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Showing: bbduk • reset
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<prev • 18 results • page 1 of 1 • next >
0
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70
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Bulk quality interleaving with bbmap reformat command
reformat loop bbduk bbmap bash written 3 days ago by infenit101 • 10
1
vote
0
answers
134
views
0
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How to hide console output from BBduk
bbduk written 10 weeks ago by bnorris823 • 0 • updated 10 weeks ago by hyhela • 10
2
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0
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225
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0
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Removing vector sequences from pacbio BAM files
sequence pac bio bbduk written 12 weeks ago by bnorris823 • 0
4
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1
answer
202
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1
answer
BBduk ftm parameter
parameters bbduk written 4 months ago by lieven.sterck • 3.3k
2
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1
answer
188
views
1
answer
Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 4 months ago by f.a.galkin • 10 • updated 4 months ago by finswimmer ♦ 7.8k
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1
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441
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1
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Using BBDuk to trim degenerate primers off of amplicon reads
bbduk written 6 months ago by t89oconnell • 0 • updated 6 months ago by genomax ♦ 59k
3
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0
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431
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6 follow
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kmer content failling with fastqc
illumina ngs bbduk trimming adaptor trimming written 6 months ago by slimane.khayi • 40
0
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1
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366
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1
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Poly A trimming from RNA-seq data by bbduk (bbmap package)
polya trimming bbduk bbmap rna-seq written 6 months ago by seta • 1.1k • updated 6 months ago by WouterDeCoster ♦ 35k
1
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1
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390
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1
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BBDuk output different sized paired end reads
preprocessing bbduk bbmap written 7 months ago by GLFrey • 20 • updated 7 months ago by h.mon ♦ 21k
0
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1
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443
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1
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bbduk for pre-processing
reads pre-processing bbduk bbmap written 12 months ago by deepti1rao • 20 • updated 12 months ago by genomax ♦ 59k
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1
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786
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1
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Sequence length distribution after adapter trimming
adapter trimming bbduk fastqc written 14 months ago by lamteva.vera • 130
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0
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1.5k
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6 follow
0
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HiSeq 4000 PhiX screening and removal using bbduk
spikein bbduk bbmap filtering phix written 15 months ago by Anand Rao • 160
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1
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1.6k
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1
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Read trimming with BBDuk
read trimming bbduk bbmap written 19 months ago by seta • 1.1k • updated 19 months ago by genomax ♦ 59k
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3.6k
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9 follow
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Differences between trimming tools: cutadapt, bbduk and sickle
trimming bbduk sickle cutadapt written 20 months ago by rioualen • 320
1
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0
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793
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Preprocessing RNA-seq data with BBDuk
adapter trimming bbduk quality trimming rna-seq written 20 months ago by Lucila • 20
1
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1
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2.4k
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1
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BBDuk and qtrim parameter
trimming bbduk written 2.6 years ago by int11ap1 • 310 • updated 2.6 years ago by Brian Bushnell ♦ 16k
2
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1
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2.0k
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1
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BBDuk trimming concern: large discarded, too aggressive (?)
bbduk rna-seq written 2.7 years ago by umn_bist • 320
4
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1
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766
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1
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Faster alternative to Prinseq PE trimming polyN
prinseq bbduk rna-seq written 2.8 years ago by umn_bist • 320 • updated 2.8 years ago by RamRS ♦ 19k
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