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<prev • 508 results • page 1 of 17 • next >
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intersect between introns and the UTR/CDS bed files
genome gtf bed rna-seq gene written 1 day ago by qicaibiology • 70
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What are these files?
geo bed rnaseq bedgraph written 9 days ago by ebs15242 • 10 • updated 9 days ago by jared.andrews07 ♦ 6.1k
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7 follow
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Converting narrowPeak to bed
bed narrowpeak written 2.8 years ago by Spacebio • 180 • updated 15 days ago by deepak.tyagi2326 • 0
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60
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Tool to find partial and complete Peak Intersection
bed chip-seq written 18 days ago by christoph.neu • 0
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2
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bedtools closest - result for only the first query
bedtools software error closest bed written 2.3 years ago by yjyj • 0 • updated 19 days ago by Biostar ♦♦ 20
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77
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Threshold for merging bed files
bed written 23 days ago by jt • 0
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3
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144
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Bedtools intersect not reporting all overlaps
bedtools bedtools intersect gff artemis bed written 27 days ago by jamie.pike • 20
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Generate coordinates of specific length between two BED features
bedtools bed written 4 weeks ago by Luca Beltrame • 220
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99
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1
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Bed file grepping from the list
bed grep awk written 4 weeks ago by the_cowa • 40 • updated 4 weeks ago by Pierre Lindenbaum ♦ 129k
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Get nonoverlapping regions of two bed files
bed written 5 weeks ago by vctrm67 • 10
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155
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Correlation Plot for bed files
bed visualization written 5 weeks ago by christoph.neu • 0 • updated 5 weeks ago by A. Domingues • 2.2k
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81
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Genomic intervals to transcriptomic intervals
bed rna-seq written 5 weeks ago by EVR • 570
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67
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Bedtools genomecov option to keep columns 4-6?
genomecov bed bedtools written 5 weeks ago by rioualen • 400
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210
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How can I bin my bed files into 500bp bins?
bed written 5 weeks ago by Tawny • 140
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5 follow
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Combining multiple bedfiles
bedtools bed written 2.1 years ago by christacaggiano • 50 • updated 5 weeks ago by Biostar ♦♦ 20
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GATK mutect2 missing variant
gatk mutect2 mutation bed written 6 weeks ago by cocchi.e89 • 80
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115
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Intersection of bigwig and bed files
bed ucsc bigwig atac-seq peak calling written 6 weeks ago by palabari • 10
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148
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Make a bed file to exclude 1Mb from start and end of contigs
genome filter mask bed written 3 months ago by Rubal • 310 • updated 7 weeks ago by Biostar ♦♦ 20
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101
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Information loss in .bgen to .bed conversion
bed bgen imputation plink gene dosage written 8 weeks ago by rbpz • 0
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130
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from BAM to BED passing cell barcodes
bed umi bam scrna barcode written 9 weeks ago by BrunoGiotti • 110
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33k
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24 follow
5
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How To Write Data In A Granges Object To A Bed File.
bed written 6.5 years ago by Ram • 150 • updated 9 weeks ago by Ahmed Alhendi • 50
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100
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Conversion of the vcf file of structural variants in bed format
vcf bed structural variant 1000genomes written 10 weeks ago by Myosotis1979 • 10
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101
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1
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how to extact first 100 lines of an indexed BED file
genome bed written 10 weeks ago by a.james • 210
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1
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138
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1
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Coverage per gene
gene coverage bed bed files bedtools written 10 weeks ago by gabri.mochales • 30 • updated 10 weeks ago by ATpoint ♦ 36k
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8 follow
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Is There A Program For Viewing Bed Files And Wig Files?
bed wiggle written 8.8 years ago by KCC • 4.0k • updated 11 weeks ago by mingchen720 • 0
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112
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how can I extract intervals from bed file spanning a max larger interval in a windowed mode without disrupting intervals?
bedtools bed bedops sequencing written 12 weeks ago by serpalma.v • 40
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1
answer
153
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1
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Map Fasta to Fasta + Bed file
fasta bed alignment written 3 months ago by Amaranta Remedios • 10 • updated 3 months ago by Kevin Blighe ♦ 61k
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1
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180
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1
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Extract data from a large bed file
genome bed alignment written 3 months ago by el24 • 10 • updated 3 months ago by wm • 460
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177
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Average length of each exon and intron
gtf bed gff next-gen bedtools written 3 months ago by kashiff007 • 130
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1
answer
147
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1
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How to generate start & end coordinates for each chromosome of human ref genome in bed. format (0-based index)
bedtools bed bioconductor genome written 3 months ago by ekwame • 40 • updated 3 months ago by Alex Reynolds ♦ 30k
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