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Can we use previous estimated ComBat model to correct batch effects for new data?
batch effect microarray rna-seq batch written 10 days ago by Minstein • 70 • updated 9 days ago by Kevin Blighe ♦ 41k
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224
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Experimental design RNAseq differential expression
rna-seq edger limma differential expression batch written 4 weeks ago by Pietro • 50 • updated 24 days ago by Biostar ♦♦ 20
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1.5k
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svaseq and combat
combat sva effect batch written 23 months ago by Folder40g • 120 • updated 5 weeks ago by liull_hust • 0
1
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106
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Filtering Genes / Batch Correction
gene R rna-seq batch written 6 weeks ago by shinobee • 40
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1
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161
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1
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batch effect Deseq2 Wald test
deseq2 wald test rna-seq batch written 10 weeks ago by mariannapauletto • 0 • updated 10 weeks ago by Devon Ryan ♦ 89k
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1
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243
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1
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Question regarding Batch removal in single cell RNA seq data
rna-seq scrnaseq batch written 4 months ago by xiaominren0118 • 0 • updated 4 months ago by kristoffer.vittingseerup • 1.7k
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1
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259
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6 follow
1
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Perl/Python script for batch download mRNA sequences for multiple genes
mrna batch written 6 months ago by Shicheng Guo • 7.4k • updated 6 months ago by Carambakaracho • 1.0k
2
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1
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1.8k
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1
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Lmer() for RNA-seq with batch as random effect: how to prepare input?
lmer mixed model rna-seq batch written 3.2 years ago by Ekarl2 • 90 • updated 7 months ago by RamRS ♦ 21k
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1
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1.1k
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1
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Batch query of ancestral and derived alleles from Ensemble
ancestral allele ensembl snp batch written 3.3 years ago by Mr Locuace • 90 • updated 7 months ago by linnaean • 0
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1
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1.3k
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1
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Command line blast atlas
command line blast atlas batch written 4.1 years ago by Lee Katz • 2.9k • updated 8 months ago by ropolocan • 510
3
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1
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427
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1
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Batch and combining reads from two flow cells for the same ChIP/ATAC-seq library
illumina combine atac-seq chip-seq batch written 10 months ago by reskejak • 10 • updated 10 months ago by Devon Ryan ♦ 89k
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263
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How to download FASTA file from psRNAtarget
fasta sequence script download batch written 11 months ago by ebrahimi.re67 • 0
4
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1
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688
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1
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How to specify columns in Uniprot batch query from Uniprot IDs?
perl proteinid uniprot batch written 13 months ago by Solowars • 40 • updated 13 months ago by Elisabeth Gasteiger • 1.6k
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410
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Batch Annotation of Bacterial Gene Clusters
annotation gene cluster batch written 14 months ago by kayrouz.1 • 0
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1
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692
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1
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Doubt about batch effect and gene expression analysis
gene expression limma batch written 15 months ago by Picasa • 390 • updated 15 months ago by Kevin Blighe ♦ 41k
1
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0
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658
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Remove batch effect from exome data
exome exome sequencing ngs batch effect batch written 18 months ago by Alternative • 230
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1
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1.2k
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5 follow
1
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HHpred batch submission
hhpred fasta sequence batch written 21 months ago by dhalaa1 • 20 • updated 21 months ago by jrj.healey ♦ 12k
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0
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766
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Workflow for removing batch effect between different studies: meta-analysis
batch meta-analysis filtering microarray written 2.1 years ago by ali.hassan.nehme • 0
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0
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695
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Batch conservation analysis
conservation fasta batch genome written 2.2 years ago by chrys • 40
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Batch correction without changing the data in the first batch
R chip microarray batch written 2.3 years ago by erfan741 • 30
3
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1
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1.9k
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1
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Compute a identity matrix from an alignment - command line approach for batch processing
alignment identity batch written 2.3 years ago by fhsantanna • 440
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1.6k
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0
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SVA + DESEQ2 : Looking for batcheffect in RNA-SEQ
sva deseq2 rna-seq batch written 2.4 years ago by ZheFrench • 210
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2
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6.5k
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5 follow
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Help creating .sqn file using tbl2asn to submit multiple sequences to Genbank
sequence genbank tbl2asn submit batch written 5.0 years ago by jolespin • 120 • updated 2.4 years ago by lizardburns • 0
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1.0k
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edgeR User Guide batch effect question
correlation edger batch written 2.6 years ago by Assa Yeroslaviz • 1.2k
1
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1
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735
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1
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Return the Title and URL of ~100 pubmed queries to a flat file
query pubmed batch written 2.7 years ago by Vincent Laufer • 1.0k
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1
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847
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1
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Help with preparing sequences for structure prediction
bash structure prediction itasser php batch written 3.1 years ago by Ali HEBRA • 0 • updated 3.1 years ago by RamRS ♦ 21k
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1
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1.8k
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1
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Downloading multiple PDB sequences
pdb download batch written 3.4 years ago by Bioaln • 300 • updated 3.4 years ago by Nestor Wendt • 100
6
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1
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2.2k
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1
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Correcting batch effects between RPKM datasets?
rpkm batch rna-seq dge written 3.8 years ago by JacobS • 890 • updated 3.7 years ago by Ying W • 3.9k
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1
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6.9k
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1
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How to remove batch effect from RNA-seq data?
sva deseq2 combat rna-seq batch written 3.8 years ago by alesssia • 510 • updated 3.8 years ago by Michael Love • 1.8k
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1.2k
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Downloading multiple queries from dbSNP?
gene snp batch written 3.8 years ago by Bioaln • 300 • updated 3.8 years ago by Steven Lakin • 1.4k
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