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3
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115
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Advice on Handling Batch Effect in ChIP-seq Experiment
replicates sequencing chip-seq batch effect batch written 8 days ago by dmj6ab • 10
3
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2
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2.2k
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2
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Compute a identity matrix from an alignment - command line approach for batch processing
alignment identity batch written 2.7 years ago by fhsantanna • 440 • updated 15 days ago by gadget • 0
0
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1
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257
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1
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Can we use previous estimated ComBat model to correct batch effects for new data?
batch effect microarray rna-seq batch written 5 months ago by Minstein • 110 • updated 5 months ago by Kevin Blighe ♦ 48k
0
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0
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391
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0
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Experimental design RNAseq differential expression
rna-seq edger limma differential expression batch written 6 months ago by Pietro • 90 • updated 5 months ago by Biostar ♦♦ 20
0
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0
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1.9k
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0
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svaseq and combat
combat sva effect batch written 2.3 years ago by Folder40g • 120 • updated 6 months ago by liull_hust • 0
1
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0
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180
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0
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Filtering Genes / Batch Correction
gene R rna-seq batch written 6 months ago by shinobee • 40
0
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1
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286
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1
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batch effect Deseq2 Wald test
deseq2 wald test rna-seq batch written 7 months ago by mariannapauletto • 20 • updated 7 months ago by Devon Ryan ♦ 92k
2
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1
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466
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1
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Question regarding Batch removal in single cell RNA seq data
rna-seq scrnaseq batch written 9 months ago by xiaominren0118 • 0 • updated 9 months ago by kristoffer.vittingseerup • 2.3k
5
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1
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358
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6 follow
1
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Perl/Python script for batch download mRNA sequences for multiple genes
mrna batch written 11 months ago by Shicheng Guo • 7.7k • updated 11 months ago by Carambakaracho • 1.6k
2
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1
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2.1k
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1
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Lmer() for RNA-seq with batch as random effect: how to prepare input?
lmer mixed model rna-seq batch written 3.6 years ago by Ekarl2 • 90 • updated 12 months ago by RamRS ♦ 24k
1
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1
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1.2k
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1
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Batch query of ancestral and derived alleles from Ensemble
ancestral allele ensembl snp batch written 3.7 years ago by Mr Locuace • 90 • updated 12 months ago by linnaean • 0
1
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1
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1.4k
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1
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Command line blast atlas
command line blast atlas batch written 4.5 years ago by Lee Katz • 2.9k • updated 13 months ago by ropolocan • 600
3
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1
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559
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1
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Batch and combining reads from two flow cells for the same ChIP/ATAC-seq library
illumina combine atac-seq chip-seq batch written 15 months ago by reskejak • 20 • updated 15 months ago by Devon Ryan ♦ 92k
0
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0
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376
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0
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How to download FASTA file from psRNAtarget
fasta sequence script download batch written 16 months ago by ebrahimi.re67 • 0
4
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1
answer
857
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1
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How to specify columns in Uniprot batch query from Uniprot IDs?
perl proteinid uniprot batch written 18 months ago by Solowars • 50 • updated 18 months ago by Elisabeth Gasteiger • 1.6k
0
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0
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513
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0
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Batch Annotation of Bacterial Gene Clusters
annotation gene cluster batch written 19 months ago by kayrouz.1 • 0
0
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1
answer
903
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1
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Doubt about batch effect and gene expression analysis
gene expression limma batch written 20 months ago by Picasa • 470 • updated 20 months ago by Kevin Blighe ♦ 48k
1
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0
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760
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0
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Remove batch effect from exome data
exome exome sequencing ngs batch effect batch written 23 months ago by Alternative • 230
7
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1
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1.6k
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6 follow
1
answer
HHpred batch submission
hhpred fasta sequence batch written 2.2 years ago by dhalaa1 • 20 • updated 2.2 years ago by Joe ♦ 14k
0
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0
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894
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0
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Workflow for removing batch effect between different studies: meta-analysis
batch meta-analysis filtering microarray written 2.5 years ago by ali.hassan.nehme • 0
2
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0
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773
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0
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Batch conservation analysis
conservation fasta batch genome written 2.6 years ago by chrys • 40
0
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0
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972
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0
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Batch correction without changing the data in the first batch
R chip microarray batch written 2.7 years ago by erfan741 • 40
0
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0
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1.8k
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0
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SVA + DESEQ2 : Looking for batcheffect in RNA-SEQ
sva deseq2 rna-seq batch written 2.8 years ago by ZheFrench • 250
0
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2
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6.9k
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5 follow
2
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Help creating .sqn file using tbl2asn to submit multiple sequences to Genbank
sequence genbank tbl2asn submit batch written 5.4 years ago by jolespin • 120 • updated 2.9 years ago by lizardburns • 0
0
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0
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1.1k
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0
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edgeR User Guide batch effect question
correlation edger batch written 3.0 years ago by Assa Yeroslaviz • 1.2k
1
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1
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813
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1
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Return the Title and URL of ~100 pubmed queries to a flat file
query pubmed batch written 3.1 years ago by Vincent Laufer • 1.1k
1
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1
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923
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1
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Help with preparing sequences for structure prediction
bash structure prediction itasser php batch written 3.5 years ago by Ali HEBRA • 0 • updated 3.5 years ago by RamRS ♦ 24k
0
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1
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1.9k
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1
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Downloading multiple PDB sequences
pdb download batch written 3.8 years ago by Bioaln • 310 • updated 3.8 years ago by Nestor Wendt • 100
6
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1
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2.4k
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1
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Correcting batch effects between RPKM datasets?
rpkm batch rna-seq dge written 4.2 years ago by JacobS • 900 • updated 4.1 years ago by Ying W • 3.9k
6
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1
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7.3k
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1
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How to remove batch effect from RNA-seq data?
sva deseq2 combat rna-seq batch written 4.2 years ago by alesssia • 520 • updated 4.2 years ago by Michael Love • 1.9k
<prev • 34 results • page 1 of 2 • next >
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