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<prev • 353 results • page 1 of 12 • next >
2
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2
answers
95
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2
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Converting narrowPeak to bed
bed narrowpeak written 2 days ago by Spacebio • 80 • updated 2 days ago by Rory Stark • 170
10
votes
5
answers
227
views
6 follow
5
answers
chrom.sizes computed locally
bigbed bed ucsc ensembl written 10 days ago by ypriverol • 0 • updated 8 days ago by cpad0112 • 1.9k
0
votes
0
answers
117
views
0
answers
How to transfer annotation from HG19 to genome sequence.
genome bedtools hg19 bed ucsc written 8 days ago by clear.choi • 30 • updated 8 days ago by Ram ♦ 12k
2
votes
1
answer
141
views
1
answer
HG19 Annotation download with Gene Names.
genome annotation hg19 bed igv written 9 days ago by clear.choi • 30 • updated 9 days ago by genecats.ucsc • 340
0
votes
0
answers
114
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0
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RTrackLayer import bed without name and strand orientation
rtracklayer bed R written 17 days ago by Seigfried • 20
44
votes
10
answers
20k
views
23 follow
10
answers
How To Sort Bed Format File
bed written 4.6 years ago by lyz10302012 • 260 • updated 17 days ago by chikaharu • 0
2
votes
1
answer
142
views
1
answer
Samtools depth input
bed samtools rna-seq written 29 days ago by Afagh • 20
0
votes
0
answers
160
views
0
answers
Merging bed intervals within a group
bedtools bed bedops written 4 weeks ago by EVR • 430
1
vote
2
answers
200
views
2
answers
Consensus fasta file with uncovered bases set to Ns
genome bed consensus reference fasta written 4 weeks ago by deepti1rao • 0 • updated 4 weeks ago by Matt Shirley ♦ 7.8k
4
votes
1
answer
288
views
1
answer
Bedtools merge only part of feature that overlaps, not whole feature
bedtools bed merge written 5 weeks ago by Niek De Klein • 2.4k • updated 5 weeks ago by Alex Reynolds ♦ 20k
0
votes
1
answer
221
views
1
answer
Duplicate ID in bed file
bed duplicate id written 6 weeks ago by janhuang.cn • 10 • updated 6 weeks ago by Floris Brenk • 790
0
votes
1
answer
199
views
1
answer
Obtaining .bed list of exons of chr17
bed exon written 3 months ago by marghe08 • 0 • updated 6 weeks ago by Alex Reynolds ♦ 20k
2
votes
2
answers
230
views
2
answers
How to extend bed intervals to a uniform size?
bedtools bed genome written 7 weeks ago by bsb4390 • 0 • updated 7 weeks ago by Maciej Jończyk • 590
0
votes
1
answer
147
views
1
answer
how to retrive the most recent entry from uscs databese to build a bed file
bed gene id mysql uscs written 8 weeks ago by paumarc • 0
0
votes
1
answer
231
views
1
answer
Intersect vcf file and bed file
bedtools vcf bed written 8 weeks ago by magicpants • 20
3
votes
1
answer
206
views
1
answer
Find overlapping coordinates between a bed file and multiple files in order and associate the coordinates with the original coordinate in tsv
overlap bed next-gen sequence written 8 weeks ago by skim • 20 • updated 8 weeks ago by Alex Reynolds ♦ 20k
0
votes
0
answers
160
views
0
answers
Where I can download BED files with a lists of genes responsible for Tuberculosis drug resistance and virulence?
gff3 bed tuberculosis vcf written 8 weeks ago by bioinform • 20
2
votes
1
answer
206
views
1
answer
CNVkit GRCh38 tumor-normal pair
wes tcga grch38 cnv bed written 10 weeks ago by plink_9857 • 40 • updated 10 weeks ago by Eric T. • 1.8k
1
vote
1
answer
666
views
1
answer
GFF3 to 12-column BED
gff3 bed written 12 months ago by New2R • 10 • updated 10 weeks ago by t_pod • 0
1
vote
1
answer
192
views
1
answer
overlap BED files, but account for region name
overlap bed bedtools written 3 months ago by igor • 4.5k • updated 3 months ago by Chris Miller ♦ 18k
4
votes
1
answer
187
views
1
answer
UCSC genome viewer for non-model organism
chip-seq alignment visualization bed written 3 months ago by anupriyaverma1408 • 100 • updated 3 months ago by Pierre Lindenbaum ♦ 98k
3
votes
1
answer
204
views
1
answer
How to make bed file for existing bim and fam file
fam bed bim plink written 3 months ago by Mazza • 10 • updated 3 months ago by Maxime Lamontagne • 1.9k
2
votes
1
answer
168
views
1
answer
bed format, START always bigger than END, no matter which strand?
bed bowtie written 4 months ago by bxia • 100 • updated 4 months ago by Alex Reynolds ♦ 20k
1
vote
0
answers
162
views
0
answers
Splitting the Spliced reads from genome Alignment
bedtools bed bedops bam spliced_reads written 4 months ago by EVR • 430
4
votes
1
answer
248
views
1
answer
Intersection of a BED genes with multiple VCFs: report only if at least N intersection.
bedtools vcf wes bed intersection written 4 months ago by badredda • 10 • updated 4 months ago by Alex Reynolds ♦ 20k
19
votes
4
answers
14k
views
11 follow
4
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Batch Fetching Fasta Sequences From Bed File
fasta bed written 6.5 years ago by Carl • 80 • updated 4 months ago by Maximilian Haeussler • 1.3k
1
vote
1
answer
903
views
1
answer
Preparing a .bed for Homer annotation
homer annotatepeaks bed written 22 months ago by giroudpaul • 50 • updated 4 months ago by jiab • 10
0
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1
answer
206
views
1
answer
How to extract sequence message from SAM?
bed sam sequencing written 4 months ago by Jeason Rad • 30 • updated 4 months ago by Pierre Lindenbaum ♦ 98k
7
votes
3
answers
258
views
3
answers
Output bed file region sizes as histogram
bedtools bed bedops histogram written 4 months ago by mmmmcandrew • 60 • updated 4 months ago by Alex Reynolds ♦ 20k
7
votes
1
answer
403
views
1
answer
Convert fasta to bed (no gtf available)
genome ensembl bed cds fasta written 4 months ago by bioinfo8 • 90
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