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<prev • 33 results • page 1 of 2 • next >
2
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1
answer
642
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1
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bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
bbduk bbmap flags written 16 months ago by Anand Rao • 350 • updated 3 months ago by hegyihedi • 0
4
votes
1
answer
240
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1
answer
bbduk truncated fastq file according to FastQC - help?
pe bbduk metagenome fastqc written 4 months ago by hannahfreund3 • 0 • updated 4 months ago by swbarnes2 ♦ 9.6k
4
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0
answers
239
views
0
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How to extract reads with exact match with BBDuk?
fastq bbduk rna-seq written 5 months ago by camelest • 10
0
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0
answers
289
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0
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bbduk - trimming ITS primer sequence
bbduk its written 5 months ago by AfinaM • 0
0
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0
answers
209
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0
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Please help about java error of BBDuk
java bbduk bbmap brian bushnel written 5 months ago by seta • 1.4k
3
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2
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530
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2
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Question on bbduk ftl option when used with adapter and quality trimming
bbduk rna-seq written 15 months ago by tamu.anand • 10 • updated 6 months ago by DriesB • 90
4
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2
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240
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2
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Removing UniVec sequences in Assembly
assembly tsa bbduk rna-seq cutadapt written 8 months ago by jfo • 40 • updated 8 months ago by GenoMax ♦ 96k
0
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1
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3.8k
views
1
answer
Read trimming with BBDuk
read trimming bbduk bbmap written 3.8 years ago by seta • 1.4k • updated 9 months ago by Biostar ♦♦ 20
2
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1
answer
194
views
1
answer
bbduk fails to output histograms for random files
bbduk bbtools written 13 months ago by heso • 40
1
vote
0
answers
368
views
0
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bbsplit not using all reads in library
bbmap bbduk bbsplit rna-seq written 13 months ago by ghd1998 • 0
10
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2
answers
406
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6 follow
2
answers
Interpreting bbduk histogram headers and contents
bbduk bbmap histograms written 15 months ago by gnmcsbnfrmtcsclb • 30 • updated 15 months ago by harold.smith.tarheel • 4.6k
1
vote
0
answers
859
views
0
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BBDuk does not remove all adapters
trimming bbduk rna-seq truseq adapters written 17 months ago by f.dinesh • 0 • updated 17 months ago by GenoMax ♦ 96k
2
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0
answers
667
views
0
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How does bbduk calculate it's memory requirements?
bbduk docker memory written 21 months ago by Lina F • 200
2
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0
answers
568
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5 follow
0
answers
How to hide console output from BBduk
bbduk written 2.4 years ago by bnorris823 • 0 • updated 23 months ago by hobi • 0
2
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1
answer
1.4k
views
1
answer
Java error message when using BBDuk
genome java bbduk qc bbtools written 23 months ago by c.e.chong • 40 • updated 23 months ago by GenoMax ♦ 96k
1
vote
1
answer
910
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1
answer
Bulk quality interleaving with bbmap reformat command
reformat loop bbduk bbmap bash written 2.2 years ago by Longshotx • 50 • updated 2.0 years ago by ross_whetten • 10
2
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0
answers
1.3k
views
0
answers
error running bbduk to trim primers
bbduk primer trimming written 2.1 years ago by caverill • 40
8
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1
answer
1.2k
views
5 follow
1
answer
BBDuk.sh and BBDuk2.sh barcodefilter does not filter the reads
barcode fastq bbduk bbmap illumina index written 2.2 years ago by chilifan • 80
2
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0
answers
767
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0
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Removing vector sequences from pacbio BAM files
sequence pac bio bbduk written 2.5 years ago by bnorris823 • 0
4
votes
1
answer
740
views
1
answer
BBduk ftm parameter
parameters bbduk written 2.6 years ago by lieven.sterck ♦ 10.0k
2
votes
1
answer
780
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1
answer
Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 2.6 years ago by f.a.galkin • 40 • updated 2.6 years ago by finswimmer ♦ 14k
2
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1
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1.4k
views
1
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Using BBDuk to trim degenerate primers off of amplicon reads
bbduk written 2.8 years ago by t89oconnell • 10 • updated 2.8 years ago by GenoMax ♦ 96k
3
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0
answers
1.4k
views
6 follow
0
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kmer content failling with fastqc
illumina ngs bbduk trimming adaptor trimming written 2.8 years ago by slimane.khayi • 40
0
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1
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1.4k
views
1
answer
Poly A trimming from RNA-seq data by bbduk (bbmap package)
polya trimming bbduk bbmap rna-seq written 2.8 years ago by seta • 1.4k • updated 2.8 years ago by WouterDeCoster ♦ 45k
2
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1
answer
1.4k
views
1
answer
BBDuk output different sized paired end reads
preprocessing bbduk bbmap written 2.8 years ago by GLFrey • 20 • updated 2.8 years ago by h.mon ♦ 32k
0
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1
answer
981
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1
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bbduk for pre-processing
reads pre-processing bbduk bbmap written 3.3 years ago by deepti1rao • 30 • updated 3.3 years ago by GenoMax ♦ 96k
1
vote
1
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2.1k
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5 follow
1
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Sequence length distribution after adapter trimming
adapter trimming bbduk fastqc written 3.4 years ago by lamteva.vera • 200
14
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0
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3.2k
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6 follow
0
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HiSeq 4000 PhiX screening and removal using bbduk
spikein bbduk bbmap filtering phix written 3.5 years ago by Anand Rao • 350
15
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1
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9.0k
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15 follow
1
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Differences between trimming tools: cutadapt, bbduk and sickle
trimming bbduk sickle cutadapt written 3.9 years ago by rioualen • 470
1
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0
answers
1.5k
views
0
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Preprocessing RNA-seq data with BBDuk
adapter trimming bbduk quality trimming rna-seq written 3.9 years ago by Lucila • 20
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