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Read trimming with BBDuk
read trimming bbduk bbmap written 3.1 years ago by seta1.3k • updated 15 days ago by Biostar ♦♦ 20
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Interpreting bbduk histogram headers and contents
bbduk bbmap histograms written 6 months ago by gnmcsbnfrmtcsclb20 • updated 6 months ago by harold.smith.tarheel4.5k
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bbduk flags 'tossbrokenreads' and 'nullifybrokenquality'
bbduk bbmap flags written 7 months ago by Anand Rao290 • updated 7 months ago by michael.ante3.6k
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BBDuk does not remove all adapters
trimming bbduk rna-seq truseq adapters written 8 months ago by f.dinesh0 • updated 8 months ago by genomax84k
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How to hide console output from BBduk
bbduk written 20 months ago by bnorris8230 • updated 14 months ago by hobi0
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Java error message when using BBDuk
genome java bbduk qc bbtools written 14 months ago by c.e.chong20 • updated 14 months ago by genomax84k
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Bulk quality interleaving with bbmap reformat command
reformat loop bbduk bbmap bash written 18 months ago by Longshotx 50 • updated 16 months ago by ross_whetten10
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BBduk ftm parameter
parameters bbduk written 22 months ago by lieven.sterck7.8k
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Metagenomics: rationale behind Q trimming
illumina metagenomics bbduk quality trimming written 22 months ago by f.a.galkin40 • updated 22 months ago by finswimmer13k
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Using BBDuk to trim degenerate primers off of amplicon reads
bbduk written 2.0 years ago by t89oconnell10 • updated 2.0 years ago by genomax84k
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Poly A trimming from RNA-seq data by bbduk (bbmap package)
polya trimming bbduk bbmap rna-seq written 2.0 years ago by seta1.3k • updated 2.0 years ago by WouterDeCoster43k
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BBDuk output different sized paired end reads
preprocessing bbduk bbmap written 2.1 years ago by GLFrey20 • updated 2.1 years ago by h.mon29k
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bbduk for pre-processing
reads pre-processing bbduk bbmap written 2.5 years ago by deepti1rao30 • updated 2.5 years ago by genomax84k
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BBDuk and qtrim parameter
trimming bbduk written 4.1 years ago by int11ap1420 • updated 4.1 years ago by Brian Bushnell17k
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Faster alternative to Prinseq PE trimming polyN
prinseq bbduk rna-seq written 4.2 years ago by umn_bist370 • updated 4.2 years ago by RamRS27k
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