
votes
2
answers
213
views
5 follow
2
answers
How to multiply all columns of a .csv table with a constant extracted from another table?
bash written 21 days ago by deep771992chanda • 10 • updated 18 days ago by davidattenboroughcbd • 0
1
vote
1
answer
72
views
1
answer
Change a column name according to the file name
bash written 24 days ago by dpc • 150 • updated 24 days ago by RamRS ♦ 30k
7
votes
1
answer
217
views
1
answer
How to generate reverse complement for the fasta sequences specified in the given csv file?
perl python bash shell fasta written 4 weeks ago by Dineshkumar K • 40
0
votes
1
answer
121
views
1
answer
Using GNU Parallel to read arguments into a bash script
parallel gnu bash written 4 weeks ago by SaltedPork • 110
2
votes
1
answer
154
views
1
answer
How to edit fasta headers to keep only ID and organism?
edit fasta headers bash written 5 weeks ago by Audrey • 20 • updated 5 weeks ago by Pablo Marin-Garcia • 1.8k
1
vote
2
answers
128
views
2
answers
BASH Finding Common Elements
bash written 5 weeks ago by bioinformatics98 • 0 • updated 5 weeks ago by Joe ♦ 18k
3
votes
2
answers
109
views
2
answers
how to speed up blastx run on slurm HPC
hpc unix bash written 5 weeks ago by Bioinfonext • 250 • updated 5 weeks ago by Mensur Dlakic • 6.9k
0
votes
0
answers
316
views
7 follow
0
answers
BWA mem and Samtools sort in Bash script
alignment samtools bwa bash written 3 months ago by Vladislav • 10 • updated 6 weeks ago by Biostar ♦♦ 20
3
votes
0
answers
191
views
0
answers
how to get total read count, mapped read count and unmapped read count from multiple sam or bam files
rnaseq R bash phython written 7 weeks ago by Bioinfonext • 250
2
votes
1
answer
161
views
1
answer
Length of scaffolds in a FASTA file
fasta genome scaffold bash written 7 weeks ago by Begonia_pavonina • 20 • updated 7 weeks ago by cpad0112 ♦ 14k
0
votes
0
answers
137
views
0
answers
How to convert gbk file to roary tool acceptable gff3 format?
perl python linux bioinformatics bash written 7 weeks ago by Dineshkumar K • 40
4
votes
1
answer
172
views
1
answer
convert tsv to csv format
shell bash written 8 weeks ago by smrutimayipanda • 10 • updated 8 weeks ago by Mensur Dlakic • 6.9k
0
votes
2
answers
135
views
2
answers
How to remove a break line \n in awk when print the result
bash awk download assembly linux written 8 weeks ago by xatabadich • 0 • updated 8 weeks ago by Pierre Lindenbaum ♦ 131k
0
votes
1
answer
163
views
1
answer
Concatenation and Gzip Compression of Beagle Files Slow
sequencing next-gen unix bash written 10 weeks ago by selplat21 • 10 • updated 8 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
123
views
1
answer
how to change column header based on the second file column
R bash unix linux written 8 weeks ago by Bioinfonext • 250 • updated 8 weeks ago by Pierre Lindenbaum ♦ 131k
1
vote
1
answer
134
views
1
answer
Batching fastq download w/sra-toolkit: Won't recognize IDs
sra-toolkit rna-seq bash written 9 weeks ago by harka14 • 0
1
vote
1
answer
129
views
1
answer
Rename and move Spades assemblies in batch
batch spades bash written 9 weeks ago by jellila • 0 • updated 9 weeks ago by Asaf ♦ 8.4k
1
vote
0
answers
260
views
0
answers
No space left on device error with deeptools bamCompare
software error deeptools picard terminal bash written 3 months ago by jennxyzhang • 0 • updated 9 weeks ago by Biostar ♦♦ 20
3
votes
2
answers
169
views
2
answers
How to check if a word is present in a column of a .ped file
ped bash written 9 weeks ago by Nuthatch • 0 • updated 9 weeks ago by chrchang523 ♦ 7.3k
4
votes
1
answer
141
views
1
answer
Downloading gene sequences for a list of genes using E-utilities
ncbi genome linux rna-seq bash written 9 weeks ago by Bioinfonext • 250
6
votes
2
answers
140
views
5 follow
2
answers
How to rename file titles that contain underscores?
underscores file titles bash written 10 weeks ago by Audrey • 20
2
votes
1
answer
271
views
1
answer
Error in npm installation and start.
software error python linux R bash written 11 weeks ago by Dineshkumar K • 40 • updated 11 weeks ago by h.mon ♦ 31k
5
votes
1
answer
134
views
6 follow
1
answer
How to correct a wrong protein extraction from FASTA file?
fasta protein extraction bash written 11 weeks ago by Audrey • 20 • updated 11 weeks ago by Shalu Jhanwar • 470
11
votes
2
answers
289
views
8 follow
2
answers
How to extract identical characters in multiple text files?
.txt identical characters bash written 11 weeks ago by Audrey • 20 • updated 11 weeks ago by Joe ♦ 18k
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