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concatenating FASTQ forward and reverse reads in Snakemake
reads fastq forward concatenate bash written 12 hours ago by Hansen_869 • 0 • updated 11 hours ago by Eric Lim • 1.4k
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115
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sh: warning: setlocale: LC_ALL: cannot change locale (en_US.utf8)
perl bwa bash written 3 days ago by kspata • 60 • updated 2 days ago by Joe ♦ 14k
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71
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Inserting bash and bioinformatic's scripts into browser database
python java browser script bash written 7 days ago by flogin • 150
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85
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1
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How to print lines of two file where column 2 and 3 of File 1 fall in between column 2 and 3 of file 2
python awk bash written 8 days ago by akinyemiibukun • 20 • updated 8 days ago by Pierre Lindenbaum ♦ 122k
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77
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How to generate a combined read count txt file with header as file name
R bash awk linux written 10 days ago by Bioinfonext • 160
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120
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News: Programming with Bash and Python
python news programming unix bash written 11 days ago by carlopecoraro2 • 1.2k
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205
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5 follow
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HOW TO remove all spaces except first space with semicolon
bash linux written 18 days ago by Bioinfonext • 160
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3
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168
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6 follow
3
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Convert a two-column file to a single file with interlayed rows
fasta bash sequence awk paste written 5 weeks ago by JGuVa • 10
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100
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1
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Failure in running samtools within Julia
julia language samtools bash written 5 weeks ago by marongiu.luigi • 380
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230
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1
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Extract specific genes from a FASTA file.
gene fasta tutorial sequence bash written 8 weeks ago by alexandru.bologa.marian • 0 • updated 8 weeks ago by Asaf ♦ 6.1k
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1
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308
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error while downloading taxonomy using E-utilities
software error ncbi amplicon sequencing bash written 8 weeks ago by Bioinfonext • 160 • updated 8 weeks ago by genomax ♦ 71k
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2
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128
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2
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.bash_profile shortcut to reverse a string
terminal bash written 8 weeks ago by johan • 50 • updated 8 weeks ago by ATpoint ♦ 23k
2
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1
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163
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1
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How to calculate the ratio of nucleotide diversity (pi) between two population in each window
R bash population genetics written 9 weeks ago by haneenih7 • 20 • updated 9 weeks ago by benformatics • 1.1k
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145
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News: Do you want to improve your programming skills?
python news bash unix programming written 10 weeks ago by carlopecoraro2 • 1.2k
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191
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7 follow
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new file with line in common
bash awk written 10 weeks ago by amandinelecerfdefer • 20
3
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1
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225
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1
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Error: [bwa_idx_load_from_disk] fail to locate index
software error bwa bash written 10 weeks ago by kchenforyou • 0 • updated 10 weeks ago by Kevin Blighe ♦ 48k
3
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2
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475
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how to download all sequences from web link
bash linux written 11 weeks ago by Bioinfonext • 160
2
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136
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1
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bash script for writing the files name and path, and directions of read
bash written 11 weeks ago by Bioinfonext • 160 • updated 11 weeks ago by shenwei356 ♦ 4.8k
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1
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125
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How to use extractfeat in bash to obtain feature tags values ?
emboss bash written 11 weeks ago by kA • 0 • updated 11 weeks ago by Pierre Lindenbaum ♦ 122k
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174
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1
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How to subset a set of variations from a VCF on specific chromosome and between 2 postions?
vcf subset awk bash written 3 months ago by Defne • 0
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141
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Automating the creation of IGV style histogram coverage maps
genome R alignment python bash written 3 months ago by cxr5298 • 20 • updated 3 months ago by dariober ♦ 10k
3
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1
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136
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1
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BWA script on partially executes
alignment pbs bash written 3 months ago by matthew.dambrosio.1 • 0 • updated 3 months ago by Philipp Bayer ♦ 6.4k
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161
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replace content of a column by the content of a variable
grep bash awk written 3 months ago by amandinelecerfdefer • 20
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1
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190
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1
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print non match to list lines of GTF file
grep bash awk written 3 months ago by Sam • 120
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2
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180
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5 follow
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Calculating dinucleotide frequencies for each sequence in a multi fasta file
fasta R linux dinucleotide bash written 3 months ago by emilyc • 10 • updated 3 months ago by trausch • 1.4k
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142
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News: Training in genomics workflows for computational novices
bash tutorial cloud training news workshop written 3 months ago by ebecker • 0 • updated 3 months ago by ATpoint ♦ 23k
5
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1
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226
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Bash not finding file
debian9 bash linux written 3 months ago by mac03pat • 10
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472
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7 follow
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Tutorial: Bash One-liners collection on Github
bash-oneliners tutorial bash shell linux bioinformatics written 4 months ago by nim.1111.ou • 70 • updated 3 months ago by stephannie.baker8 • 0
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127
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6 follow
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Extract and retain only chromosome info in GWAS sumstats file
bash sed gwas sumstats munging awk written 3 months ago by camerond • 100 • updated 3 months ago by shawn.w.foley • 1.0k
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Rename FASTA headers based on filename
bash written 4 months ago by SaltedPork • 100 • updated 4 months ago by SMK • 1.8k
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