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<prev • 22 results • page 1 of 1 • next >
2
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0
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131
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How does bbduk calculate it's memory requirements?
bbduk docker memory written 4 weeks ago by Lina F • 150
2
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0
answers
247
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5 follow
0
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How to hide console output from BBduk
bbduk written 9 months ago by bnorris823 • 0 • updated 11 weeks ago by hobi • 0
2
votes
1
answer
210
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1
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Java error message when using BBDuk
genome java bbduk qc bbtools written 3 months ago by c.e.chong • 10 • updated 3 months ago by genomax ♦ 68k
1
vote
1
answer
308
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1
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Bulk quality interleaving with bbmap reformat command
reformat loop bbduk bbmap bash written 6 months ago by infenit101 • 20 • updated 4 months ago by ross_whetten • 10
2
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0
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368
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0
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error running bbduk to trim primers
bbduk primer trimming written 5 months ago by caverill • 40
7
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1
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405
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5 follow
1
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BBDuk.sh and BBDuk2.sh barcodefilter does not filter the reads
barcode fastq bbduk bbmap illumina index written 6 months ago by chilifan • 70
2
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0
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404
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Removing vector sequences from pacbio BAM files
sequence pac bio bbduk written 9 months ago by bnorris823 • 0
4
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1
answer
356
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1
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BBduk ftm parameter
parameters bbduk written 10 months ago by lieven.sterck ♦ 5.4k
2
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1
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346
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1
answer
Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 11 months ago by f.a.galkin • 40 • updated 11 months ago by finswimmer ♦ 11k
1
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1
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809
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1
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Using BBDuk to trim degenerate primers off of amplicon reads
bbduk written 13 months ago by t89oconnell • 10 • updated 13 months ago by genomax ♦ 68k
3
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0
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708
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6 follow
0
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kmer content failling with fastqc
illumina ngs bbduk trimming adaptor trimming written 13 months ago by slimane.khayi • 40
0
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1
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605
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1
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Poly A trimming from RNA-seq data by bbduk (bbmap package)
polya trimming bbduk bbmap rna-seq written 13 months ago by seta • 1.2k • updated 13 months ago by WouterDeCoster ♦ 39k
1
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1
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648
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1
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BBDuk output different sized paired end reads
preprocessing bbduk bbmap written 13 months ago by GLFrey • 20 • updated 13 months ago by h.mon ♦ 26k
0
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1
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615
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1
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bbduk for pre-processing
reads pre-processing bbduk bbmap written 19 months ago by deepti1rao • 20 • updated 19 months ago by genomax ♦ 68k
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1
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1.1k
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1
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Sequence length distribution after adapter trimming
adapter trimming bbduk fastqc written 21 months ago by lamteva.vera • 160
14
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0
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2.0k
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6 follow
0
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HiSeq 4000 PhiX screening and removal using bbduk
spikein bbduk bbmap filtering phix written 22 months ago by Anand Rao • 210
0
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1
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2.3k
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1
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Read trimming with BBDuk
read trimming bbduk bbmap written 2.2 years ago by seta • 1.2k • updated 2.2 years ago by genomax ♦ 68k
13
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5.6k
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13 follow
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Differences between trimming tools: cutadapt, bbduk and sickle
trimming bbduk sickle cutadapt written 2.2 years ago by rioualen • 360
1
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1.0k
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0
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Preprocessing RNA-seq data with BBDuk
adapter trimming bbduk quality trimming rna-seq written 2.2 years ago by Lucila • 20
1
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1
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2.9k
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1
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BBDuk and qtrim parameter
trimming bbduk written 3.2 years ago by int11ap1 • 350 • updated 3.2 years ago by Brian Bushnell ♦ 16k
2
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1
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2.3k
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1
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BBDuk trimming concern: large discarded, too aggressive (?)
bbduk rna-seq written 3.3 years ago by umn_bist • 320
4
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1
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885
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1
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Faster alternative to Prinseq PE trimming polyN
prinseq bbduk rna-seq written 3.3 years ago by umn_bist • 320 • updated 3.3 years ago by RamRS ♦ 22k
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