Showing: bashreset
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Calculate CG content in a fastq file
rna-seq bash written 9 hours ago by luzglongoria0 • updated 7 hours ago by finswimmer7.0k
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84
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0
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5
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1
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184
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awk and sed in bash script and no output
bash sed awk written 5 days ago by bk1130 • updated 5 days ago by Alex Reynolds26k
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1
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70
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1
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3
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1
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127
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1
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Bash: salmon command not found
salmon rna-seq bash written 12 days ago by ab12340
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2
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178
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5 follow
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combine columns from multiple files
bash written 14 days ago by bk1130 • updated 13 days ago by cpad011210k
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176
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Filter VCF with bash commands
vcf grep awk bash written 14 days ago by ajuiwl30 • updated 14 days ago by dariober9.7k
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145
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5 follow
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1
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1
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119
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1
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Looping over vcf files
linux bash written 6 weeks ago by paolo00260 • updated 18 days ago by zx87545.7k
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152
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6
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146
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4
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85
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Can I get AddOrReplaceReadGroups working for multiple files?
picard tools bash written 22 days ago by James Reeve30 • updated 22 days ago by b.d23730
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7 follow
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Bash scripting FastQC for multiple fastq files in multiple directories
bash rna-seq fastqc written 25 days ago by rc125320 • updated 25 days ago by Paul1.2k
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3
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210
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compare two file to retrieve common lines
bash awk written 26 days ago by Sam80
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1
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186
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1
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Xscore Installation Issue using Bash
installation csh c shell xscore bash written 7 weeks ago by Neuls0 • updated 26 days ago by John Marshall1.4k
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4
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172
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5 follow
4
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20
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493
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9 follow
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manipulating a file by R or bash?
text parsing R bash written 4 weeks ago by Za120 • updated 4 weeks ago by Chirag Parsania1.2k
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2
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139
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compare two tables in files
perl linux bash written 6 weeks ago by erickfqqa10 • updated 5 weeks ago by cpad011210k
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198
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cut columns in txt tab separated file
R linux bash written 8 weeks ago by ulises.rodriguez0 • updated 8 weeks ago by RamRS19k
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224
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If a string appears twice in column 1, select the higher value in column 2
awk bash written 4 months ago by drkennetz360 • updated 9 weeks ago by zx87545.7k
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Can't sort gff file ordered by chromosome (ch1,chr2,chr3......chrX).
next-gen rna-seq bash written 2.7 years ago by unique37950 • updated 9 weeks ago by RamRS19k
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1
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107
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1
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How do I read a logfile?
next-gen galaxy logfile bash written 10 weeks ago by c.clarido40 • updated 10 weeks ago by Devon Ryan86k
9
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1
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328
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5 follow
1
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Editing fasta headers with bash
fasta script fasta headers bash written 11 weeks ago by James20 • updated 11 weeks ago by jrj.healey8.8k
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4
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261
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7 follow
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Splitting a fasta file based on the number of headers.
fasta python bash written 11 weeks ago by sicat.paolo2020 • updated 11 weeks ago by Alex Reynolds26k
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3
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311
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How to extract certain tag value by key from sam/bam file?
awk linux samtools sam bash written 11 weeks ago by yech199020 • updated 11 weeks ago by Pierre Lindenbaum114k
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176
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355
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4
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1
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279
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Could someone explain this perl command?
perl bash written 3 months ago by Seq22570
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298
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6 follow
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featureCounts and bash
featurecounts rna-seq bash written 3 months ago by cilgaiscan30 • updated 3 months ago by jkkim20
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