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<prev • 36 results • page 1 of 2 • next >
0
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55
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Removing batch effect from GEO database
geo effect batch written 11 days ago by eric.palanques • 0 • updated 11 days ago by Kevin Blighe ♦ 52k
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55
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Correct for batch effect in miRNA sequencing using reference sample
batch rna-seq batch effect written 24 days ago by ricmelof • 0
1
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1
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1.3k
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1
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Batch query of ancestral and derived alleles from Ensemble
ancestral allele ensembl snp batch written 3.9 years ago by Mr Locuace • 90 • updated 6 weeks ago by Biostar ♦♦ 20
4
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1
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209
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1
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Advice on Handling Batch Effect in ChIP-seq Experiment
replicates sequencing chip-seq batch effect batch written 3 months ago by dmj6ab • 10
3
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2
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2.4k
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2
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Compute a identity matrix from an alignment - command line approach for batch processing
alignment identity batch written 2.9 years ago by fhsantanna • 440 • updated 3 months ago by gadget • 0
0
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1
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312
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1
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Can we use previous estimated ComBat model to correct batch effects for new data?
batch effect microarray rna-seq batch written 8 months ago by Minstein • 130 • updated 8 months ago by Kevin Blighe ♦ 52k
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480
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Experimental design RNAseq differential expression
rna-seq edger limma differential expression batch written 8 months ago by Pietro • 90 • updated 8 months ago by Biostar ♦♦ 20
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2.0k
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svaseq and combat
combat sva effect batch written 2.6 years ago by Folder40g • 120 • updated 8 months ago by liull_hust • 0
1
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0
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218
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Filtering Genes / Batch Correction
gene R rna-seq batch written 9 months ago by shinobee • 40
0
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1
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361
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1
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batch effect Deseq2 Wald test
deseq2 wald test rna-seq batch written 10 months ago by mariannapauletto • 20 • updated 10 months ago by Devon Ryan ♦ 93k
2
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1
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587
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1
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Question regarding Batch removal in single cell RNA seq data
rna-seq scrnaseq batch written 12 months ago by xiaominren0118 • 0 • updated 12 months ago by kristoffer.vittingseerup • 2.9k
5
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1
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411
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6 follow
1
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Perl/Python script for batch download mRNA sequences for multiple genes
mrna batch written 14 months ago by Shicheng Guo • 7.8k • updated 14 months ago by Carambakaracho • 1.9k
2
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1
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2.2k
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1
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Lmer() for RNA-seq with batch as random effect: how to prepare input?
lmer mixed model rna-seq batch written 3.8 years ago by Ekarl2 • 90 • updated 14 months ago by RamRS ♦ 25k
1
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1
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1.5k
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1
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Command line blast atlas
command line blast atlas batch written 4.7 years ago by Lee Katz • 3.0k • updated 16 months ago by ropolocan • 600
3
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1
answer
634
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1
answer
Batch and combining reads from two flow cells for the same ChIP/ATAC-seq library
illumina combine atac-seq chip-seq batch written 18 months ago by reskejak • 20 • updated 18 months ago by Devon Ryan ♦ 93k
0
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429
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How to download FASTA file from psRNAtarget
fasta sequence script download batch written 18 months ago by ebrahimi.re67 • 0
4
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1
answer
945
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1
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How to specify columns in Uniprot batch query from Uniprot IDs?
perl proteinid uniprot batch written 21 months ago by Solowars • 50 • updated 21 months ago by Elisabeth Gasteiger • 1.7k
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570
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Batch Annotation of Bacterial Gene Clusters
annotation gene cluster batch written 22 months ago by kayrouz.1 • 0
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1
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1.0k
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1
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Doubt about batch effect and gene expression analysis
gene expression limma batch written 23 months ago by Picasa • 480 • updated 23 months ago by Kevin Blighe ♦ 52k
1
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0
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835
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Remove batch effect from exome data
exome exome sequencing ngs batch effect batch written 2.2 years ago by Alternative • 240
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1
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1.8k
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6 follow
1
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HHpred batch submission
hhpred fasta sequence batch written 2.4 years ago by dhalaa1 • 20 • updated 2.4 years ago by Joe ♦ 15k
0
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0
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967
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Workflow for removing batch effect between different studies: meta-analysis
batch meta-analysis filtering microarray written 2.7 years ago by ali.hassan.nehme • 0
2
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0
answers
816
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Batch conservation analysis
conservation fasta batch genome written 2.8 years ago by chrys • 40
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1.0k
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Batch correction without changing the data in the first batch
R chip microarray batch written 2.9 years ago by erfan741 • 50
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0
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2.0k
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0
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SVA + DESEQ2 : Looking for batcheffect in RNA-SEQ
sva deseq2 rna-seq batch written 3.0 years ago by ZheFrench • 270
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2
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7.1k
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5 follow
2
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Help creating .sqn file using tbl2asn to submit multiple sequences to Genbank
sequence genbank tbl2asn submit batch written 5.6 years ago by jolespin • 130 • updated 3.1 years ago by lizardburns • 0
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1.8k
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edgeR User Guide batch effect question
correlation edger batch written 3.2 years ago by Assa Yeroslaviz • 1.2k
1
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1
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853
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1
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Return the Title and URL of ~100 pubmed queries to a flat file
query pubmed batch written 3.3 years ago by Vincent Laufer • 1.1k
1
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1
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979
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1
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Help with preparing sequences for structure prediction
bash structure prediction itasser php batch written 3.7 years ago by Ali HEBRA • 0 • updated 3.7 years ago by RamRS ♦ 25k
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1
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2.0k
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1
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Downloading multiple PDB sequences
pdb download batch written 4.0 years ago by Bioaln • 320 • updated 4.0 years ago by Nestor Wendt • 100
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