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<prev • 245 results • page 1 of 9 • next >
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How to subset a set of variations from a VCF on specific chromosome and between 2 postions?
vcf subset awk bash written 5 days ago by Defne • 0 • updated 4 days ago by finswimmer ♦ 11k
3
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1
answer
67
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1
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BWA script on partially executes
alignment pbs bash written 5 days ago by matthew.dambrosio.1 • 0 • updated 5 days ago by Philipp Bayer ♦ 6.1k
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2
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97
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2
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replace content of a column by the content of a variable
grep bash awk written 10 days ago by amandinelecerfdefer • 0
5
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1
answer
108
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1
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print non match to list lines of GTF file
grep bash awk written 10 days ago by Sam • 110
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2
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77
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5 follow
2
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Calculating dinucleotide frequencies for each sequence in a multi fasta file
fasta R linux dinucleotide bash written 10 days ago by emilyc • 0 • updated 10 days ago by trausch • 1.3k
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62
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News: Training in genomics workflows for computational novices
bash tutorial cloud training news workshop written 13 days ago by ebecker • 0 • updated 13 days ago by ATpoint ♦ 17k
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1
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159
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1
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Bash not finding file
debian9 bash linux written 22 days ago by mac03pat • 10
6
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0
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256
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7 follow
0
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Tutorial: Bash One-liners collection on Github
bash-oneliners tutorial bash shell linux bioinformatics written 4 weeks ago by nim.1111.ou • 70 • updated 22 days ago by stephannie.baker8 • 0
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2
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6 follow
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Extract and retain only chromosome info in GWAS sumstats file
bash sed gwas sumstats munging awk written 23 days ago by camerond • 70 • updated 23 days ago by shawn.w.foley • 710
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143
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5 follow
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Rename FASTA headers based on filename
bash written 25 days ago by SaltedPork • 100 • updated 25 days ago by SMK • 1.3k
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1
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120
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1
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Rename fasta headers from CSV
perl python bash written 25 days ago by SaltedPork • 100 • updated 25 days ago by SMK • 1.3k
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1
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274
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1
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Tool: Shell script to automate trimmomatic for multiple samples
trimmomatic tool shell bash written 5 weeks ago by Vijay Lakhujani ♦ 4.1k
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107
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News: Spaces left on Bioinformatics Workflows with Snakemake Course
workflows news course snakemake bash written 5 weeks ago by Edinburgh Genomics Training • 30
3
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1
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141
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1
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Bash: updating file by duplicating lines
command line bash for loops linux written 6 weeks ago by Tasneem Fetian • 0 • updated 6 weeks ago by h.mon ♦ 25k
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151
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News: Training - Bioinformatics with Bash and Python
python news bash bioinformatics programming written 6 weeks ago by carlopecoraro2 • 920
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3
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191
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7 follow
3
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compare two columns of two files
awk bash written 7 weeks ago by Sam • 110 • updated 7 weeks ago by brett.vanderwerff • 120
14
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3
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243
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3
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How to merge multiple fastq file using table?
fastq cat bash written 8 weeks ago by rimgubaev • 120
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0
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97
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0
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HISAT2 question (hisat2_extract_splice_sites )
rna-seq bash written 8 weeks ago by zhu.ge • 0
1
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1
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159
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1
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[solved]bcftools breaks in for loop
vcf bcftools bash bcf for-loop written 11 weeks ago by maximilian.mayerhofer • 20
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3
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191
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6 follow
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Number of read with fastq file name
linux bash written 11 weeks ago by Bioinfonext • 150 • updated 11 weeks ago by Vijay Lakhujani ♦ 4.1k
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116
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Reducing Number of Data Points for Circos Histogram
alignment circos rna-seq bash written 12 weeks ago by joshua.eunsong.craig • 0 • updated 12 weeks ago by ATpoint ♦ 17k
3
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2
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134
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2
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Modify BED with poliregions
bed bash awk written 3 months ago by v82masae • 130 • updated 3 months ago by Pierre Lindenbaum ♦ 120k
0
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1
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190
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1
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Using entrez-direct inside a for loop in bash
ncbi bash written 3 months ago by Lille My • 30 • updated 3 months ago by genomax ♦ 68k
0
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0
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155
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0
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CD-hit records matching and parsing
python cd-hit text processing bioinformatics bash written 3 months ago by mnmalash • 0
1
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171
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Extract several parts from fasta header
fasta grep sed unix bash written 3 months ago by rah • 20
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2
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193
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2
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Bash script iterating over 2 arrays
loops multiple arrays script bash written 3 months ago by mdriskil • 10
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146
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Bash: selecting directory and fasta files from assembly
assembly .fasta unix bash written 3 months ago by rah • 20
5
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1
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232
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1
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Bash: For loop with two statements, first statements as input to second with .fasta files
sequence for-loop bash .fasta assembly written 3 months ago by rah • 20
1
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0
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300
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Can HISAT2 be invoked in bash shell, and can it be fed variables or names with wildcards as inputs?
hisat2 shell batch jobs wild cards bash written 3 months ago by RNAseqer • 110 • updated 3 months ago by RamRS ♦ 21k
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1
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188
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how to run mscore in bash?
mscore aligment bash written 4 months ago by MichaelTrev • 10
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