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<prev • 186 results • page 1 of 7 • next >
4
votes
2
answers
178
views
2
answers
If a string appears twice in column 1, select the higher value in column 2
awk bash written 8 weeks ago by drkennetz • 340 • updated 13 hours ago by zx8754 ♦ 4.9k
1
vote
1
answer
1.8k
views
1
answer
Can't sort gff file ordered by chromosome (ch1,chr2,chr3......chrX).
next-gen rna-seq bash written 2.6 years ago by unique379 • 50 • updated 3 days ago by Ram ♦ 17k
3
votes
1
answer
62
views
1
answer
How do I read a logfile?
next-gen galaxy logfile bash written 12 days ago by cedrickclarido • 0 • updated 12 days ago by Devon Ryan ♦ 84k
9
votes
1
answer
220
views
5 follow
1
answer
Editing fasta headers with bash
fasta script fasta headers bash written 14 days ago by James • 10 • updated 14 days ago by jrj.healey ♦ 6.7k
13
votes
4
answers
171
views
7 follow
4
answers
Splitting a fasta file based on the number of headers.
fasta python bash written 15 days ago by sicat.paolo20 • 20 • updated 15 days ago by Alex Reynolds ♦ 25k
6
votes
3
answers
176
views
3
answers
How to extract certain tag value by key from sam/bam file?
awk linux samtools sam bash written 17 days ago by yech1990 • 20 • updated 17 days ago by Pierre Lindenbaum ♦ 112k
2
votes
2
answers
95
views
2
answers
Fred's metabarcoding pipeline : Build the OTU table / keyerror in python script
metabarcoding python vsearch ubuntu bash written 21 days ago by jojo_ezz • 10 • updated 19 days ago by Frédéric Mahé • 2.8k
7
votes
1
answer
145
views
1
answer
Subset of genes with at least 1 intron larger than 5000 kbp
gtf R intron_length genomicfeatures bash written 22 days ago by shania90.lk • 10
2
votes
1
answer
217
views
1
answer
download refseq of thousand of assembly file from NCBI
wget fasta refseq bash written 22 days ago by Shelle • 0
4
votes
1
answer
233
views
1
answer
Could someone explain this perl command?
perl bash written 29 days ago by Seq225 • 50
7
votes
3
answers
198
views
6 follow
3
answers
featureCounts and bash
featurecounts rna-seq bash written 5 weeks ago by cilgaiscan • 30 • updated 5 weeks ago by jkkim • 20
4
votes
1
answer
165
views
1
answer
Why when splitting file in two we add 1 line before dividing the number of lines by 2?
commandline split bash written 5 weeks ago by salamandra • 170
3
votes
1
answer
547
views
5 follow
1
answer
Retrieve directory structure of ftp.ncbi - python or bash
python bash written 20 months ago by andrewsanchez • 10 • updated 6 weeks ago by Alex Reynolds ♦ 25k
2
votes
1
answer
162
views
1
answer
Modify IOT formated VCF by the most frequent variant
vcf R snp bash written 9 weeks ago by joangibert14 • 0
12
votes
3
answers
848
views
5 follow
3
answers
Extract rows present in file1 and not in file 2
gene awk bash written 19 months ago by biostarsb • 20 • updated 9 weeks ago by zx8754 ♦ 4.9k
28
votes
5
answers
755
views
7 follow
5
answers
How to make bash script operate fast for a 13gb VCF.gz file with 900000 rows and 10000 fields?
vcf bash written 9 weeks ago by DK • 70 • updated 9 weeks ago by Pierre Lindenbaum ♦ 112k
2
votes
2
answers
144
views
2
answers
How to download latest human AGP chromosome files (no alts, MT, unplaced, unlocalized) from NCBI?
assembly bash hg38 human agp written 11 weeks ago by eroberts • 0 • updated 11 weeks ago by cpad0112 • 8.8k
3
votes
2
answers
251
views
2
answers
text file editing
awk bash written 11 weeks ago by Sam • 70 • updated 11 weeks ago by Pierre Lindenbaum ♦ 112k
4
votes
1
answer
220
views
1
answer
convert Trinotate resulte to GFF file
annotation rna-seq bash written 12 weeks ago by Mostafa Mahmoud • 0
9
votes
2
answers
172
views
2
answers
Obtain sequences that did not appear in your fasta file
genome perl ngs unix bash written 12 weeks ago by sicat.paolo20 • 20 • updated 12 weeks ago by Pierre Lindenbaum ♦ 112k
4
votes
2
answers
179
views
2
answers
Remove extra sequences without unique names from fasta
fasta duplicates sequence uniq bash written 3 months ago by nmkn • 0 • updated 3 months ago by Pierre Lindenbaum ♦ 112k
10
votes
1
answer
413
views
5 follow
1
answer
Nested for loop in Bash
sequencing loop next-gen bash written 3 months ago by owenz • 10
1
vote
1
answer
140
views
1
answer
Change nexus textlabels
R nexus tree bash written 3 months ago by User000 • 250 • updated 3 months ago by Anima Mundi • 2.3k
5
votes
1
answer
323
views
1
answer
How to sort lines in a file based on listing in another file using loop "while read line"
bash written 8 months ago by yreynaud • 0
0
votes
1
answer
1.1k
views
1
answer
Pandaseq in a bash for-loop - Error nofile
pandaseq for-loop linux myposts bash written 2.7 years ago by fibar • 50 • updated 4 months ago by mxm2623 • 0
3
votes
2
answers
216
views
2
answers
listing library names
bash written 4 months ago by Sam • 70 • updated 4 months ago by genomax ♦ 55k
20
votes
6
answers
436
views
11 follow
6
answers
changing the name of files
bash awk written 4 months ago by Sam • 70 • updated 4 months ago by shenwei356 ♦ 4.1k
2
votes
0
answers
155
views
0
answers
Download all KEGG genomes
genome kegg bash written 4 months ago by Melinda • 0
3
votes
0
answers
250
views
0
answers
Is it possible to append in first line of my output.txt the name of folder? (in this case PDB code)
pdb bash script linux written 4 months ago by cc • 20
3
votes
1
answer
230
views
1
answer
arranging columns and rows
grep awk bash written 5 months ago by Ambika • 20 • updated 5 months ago by Pierre Lindenbaum ♦ 112k
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