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13
votes
3
answers
577
views
9 follow
3
answers
about batch correction in scRNA-seq
batch correction scrna scrnaseq written 6 months ago by Bogdan • 970 • updated 4 weeks ago by niuyw • 30
0
votes
2
answers
437
views
2
answers
Does Harmony batch correction for scRNA-seq require the same populations to be present in all samples?
scrna-seq single-cell batch correction harmony written 5 months ago by Lucy • 40
2
votes
1
answer
581
views
5 follow
1
answer
Harmony batch correction vs. regressing out donor effect in Seurat
scrna-seq harmony seurat rna-seq batch correction written 5 months ago by Lucy • 40 • updated 5 months ago by jared.andrews07 ♦ 5.3k
2
votes
2
answers
329
views
2
answers
Using FPKM and TPM values for batch correction for Single Cell RNA-Seq
scrna-seq batch correction fpkm tpm rna-seq written 6 months ago by hkarakurt • 90 • updated 6 months ago by shoujun.gu • 290
6
votes
0
answers
326
views
0
answers
How to assess RNA-Seq batch correction success?
batch correction deseq2 combat limma rna-seq written 10 months ago by borkk • 90
2
votes
1
answer
237
views
1
answer
Can we directly use batch corrected gene expression (Bulk RNA-seq) for further downstream analyses?
batch correction rna-seq written 11 months ago by tigeradab • 50 • updated 11 months ago by kristoffer.vittingseerup • 3.0k
1
vote
1
answer
472
views
1
answer
Batch correction and DE analysis of miRNA Seq data
batch correction diffrential expression mirnaseq written 12 months ago by anshulmbi • 10 • updated 12 months ago by cfos4698 • 140
0
votes
0
answers
781
views
0
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Differential expression using Scran batch corrected data
single-cell batch correction scran rna-seq written 16 months ago by baldissera152 • 10
0
votes
1
answer
1.5k
views
1
answer
Batch correction (mass spectrometry data)
biostatistics R sva combat batch correction written 3.4 years ago by mkhadka10 • 0
7
votes
1
answer
4.1k
views
1
answer
Combat normalization returns negative values
batch correction sva combat rna-seq R written 4.2 years ago by lahat.albert • 60 • updated 4.2 years ago by mamunbabu2001 • 40
3
votes
0
answers
1.7k
views
0
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Batch Correction and Batch Size
batch correction batch adjustment microarray written 5.4 years ago by tasjfasfankihj • 10
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