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<prev • 390 results • page 1 of 13 • next >
5
votes
2
answers
71
views
2
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Reconstruct bed file out of columns
R bed script columns python written 1 day ago by dzisis1986 • 20 • updated 1 day ago by zx8754 ♦ 4.1k
2
votes
1
answer
89
views
1
answer
Is it possible to get .bed file of sequenced regions after NGS experiment?
bed ngs written 6 days ago by Adam • 10 • updated 6 days ago by Alex Reynolds ♦ 23k
0
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0
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71
views
0
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Getting transcriptomic coordinates for CDS exons from a GTF
gtf bed written 14 days ago by rubic • 160
4
votes
2
answers
120
views
2
answers
The efficient way to generate fasta and bed files
fasta python bed written 14 days ago by elisheva • 70
3
votes
1
answer
4.5k
views
1
answer
Bed File Bedpe Format
bedtools bed bam conversion written 6.7 years ago by Assa Yeroslaviz • 1.1k • updated 20 days ago by Biostar ♦♦ 20
3
votes
2
answers
127
views
2
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plot a bedgraph
bed bedgraph rna-seq plot written 4 weeks ago by sacha • 1.1k
1
vote
1
answer
142
views
1
answer
Excluding intervals with repeats
bed repeats masking written 5 weeks ago by rbronste • 160
0
votes
2
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170
views
2
answers
bedtools closest - result for only the first query
bedtools software error closest bed written 7 weeks ago by yjyj • 0
5
votes
1
answer
152
views
1
answer
Batch extracting various coordinates of various FASTA IDs directly from NCBI?
ncbi fasta tblastn rentrez bed written 8 weeks ago by yotiao • 0 • updated 8 weeks ago by Pierre Lindenbaum ♦ 106k
0
votes
1
answer
678
views
1
answer
gappedPeak format MACS2
bed faire-seq chip-seq written 14 months ago by boczniak767 • 590 • updated 9 weeks ago by dfournie • 0
0
votes
1
answer
140
views
1
answer
Source of bed file
bed ngs rna-seq written 9 weeks ago by ag1805x • 80 • updated 9 weeks ago by Devon Ryan ♦ 78k
2
votes
2
answers
174
views
2
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subset gtf file based on coordinates
gtf bed genomic ranges rna-seq subset written 10 weeks ago by Assa Yeroslaviz • 1.1k • updated 10 weeks ago by ATpoint • 3.5k
2
votes
1
answer
231
views
1
answer
Clustering of CNV genomic coordinates, take 2
genomic coordinates cluster analysis cnv bed written 12 weeks ago by Sakti • 340 • updated 12 weeks ago by Sean Davis ♦ 24k
4
votes
2
answers
282
views
2
answers
Extracting interval from fasta header
fasta bed header interval written 3 months ago by rbronste • 160 • updated 3 months ago by Alex Reynolds ♦ 23k
1
vote
1
answer
229
views
1
answer
Official gene symbol list to BED file
bed gene symbol deseq2 written 3 months ago by rbronste • 160 • updated 3 months ago by Alex Reynolds ♦ 23k
39
votes
4
answers
22k
views
16 follow
4
answers
How To Convert Gencode Gtf Into Bed Format ?
gtf bed written 5.5 years ago by biorepine • 1.3k • updated 3 months ago by zoegward • 40
4
votes
1
answer
145
views
1
answer
bedops -u does not work properly
bed bedops intersect written 3 months ago by Ming Tang • 2.3k • updated 3 months ago by Alex Reynolds ♦ 23k
1
vote
0
answers
342
views
0
answers
How to convert gtf to bed format
gtf bed written 3 months ago by Bioinfo • 170
0
votes
1
answer
286
views
1
answer
Depth of Coverage - Calculated Per Probe / Bed Region
bed bam tool depth written 3 months ago by jnowacki • 30 • updated 3 months ago by Kevin Blighe ♦ 17k
1
vote
0
answers
239
views
0
answers
Splitting .bed file by genomic location
R promoter chip-seq bed written 3 months ago by rbronste • 160
0
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2
answers
309
views
2
answers
Question: From A List Of Gene Symbols To A Bed File With name of the chromosome and Start/end position
gene genesymbols position bed chromosome written 3 months ago by 11yj3312 • 0 • updated 3 months ago by Alex Reynolds ♦ 23k
9
votes
4
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3.2k
views
7 follow
4
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How To Convert A Basic Bed File With Only 3 Columns (Chrname, Start, End Site) Into A Bigger Bed With 6 Columns
macs bed chip-seq written 6.4 years ago by Hamilton • 260 • updated 4 months ago by Biostar ♦♦ 20
0
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2
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213
views
2
answers
VCF to BED conversion error in BEDOPS
vcf bed bedops written 4 months ago by Shab86 • 220 • updated 4 months ago by Alex Reynolds ♦ 23k
0
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0
answers
259
views
0
answers
Bed tools for comparing files and calculating the percentage of different parts
bedtools bed percentage written 4 months ago by osieman52 • 10
4
votes
5
answers
3.1k
views
6 follow
5
answers
Extract Reads In Fastq Using A Bed File.
bed fastq written 4.8 years ago by Kasthuri • 220 • updated 4 months ago by michael.ante • 2.4k
2
votes
1
answer
353
views
1
answer
GTF2BED does not provide meaningful output?
gtf bed rna-seq written 4 months ago by chahatupretiiitk • 40 • updated 4 months ago by Alex Reynolds ♦ 23k
8
votes
4
answers
9.7k
views
5 follow
4
answers
How To Convert Bed Format To Gtf?
gtf bed convert written 5.2 years ago by ftp • 110 • updated 4 months ago by simon.vanheeringen • 140
1
vote
0
answers
455
views
0
answers
Looking-up SNPs within 16SrRNA from BED/bim/fam files
fam bed snps genotype plink written 5 months ago by F • 3.0k
1
vote
1
answer
384
views
1
answer
Convert fastq to plink .bed
bed fastq bam plink written 5 months ago by genomics Newbie • 0 • updated 5 months ago by WouterDeCoster ♦ 27k
8
votes
0
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768
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8 follow
0
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Tutorial: A compilation of conversion tools for BED, SAM/BAM, psl, pslx, blast tabular and blast xml
psl bed tutorial sam blast written 5 months ago by Joseph Hughes • 2.5k
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