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<prev • 335 results • page 1 of 12 • next >
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Correct use of bash wildcards
wildcards bash written 23 hours ago by caro-ca • 20 • updated 18 hours ago by Mensur Dlakic • 6.0k
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41
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How to filter microbial genome based on genome ID
genome bash microbial linux written 1 day ago by Bioinfonext • 220
3
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1
answer
79
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8 follow
1
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Nest 2 for loops in a single command line
for loops bash written 2 days ago by caro-ca • 20 • updated 2 days ago by 2nelly • 210
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72
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BWA MEM output directory
directory bwa bash written 8 days ago by sarastrafella.ss • 0 • updated 8 days ago by Kevin Blighe ♦ 63k
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1
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3.6k
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1
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Extract files with xxx_somenumber_yyyy.zzz.vcf
files bash extract xargs written 5.8 years ago by shanika.amarasinghe • 30 • updated 8 days ago by Biostar ♦♦ 20
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Error in pan-genome-analysis tool panX.
genome bioinformatics python perl bash written 9 days ago by Dineshkumar K • 40 • updated 9 days ago by genomax ♦ 87k
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1
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115
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1
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How to remove poor quality sequences from a fasta file?
perl python bash shell fasta written 10 days ago by Dineshkumar K • 40
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207
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7 follow
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BWA mem and Samtools sort in Bash script
alignment samtools bwa bash written 15 days ago by Vladislav • 10 • updated 15 days ago by Prakash • 1.9k
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2
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132
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How to add column to table with awk
bed-files awk unix shell bash written 17 days ago by linelr • 10 • updated 17 days ago by Shalu Jhanwar • 350
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2
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153
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2
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awk column number is a variable
awk rna-seq bash written 17 days ago by DBScan • 20 • updated 17 days ago by user_without_id • 140
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2
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169
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2
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assigning the values in matrix in bash
microarray bash written 22 days ago by smrutimayipanda • 10
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121
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No space left on device error with deeptools bamCompare
software error deeptools picard terminal bash written 21 days ago by jennxyzhang • 0
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1
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105
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1
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Failed to merge BAM files
samtools bash written 23 days ago by Ric • 300 • updated 23 days ago by Shalu Jhanwar • 350
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84
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Problem in subsetting a gtf based on ids in another file
gtf grep slurm shell bash written 24 days ago by newbie • 70
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106
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STAR multiple FASTQ alignment, can you use with a variable $?
alignment variable star rna-seq bash written 24 days ago by science_lizard • 0
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3
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138
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5 follow
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How do I use bash loop to map with Salmon on files in multiple folders
loop mapping rna-seq bash written 25 days ago by n.tear • 20 • updated 25 days ago by ole.tange • 3.8k
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241
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5 follow
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FeatureCounts output does not contain all the genes in the annotation file
rnaseq rice featurecounts bash written 9 weeks ago by devbt15 • 10
3
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1
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113
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1
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Motif search on a DNA sequence in a gff file (ipdSummary output)
python gff ipdsummary motif bash written 5 weeks ago by gabri • 50 • updated 5 weeks ago by Joe ♦ 17k
3
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1
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97
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1
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Sorting BLAST file
blast bash written 5 weeks ago by stan.aanhane • 30 • updated 5 weeks ago by Giovanni.madrigal12 • 170
1
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1
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626
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1
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MSA ID replacement with a list ID
python bash awk written 2.8 years ago by lessismore • 890 • updated 5 weeks ago by Biostar ♦♦ 20
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1
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162
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1
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Merge fastq files
fastq bash merge concatenate unix written 5 weeks ago by BM • 60 • updated 5 weeks ago by Asaf ♦ 8.3k
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5 follow
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Command line to add algorithm option for MAFFT using GUIDANCE2
alignment bash written 2.4 years ago by NicoN64 • 20 • updated 5 weeks ago by milesdroberts • 0
1
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1
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223
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1
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Rename sample names in g.vcf files fails [Error Segmentation fault (core dumped) ]
vcf gatk bcftools snp bash written 4 months ago by ekwame • 40
2
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1
answer
113
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1
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Error setting up BUSCO for loop
for loop busco syntax error bash written 8 weeks ago by jamie.pike • 20
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1
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172
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1
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How to remove characters after specific symbol from all columns, and make all charachters sperated by space and comma except the first column
bash written 9 weeks ago by haneenih7 • 70 • updated 9 weeks ago by RamRS ♦ 28k
1
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168
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Bash script problem
bedtools bash written 10 weeks ago by valastesolutions • 0 • updated 10 weeks ago by lieven.sterck ♦ 8.2k
1
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120
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0
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Split up a matrix into chunks considering the values of a column in Bash
shell bash written 10 weeks ago by r.tor • 40
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1
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116
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1
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How to extract the longest protein per gene from a multifast file.
proteome bash python written 11 weeks ago by johnmarondon11 • 0 • updated 11 weeks ago by Mensur Dlakic • 6.0k
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1
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129
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1
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per sample mean coverage and standard deviation
bash awk written 12 weeks ago by ijlal.hyder2012 • 10 • updated 12 weeks ago by husensofteng • 260
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160
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bash bowtie script output with prefix
bash unix script written 3 months ago by Amaranta Remedios • 10 • updated 12 weeks ago by Joe ♦ 17k
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