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3
votes
2
answers
39
views
2
answers
How to split a string and swap the result in bash
string text split bash written 4 hours ago by gary.napier • 0 • updated 2 hours ago by wm • 370
2
votes
1
answer
107
views
1
answer
Why is hmmsearch only using the 1st HMM in a concatenated HMM database?
protein domain hmmer hmm script bash written 1 day ago by O.rka • 170 • updated 1 day ago by Mensur Dlakic • 4.3k
0
votes
1
answer
1.4k
views
1
answer
parallel bwa mem with compressed fastq.bz2 files
bzip2 bwa-mem linux bwa bash written 17 months ago by Amirosein • 70 • updated 5 days ago by hsiaoyi0504 • 50
3
votes
1
answer
151
views
5 follow
1
answer
Problem trying to convert from .gtf to .fasta file
rna-seq bash written 5 weeks ago by nattzy94 • 20 • updated 11 days ago by saadbadday • 10
4
votes
2
answers
174
views
2
answers
Editing fastq file
fastq bash written 14 days ago by agata • 0 • updated 14 days ago by Istvan Albert ♦♦ 83k
0
votes
1
answer
80
views
1
answer
How to pass a variable to vcftools --weir-fst-pop
fst vcftools bash written 28 days ago by gary.napier • 0
0
votes
0
answers
129
views
0
answers
How to input variable into pubmed -esearch function
bash pubmed written 4 weeks ago by nattzy94 • 20
0
votes
0
answers
72
views
0
answers
HMMSCAN error in batch submission
hmm script bash written 5 weeks ago by geizetomazetto • 0
0
votes
1
answer
121
views
1
answer
Subsetting GFF3 files for gene models using Bash
genome annotation bash gff3 braker2 written 7 weeks ago by geneticatt • 0 • updated 7 weeks ago by lieven.sterck ♦ 7.3k
6
votes
1
answer
3.9k
views
1
answer
Fasta to axt - KaKs Calculator
perl R kaks python bash written 5.0 years ago by tlorin • 260 • updated 7 weeks ago by Biostar ♦♦ 20
7
votes
0
answers
165
views
6 follow
0
answers
How to pass arguments in a bash script to perform read alignment to the reference?
exome data analysis bwa bash written 7 weeks ago by Karma • 270
5
votes
0
answers
106
views
0
answers
Catching error "QueryKey value not found in link output" when fetching taxonomy from NCBI
ncbi R efetch bash error_handling written 7 weeks ago by Freddy • 20 • updated 7 weeks ago by Asaf ♦ 7.3k
3
votes
1
answer
142
views
1
answer
grep sorting question
grep awk sed unix bash written 7 weeks ago by rbronste • 340 • updated 7 weeks ago by RamRS ♦ 26k
2
votes
1
answer
101
views
1
answer
Merge columns adding conditions for every row
genes code rna-seq bash written 7 weeks ago by miriam.riquelmep • 0 • updated 7 weeks ago by genomax ♦ 80k
6
votes
1
answer
111
views
1
answer
Merging many files with having same columns with bash script
bash written 8 weeks ago by melania 2282 • 70 • updated 8 weeks ago by Pierre Lindenbaum ♦ 127k
0
votes
2
answers
112
views
2
answers
Filter SNPs in multiple-sample vcf based on the snps of two samples
vcf filter bash snp linux written 9 weeks ago by e.taylorcox • 0
4
votes
2
answers
151
views
2
answers
How to parse sequences from a gbk file, based on the coordinates specified in given file?
perl python bash gbk written 10 weeks ago by Dineshkumar K • 30 • updated 10 weeks ago by vkkodali • 1.9k
0
votes
0
answers
93
views
0
answers
Multiple commands in a for loop
genome loops sequence unix bash written 12 weeks ago by lamia_203 • 70
0
votes
2
answers
137
views
2
answers
automate command using bash or perl script?
perl assembly rast bash written 12 weeks ago by sharmatina189059 • 40 • updated 12 weeks ago by JC ♦ 9.7k
1
vote
2
answers
185
views
2
answers
Create txt file in a for loop
loop bash linux written 3 months ago by Ati • 30 • updated 3 months ago by padwalmk • 80
0
votes
1
answer
125
views
1
answer
Order file based on another file
R bash written 3 months ago by haneenih7 • 60
1
vote
1
answer
154
views
5 follow
1
answer
Extract text between delimiters and use it to rename the same file
linux shell bash written 3 months ago by akansha.gitanjali • 10 • updated 3 months ago by RamRS ♦ 26k
3
votes
1
answer
139
views
1
answer
Unique lines among 200 files
ngs bash written 3 months ago by User000 • 290 • updated 3 months ago by Pierre Lindenbaum ♦ 127k
2
votes
0
answers
233
views
0
answers
Results of two sequential bash pipes into a variable instead of a file?
bash variable script shell pipe written 6 months ago by normanreppingen • 0 • updated 4 months ago by Biostar ♦♦ 20
4
votes
2
answers
203
views
2
answers
How to separate a big file into smaller ones using linux commands?
linux bash written 4 months ago by akansha.gitanjali • 10 • updated 4 months ago by Pierre Lindenbaum ♦ 127k
0
votes
0
answers
144
views
0
answers
RNAseq read mapping statistics from sam file
hisat2 rna-seq bash written 4 months ago by Bioinfonext • 200
0
votes
0
answers
125
views
0
answers
Creating a marker file for copy number analysis
R genomics bash written 4 months ago by A • 3.7k
3
votes
2
answers
554
views
5 follow
2
answers
combine columns from multiple files
bash written 17 months ago by bk11 • 40 • updated 4 months ago by rse • 90
2
votes
1
answer
153
views
1
answer
Data clustering / matching enteries
python bash written 4 months ago by nandelvibhuti • 0 • updated 4 months ago by Alex Reynolds ♦ 29k
5
votes
2
answers
313
views
2
answers
Filter unique SNPs (rows) in VCF/text file
vcf snp bash written 4 months ago by evelyn • 90 • updated 4 months ago by zx8754 ♦ 9.1k
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