Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 28 results • page 1 of 1 • next >
0
votes
1
answer
3.1k
views
1
answer
Read trimming with BBDuk
read trimming bbduk bbmap written 3.1 years ago by seta • 1.3k • updated 15 days ago by Biostar ♦♦ 20
2
votes
1
answer
107
views
1
answer
bbduk fails to output histograms for random files
bbduk bbtools written 4 months ago by heso • 40
1
vote
0
answers
190
views
0
answers
bbsplit not using all reads in library
bbmap bbduk bbsplit rna-seq written 4 months ago by ghd1998 • 0
10
votes
2
answers
239
views
6 follow
2
answers
Interpreting bbduk histogram headers and contents
bbduk bbmap histograms written 6 months ago by gnmcsbnfrmtcsclb • 20 • updated 6 months ago by harold.smith.tarheel • 4.5k
0
votes
0
answers
207
views
0
answers
Question on bbduk ftl option when used with adapter and quality trimming
bbduk rna-seq written 6 months ago by tamu.anand • 0
2
votes
0
answers
257
views
0
answers
bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
bbduk bbmap flags written 7 months ago by Anand Rao • 290 • updated 7 months ago by michael.ante • 3.6k
1
vote
0
answers
376
views
0
answers
BBDuk does not remove all adapters
trimming bbduk rna-seq truseq adapters written 8 months ago by f.dinesh • 0 • updated 8 months ago by genomax ♦ 84k
2
votes
0
answers
374
views
0
answers
How does bbduk calculate it's memory requirements?
bbduk docker memory written 12 months ago by Lina F • 160
2
votes
0
answers
419
views
5 follow
0
answers
How to hide console output from BBduk
bbduk written 20 months ago by bnorris823 • 0 • updated 14 months ago by hobi • 0
2
votes
1
answer
812
views
1
answer
Java error message when using BBDuk
genome java bbduk qc bbtools written 14 months ago by c.e.chong • 20 • updated 14 months ago by genomax ♦ 84k
1
vote
1
answer
661
views
1
answer
Bulk quality interleaving with bbmap reformat command
reformat loop bbduk bbmap bash written 18 months ago by Longshotx • 50 • updated 16 months ago by ross_whetten • 10
2
votes
0
answers
824
views
0
answers
error running bbduk to trim primers
bbduk primer trimming written 16 months ago by caverill • 40
7
votes
1
answer
824
views
5 follow
1
answer
BBDuk.sh and BBDuk2.sh barcodefilter does not filter the reads
barcode fastq bbduk bbmap illumina index written 18 months ago by chilifan • 70
2
votes
0
answers
619
views
0
answers
Removing vector sequences from pacbio BAM files
sequence pac bio bbduk written 21 months ago by bnorris823 • 0
4
votes
1
answer
585
views
1
answer
BBduk ftm parameter
parameters bbduk written 22 months ago by lieven.sterck ♦ 7.8k
2
votes
1
answer
591
views
1
answer
Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 22 months ago by f.a.galkin • 40 • updated 22 months ago by finswimmer ♦ 13k
1
vote
1
answer
1.2k
views
1
answer
Using BBDuk to trim degenerate primers off of amplicon reads
bbduk written 2.0 years ago by t89oconnell • 10 • updated 2.0 years ago by genomax ♦ 84k
3
votes
0
answers
1.1k
views
6 follow
0
answers
kmer content failling with fastqc
illumina ngs bbduk trimming adaptor trimming written 2.0 years ago by slimane.khayi • 40
0
votes
1
answer
1.0k
views
1
answer
Poly A trimming from RNA-seq data by bbduk (bbmap package)
polya trimming bbduk bbmap rna-seq written 2.0 years ago by seta • 1.3k • updated 2.0 years ago by WouterDeCoster ♦ 43k
1
vote
1
answer
1.1k
views
1
answer
BBDuk output different sized paired end reads
preprocessing bbduk bbmap written 2.1 years ago by GLFrey • 20 • updated 2.1 years ago by h.mon ♦ 29k
0
votes
1
answer
827
views
1
answer
bbduk for pre-processing
reads pre-processing bbduk bbmap written 2.5 years ago by deepti1rao • 30 • updated 2.5 years ago by genomax ♦ 84k
1
vote
1
answer
1.6k
views
5 follow
1
answer
Sequence length distribution after adapter trimming
adapter trimming bbduk fastqc written 2.7 years ago by lamteva.vera • 180
14
votes
0
answers
2.7k
views
6 follow
0
answers
HiSeq 4000 PhiX screening and removal using bbduk
spikein bbduk bbmap filtering phix written 2.8 years ago by Anand Rao • 290
15
votes
0
answers
7.8k
views
15 follow
0
answers
Differences between trimming tools: cutadapt, bbduk and sickle
trimming bbduk sickle cutadapt written 3.1 years ago by rioualen • 390
1
vote
0
answers
1.4k
views
0
answers
Preprocessing RNA-seq data with BBDuk
adapter trimming bbduk quality trimming rna-seq written 3.2 years ago by Lucila • 20
4
votes
1
answer
3.4k
views
1
answer
BBDuk and qtrim parameter
trimming bbduk written 4.1 years ago by int11ap1 • 420 • updated 4.1 years ago by Brian Bushnell ♦ 17k
2
votes
1
answer
2.6k
views
1
answer
BBDuk trimming concern: large discarded, too aggressive (?)
bbduk rna-seq written 4.2 years ago by umn_bist • 370
4
votes
1
answer
1.1k
views
1
answer
Faster alternative to Prinseq PE trimming polyN
prinseq bbduk rna-seq written 4.2 years ago by umn_bist • 370 • updated 4.2 years ago by RamRS ♦ 27k
<prev • 28 results • page 1 of 1 • next >
Recent Votes
Recent Locations • All »
  • Bangkok, 1 minute ago
  • Glasgow, Scotland, 3 minutes ago
  • VIB, Ghent, Belgium, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1698 users visited in the last hour