Showing: bashreset
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107
votes
9
answers
78k
views
52 follow
9
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Useful Bash Commands To Handle Fasta Files
fasta list command-line bash written 7.5 years ago by Anima Mundi2.4k • updated 22 months ago by jrj.healey13k
62
votes
5
answers
3.0k
views
10 follow
5
answers
What Are The Bioinformatics-Related Aliases Or Functions In Your Bashrc
bash written 7.2 years ago by brentp23k • updated 7.2 years ago by Andreas2.4k
32
votes
3
answers
7.9k
views
13 follow
3
answers
Picking Random Genomic Positions
perl bedtools bash written 7.1 years ago by PoGibas4.8k
4
votes
1
answer
3.5k
views
1
answer
Using Bash For Gatk Pipeline
gatk script bash written 5.6 years ago by Paul1.3k
7
votes
0
answers
2.0k
views
0
answers
16
votes
1
answer
2.1k
views
1
answer
20
votes
6
answers
831
views
11 follow
6
answers
changing the name of files
bash awk written 15 months ago by Sam120 • updated 15 months ago by shenwei3564.8k
6
votes
0
answers
407
views
7 follow
0
answers
Tutorial: Bash One-liners collection on Github
bash-oneliners tutorial bash shell linux bioinformatics written 3 months ago by nim.1111.ou70 • updated 12 weeks ago by stephannie.baker80
16
votes
1
answer
8.8k
views
7 follow
1
answer
Calling Python Script From Bash Console While Using Gnu Parallel
python parallel bash written 8.0 years ago by NPalopoli280 • updated 8.0 years ago by tange190
15
votes
3
answers
6.3k
views
9 follow
3
answers
How To Remove The Comments From A List Of Fasta Sequences
fasta awk bash written 7.5 years ago by Anima Mundi2.4k • updated 7.5 years ago by Frédéric Mahé2.9k
3
votes
3
answers
1.2k
views
3
answers
Print First Occurence Of A Line
perl fasta awk bash written 6.4 years ago by federico.gaiti70 • updated 6.4 years ago by Kenosis1.2k
17
votes
6
answers
12k
views
11 follow
6
answers
Printing Reverse Complement Of Dna In Single-Line Perl
perl sequence bash written 6.3 years ago by soosus80 • updated 3.4 years ago by winter_li40
1
vote
0
answers
1.2k
views
0
answers
5
votes
1
answer
5.0k
views
5 follow
1
answer
R1 R2 orientation (RNA-seq)
htseq pipeline rna-seq bash written 5.2 years ago by biotech540
23
votes
3
answers
2.8k
views
3
answers
Bash tutorial for biologists?
tutorial bash written 4.3 years ago by Parham1.4k • updated 4.3 years ago by Josh Herr5.6k
1
vote
2
answers
1.7k
views
2
answers
Efficient means of mass converting Affy SNP IDs to dbSNP rs ids
perl python affy dbsnp bash written 4.2 years ago by devenvyas580 • updated 3.8 years ago by stolarek.ir600
10
votes
2
answers
1.9k
views
2
answers
Generating shell scripts
shell bash written 3.8 years ago by ebrown1955300 • updated 3.8 years ago by Pierre Lindenbaum122k
31
votes
4
answers
2.2k
views
4
answers
Job Manager to parallelize otherwise consecutive bash scripts..?
parallel xargs bash written 3.6 years ago by John12k • updated 3.6 years ago by ole.tange3.5k
5
votes
2
answers
1.1k
views
2
answers
bash for loop with two type of files
for loop bash written 3.5 years ago by mbk0asis460 • updated 3.5 years ago by piet1.7k
2
votes
1
answer
994
views
1
answer
Creating a consensus based on 'x' number of fasta files
perl alignment sequence bash written 3.4 years ago by matthew.m.hernandez30 • updated 3.4 years ago by Pierre Lindenbaum122k
3
votes
1
answer
802
views
5 follow
1
answer
Retrieve directory structure of ftp.ncbi - python or bash
python bash written 2.6 years ago by andrewsanchez10 • updated 12 months ago by Alex Reynolds28k
17
votes
3
answers
885
views
8 follow
3
answers
why does this pipe work
software error bash written 2.3 years ago by nkinney0630 • updated 2.3 years ago by John12k
5
votes
3
answers
5.8k
views
6 follow
3
answers
bash script for RNA seq alignment with STAR
bash star rna-seq script written 2.0 years ago by nicole p20 • updated 24 months ago by mforde841.2k
11
votes
1
answer
5.8k
views
7 follow
1
answer
Tutorial: Removing rows with duplicate values based on 1 or more key values - linux awk
duplicates tutorial linux awk bash written 23 months ago by Kevin Blighe46k • updated 23 months ago by Alex Reynolds28k
1
vote
1
answer
448
views
1
answer
How to input multiple files from a list of files
bash rna-seq linux written 17 months ago by Goku10 • updated 17 months ago by Alex Reynolds28k
7
votes
2
answers
560
views
7 follow
2
answers
9
votes
1
answer
1.5k
views
7 follow
1
answer
Bash scripting FastQC for multiple fastq files in multiple directories
bash rna-seq fastqc written 9 months ago by rc125320 • updated 9 months ago by Paul1.3k
8
votes
1
answer
570
views
7 follow
1
answer
6
votes
2
answers
113
views
6 follow
2
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Extract and retain only chromosome info in GWAS sumstats file
bash sed gwas sumstats munging awk written 12 weeks ago by camerond70 • updated 12 weeks ago by shawn.w.foley840
2
votes
1
answer
2.8k
views
1
answer
Opening Vcf File With Vcftools
vcf bash command-line vcftools written 8.1 years ago by J88810 • updated 8.0 years ago by Mdeng510
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