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<prev • 386 results • page 1 of 13 • next >
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Mutual Information for a collection of FASTA files
fasta python bash sequence mutualinformation written 11 weeks ago by nameuser • 30
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votes
1
answer
75
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1
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bash find consecutive acc. no. & insert text
ncbi efetch bash acc.no. written 6 days ago by 6schulte • 20
1
vote
1
answer
117
views
1
answer
Pipelines in bash vs other languages
python pipeline bash written 14 days ago by jaynishshah • 0
15
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4
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210
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7 follow
4
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How to extract a sequence below a fasta header (">") from a fasta file ?
fasta bash written 11 days ago by v.berriosfarias • 10 • updated 10 days ago by ATpoint ♦ 44k
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2
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102
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how to filter sequence database with bash?
fasta database sequencing grep bash written 16 days ago by Lisa Prudnikow • 0 • updated 16 days ago by Jorge Amigo ♦ 12k
5
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1
answer
179
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1
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Get the top X number of lines per unique value in one column, once you've sorted a text file using 'sort'
bash shell sort written 18 days ago by niccolo.alfano • 0 • updated 18 days ago by GenoMax ♦ 94k
3
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1
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132
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1
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Help with parallelization and loop cutadapt
loop bash cutadapt written 4 weeks ago by russell.stewart.j • 10 • updated 4 weeks ago by Dave Carlson • 420
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2
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147
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7 follow
2
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Merging same one column different files
merge bash written 5 weeks ago by melania 2282 • 100 • updated 5 weeks ago by Pierre Lindenbaum ♦ 133k
6
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2
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176
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2
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How to extract header from within the data (line of a file)
data processing data extraction bash written 6 weeks ago by 6schulte • 20
1
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1
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150
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1
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Extracting values with certain patterns by searching all columns for each line using "awk"
awk unix bash written 6 weeks ago by ClkElf • 30 • updated 6 weeks ago by Pierre Lindenbaum ♦ 133k
2
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1
answer
164
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1
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Merging lots of csv files in on master one
csv bash written 7 weeks ago by psschlogl • 30 • updated 7 weeks ago by steve • 2.7k
4
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4
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6.4k
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10 follow
4
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Faster way to get GC content and Coverage from .fasta
genome fasta next-gen sequencing bash written 2.9 years ago by Shred • 230 • updated 7 weeks ago by mendozamejian • 0
4
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1
answer
168
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1
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Blast run fails: memory exceeds the limit
blastx blast bash written 8 weeks ago by langziv • 0 • updated 8 weeks ago by Mensur Dlakic • 8.1k
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104
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Tools to find similarity and identity via terminal or ubuntu
genome alignment bash sequencing linux written 9 weeks ago by projetoic • 0
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110
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locuszoom on a HPC - LD could not be computed for SNP
hpc locuszoom gwas bash written 9 weeks ago by tacrolimus • 80
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1
answer
125
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1
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how can I write a script for calculate snp variants coverage
genomecoverage variantcoverage script bash written 9 weeks ago by tacidilceren • 0
3
votes
1
answer
187
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1
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Masking Y chromosomes
genome whole generation sequencing wgs bash written 10 weeks ago by lamia_203 • 90 • updated 10 weeks ago by Jorge Amigo ♦ 12k
1
vote
1
answer
188
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1
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How to use a bash variable in awk calculation
bash awk written 10 weeks ago by nadarajan_v • 0 • updated 10 weeks ago by lieven.sterck ♦ 9.5k
2
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2
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307
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2
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How to execute curl with dynamically created URL using Bash
bash written 10 weeks ago by nadarajan_v • 0 • updated 10 weeks ago by zorbax • 230
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164
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How to remove low abundance and less prevalent data from my dataset?
metagenome bash written 10 weeks ago by deep771992chanda • 30
4
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1
answer
167
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1
answer
where to practise bash
bash learning programming written 10 weeks ago by gubrins • 60 • updated 10 weeks ago by JC ♦ 12k
3
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1
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194
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1
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filtering column based on column header from a file
R bash linux written 10 weeks ago by Bioinfonext • 320 • updated 10 weeks ago by Sam • 3.3k
2
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1
answer
124
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1
answer
Filter files based on number in the filenames
regex bash written 11 weeks ago by vanessagpds • 10 • updated 11 weeks ago by zx8754 ♦ 9.9k
1
vote
1
answer
131
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1
answer
Bulk extraction of cis-elements (TFBS) from Softberry output
python bash written 11 weeks ago by venura • 60
4
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1
answer
184
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1
answer
Merge coordinates by gene ID
bedtools bed bedops bash written 12 weeks ago by r.tor • 40
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166
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DeepMAsED installation and dependencies
deepmased scipy tensorflow bash written 12 weeks ago by v.berriosfarias • 10
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174
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Making disjoint chromosomal sites contiguous with awk
assembly sequence awk bioinformatics bash written 3 months ago by selplat21 • 20
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3
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238
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5 follow
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Remove rows with duplicate values based on two columns
R snp-dists snp bash written 3 months ago by marit.hetland • 40 • updated 3 months ago by zx8754 ♦ 9.9k
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2
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562
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Subsetting GFF3 files for gene models using Bash
genome annotation bash gff3 braker2 written 11 months ago by geneticatt • 40 • updated 3 months ago by zhanglong_6 • 0
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bowtie2 using loop on bash with paired-ended reads
bowtie2 sequence alignment bash written 3 months ago by v.berriosfarias • 10 • updated 3 months ago by swbarnes2 ♦ 9.4k
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