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<prev • 161 results • page 1 of 6 • next >
3
votes
1
answer
85
views
1
answer
arranging columns and rows
grep awk bash written 4 days ago by Ambika • 20 • updated 4 days ago by Pierre Lindenbaum ♦ 106k
0
votes
1
answer
400
views
1
answer
Script error when extracting sequences of a list of orthologous groups
software error orthomcl blast bash written 13 months ago by Santiago Montero-Mendieta • 90 • updated 7 days ago by ahmedmagds • 0
2
votes
0
answers
116
views
0
answers
How to make the script work with stringtie command first and then merge the outputs?
stringtie bash merge rna-seq linux written 17 days ago by beginner • 20 • updated 17 days ago by h.mon ♦ 13k
1
vote
1
answer
106
views
1
answer
Merging list of bam files with samtools merge
python samtools bash written 18 days ago by Bella_p • 50 • updated 18 days ago by h.mon ♦ 13k
5
votes
2
answers
184
views
6 follow
2
answers
Error in samtools view
samtools bash chip-seq bowtie2 written 23 days ago by Bella_p • 50 • updated 23 days ago by Pierre Lindenbaum ♦ 106k
4
votes
1
answer
92
views
5 follow
1
answer
Save .sam file in a target directory
chip-seq bowite2 bash written 23 days ago by Bella_p • 50
6
votes
2
answers
117
views
5 follow
2
answers
searching for genes included in the file name
bash written 25 days ago by lessismore • 470 • updated 25 days ago by Paul • 1.0k
1
vote
1
answer
107
views
1
answer
merge table with gene ID and names
R bash awk written 26 days ago by lessismore • 470
3
votes
1
answer
198
views
6 follow
1
answer
common sequence between multi fasta file
bash written 28 days ago by Sam • 50
4
votes
2
answers
159
views
2
answers
reformat a gene association file
R bash awk written 4 weeks ago by lessismore • 470 • updated 4 weeks ago by h.mon ♦ 13k
0
votes
1
answer
158
views
1
answer
sort FASTA file into table
fasta bioinformatics bash written 4 weeks ago by a.bolbukova.12 • 0 • updated 4 weeks ago by Pierre Lindenbaum ♦ 106k
1
vote
2
answers
207
views
2
answers
How to remove duplicate rows and keep highest values only for a gene list with scores
R bash written 5 weeks ago by lessismore • 470 • updated 5 weeks ago by arta • 410
7
votes
2
answers
138
views
7 follow
2
answers
How to extract genes 10000 bp upstream and 1000 bp downstream of long non coding RNA?
bedtools bedops awk sed bash written 5 weeks ago by bhuwankhatri11 • 20 • updated 5 weeks ago by Alex Reynolds ♦ 23k
2
votes
3
answers
242
views
6 follow
3
answers
Faster way to get GC content and Coverage from .fasta
genome fasta next-gen sequencing bash written 7 weeks ago by danilo.tatoni • 30 • updated 5 weeks ago by cpad0112 • 4.4k
3
votes
1
answer
209
views
1
answer
Why command gives the error: extra operand 23243?
commandline comm bash written 5 weeks ago by salamandra • 110
1
vote
1
answer
145
views
1
answer
How to input multiple files from a list of files
bash rna-seq linux written 5 weeks ago by Goku • 0 • updated 5 weeks ago by Alex Reynolds ♦ 23k
0
votes
0
answers
105
views
0
answers
Command line to add algorithm option for MAFFT using GUIDANCE2
alignment bash written 6 weeks ago by NicoN64 • 0
1
vote
1
answer
140
views
1
answer
Bash Script Loop Help
rnaseq loop bash written 6 weeks ago by V • 60
31
votes
4
answers
270
views
9 follow
4
answers
Getting a bash pipeline to output non-zero exit code when a step fails
bash sh command-line written 7 weeks ago by SaltedPork • 70 • updated 7 weeks ago by bernatgel • 1.0k
2
votes
2
answers
769
views
2
answers
cutadapt loop and paired-end reads
paired-end cutadapt loop rna-seq bash written 11 months ago by sbrown669 • 20 • updated 8 weeks ago by montoya.oscar • 40
7
votes
2
answers
156
views
2
answers
How to convert string into fasta using bash?
fasta perl string bash written 9 weeks ago by SaltedPork • 70 • updated 9 weeks ago by Pierre Lindenbaum ♦ 106k
9
votes
3
answers
179
views
3
answers
Any ideas on converting IUPAC ambiguity codes in a fasta file
fasta iupac regex perl bash written 9 weeks ago by SaltedPork • 70 • updated 9 weeks ago by st.ph.n • 2.2k
3
votes
1
answer
137
views
1
answer
Looping local blastn in bash
blast bash written 9 weeks ago by maximilian.mayerhofer • 20 • updated 9 weeks ago by Pierre Lindenbaum ♦ 106k
4
votes
1
answer
266
views
6 follow
1
answer
Naive BASH question on top to bottom programming regarding my alignment script
unix bash written 10 weeks ago by datascientist28 • 320
1
vote
0
answers
156
views
0
answers
How to run SNPEff jar for a batch of VCF files using GNU parallel tool?
software variant calling snpeff gnu parallel bash written 10 weeks ago by oxfordsoccer • 10
2
votes
1
answer
239
views
1
answer
Cannot reproduce BLAST results returned by the WEB API on the shell-based BLAST+ 2.7.1
ncbi blast shell bash written 11 weeks ago by xerygi • 10
0
votes
1
answer
159
views
1
answer
Bash skript for mafft alignment
fasta alignment bash written 12 weeks ago by ArusjakGevorgyan • 20 • updated 12 weeks ago by Pierre Lindenbaum ♦ 106k
3
votes
1
answer
184
views
1
answer
How to sort lines in a file based on listing in another file using loop "while read line"
bash written 3 months ago by yreynaud • 0
3
votes
2
answers
173
views
2
answers
Formatting problem gene table conversion
python awk bash written 3 months ago by lessismore • 470 • updated 3 months ago by ReWeeda • 30
2
votes
1
answer
257
views
1
answer
How to delete all but a certain pattern using sed
sed bash written 3 months ago by arsilan324 • 40 • updated 3 months ago by Pierre Lindenbaum ♦ 106k
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