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Correct use of bash wildcards
wildcards bash written 23 hours ago by caro-ca20 • updated 18 hours ago by Mensur Dlakic6.0k
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Nest 2 for loops in a single command line
for loops bash written 2 days ago by caro-ca20 • updated 2 days ago by 2nelly210
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BWA MEM output directory
directory bwa bash written 8 days ago by sarastrafella.ss0 • updated 8 days ago by Kevin Blighe63k
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Extract files with xxx_somenumber_yyyy.zzz.vcf
files bash extract xargs written 5.8 years ago by shanika.amarasinghe30 • updated 8 days ago by Biostar ♦♦ 20
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Error in pan-genome-analysis tool panX.
genome bioinformatics python perl bash written 9 days ago by Dineshkumar K40 • updated 9 days ago by genomax87k
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BWA mem and Samtools sort in Bash script
alignment samtools bwa bash written 15 days ago by Vladislav10 • updated 15 days ago by Prakash1.9k
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How to add column to table with awk
bed-files awk unix shell bash written 17 days ago by linelr10 • updated 17 days ago by Shalu Jhanwar350
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awk column number is a variable
awk rna-seq bash written 17 days ago by DBScan20 • updated 17 days ago by user_without_id140
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Failed to merge BAM files
samtools bash written 23 days ago by Ric300 • updated 23 days ago by Shalu Jhanwar350
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How do I use bash loop to map with Salmon on files in multiple folders
loop mapping rna-seq bash written 25 days ago by n.tear20 • updated 25 days ago by ole.tange3.8k
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Motif search on a DNA sequence in a gff file (ipdSummary output)
python gff ipdsummary motif bash written 5 weeks ago by gabri50 • updated 5 weeks ago by Joe17k
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Sorting BLAST file
blast bash written 5 weeks ago by stan.aanhane30 • updated 5 weeks ago by Giovanni.madrigal12170
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MSA ID replacement with a list ID
python bash awk written 2.8 years ago by lessismore890 • updated 5 weeks ago by Biostar ♦♦ 20
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Merge fastq files
fastq bash merge concatenate unix written 5 weeks ago by BM60 • updated 5 weeks ago by Asaf8.3k
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Command line to add algorithm option for MAFFT using GUIDANCE2
alignment bash written 2.4 years ago by NicoN6420 • updated 5 weeks ago by milesdroberts0
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Bash script problem
bedtools bash written 10 weeks ago by valastesolutions0 • updated 10 weeks ago by lieven.sterck8.2k
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How to extract the longest protein per gene from a multifast file.
proteome bash python written 11 weeks ago by johnmarondon110 • updated 11 weeks ago by Mensur Dlakic6.0k
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per sample mean coverage and standard deviation
bash awk written 12 weeks ago by ijlal.hyder201210 • updated 12 weeks ago by husensofteng260
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bash bowtie script output with prefix
bash unix script written 3 months ago by Amaranta Remedios10 • updated 12 weeks ago by Joe17k
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