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Showing: bbduk • reset
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<prev • 20 results • page 1 of 1 • next >
1
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1
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170
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1
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Bulk quality interleaving with bbmap reformat command
reformat loop bbduk bbmap bash written 10 weeks ago by infenit101 • 10 • updated 6 days ago by ross_whetten • 10
2
votes
0
answers
171
views
0
answers
error running bbduk to trim primers
bbduk primer trimming written 4 weeks ago by caverill • 40
7
votes
1
answer
234
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5 follow
1
answer
BBDuk.sh and BBDuk2.sh barcodefilter does not filter the reads
barcode fastq bbduk bbmap illumina index written 9 weeks ago by chilifan • 60
1
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0
answers
164
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0
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How to hide console output from BBduk
bbduk written 4 months ago by bnorris823 • 0 • updated 4 months ago by hyhela • 10
2
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0
answers
287
views
0
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Removing vector sequences from pacbio BAM files
sequence pac bio bbduk written 5 months ago by bnorris823 • 0
4
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1
answer
248
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1
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BBduk ftm parameter
parameters bbduk written 6 months ago by lieven.sterck ♦ 3.9k
2
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1
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244
views
1
answer
Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 6 months ago by f.a.galkin • 10 • updated 6 months ago by finswimmer ♦ 9.8k
1
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1
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568
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1
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Using BBDuk to trim degenerate primers off of amplicon reads
bbduk written 8 months ago by t89oconnell • 10 • updated 8 months ago by genomax ♦ 62k
3
votes
0
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529
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6 follow
0
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kmer content failling with fastqc
illumina ngs bbduk trimming adaptor trimming written 8 months ago by slimane.khayi • 40
0
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1
answer
433
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1
answer
Poly A trimming from RNA-seq data by bbduk (bbmap package)
polya trimming bbduk bbmap rna-seq written 9 months ago by seta • 1.1k • updated 9 months ago by WouterDeCoster ♦ 36k
1
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1
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478
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1
answer
BBDuk output different sized paired end reads
preprocessing bbduk bbmap written 9 months ago by GLFrey • 20 • updated 9 months ago by h.mon ♦ 23k
0
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1
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491
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1
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bbduk for pre-processing
reads pre-processing bbduk bbmap written 15 months ago by deepti1rao • 20 • updated 15 months ago by genomax ♦ 62k
0
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1
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891
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1
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Sequence length distribution after adapter trimming
adapter trimming bbduk fastqc written 16 months ago by lamteva.vera • 140
14
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0
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1.7k
views
6 follow
0
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HiSeq 4000 PhiX screening and removal using bbduk
spikein bbduk bbmap filtering phix written 18 months ago by Anand Rao • 210
0
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1
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1.8k
views
1
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Read trimming with BBDuk
read trimming bbduk bbmap written 21 months ago by seta • 1.1k • updated 21 months ago by genomax ♦ 62k
7
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0
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4.4k
views
9 follow
0
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Differences between trimming tools: cutadapt, bbduk and sickle
trimming bbduk sickle cutadapt written 22 months ago by rioualen • 320
1
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0
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865
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0
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Preprocessing RNA-seq data with BBDuk
adapter trimming bbduk quality trimming rna-seq written 22 months ago by Lucila • 20
1
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1
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2.6k
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1
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BBDuk and qtrim parameter
trimming bbduk written 2.8 years ago by int11ap1 • 310 • updated 2.8 years ago by Brian Bushnell ♦ 16k
2
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1
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2.1k
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1
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BBDuk trimming concern: large discarded, too aggressive (?)
bbduk rna-seq written 2.9 years ago by umn_bist • 320
4
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1
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807
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1
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Faster alternative to Prinseq PE trimming polyN
prinseq bbduk rna-seq written 2.9 years ago by umn_bist • 320 • updated 2.9 years ago by RamRS ♦ 20k
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