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<prev • 425 results • page 1 of 15 • next >
3
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2
answers
73
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Extending BED intervals
bedtools bed bedops interval written 1 day ago by rbronste • 200 • updated 1 day ago by Alex Reynolds ♦ 26k
6
votes
2
answers
112
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2
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find coverage of specific exomes from a bam file
bedtools genomecov bam coverage bed written 6 days ago by lait • 120 • updated 6 days ago by Pierre Lindenbaum ♦ 114k
1
vote
1
answer
53
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1
answer
Help when using UCSC's table browser
vcf bed ucsc-table-browser written 9 days ago by BMK_83 • 0
3
votes
1
answer
86
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1
answer
Querying Gemini database by using genomic coordinates from a bed file.
gemini bed database query written 12 days ago by eDNAuRNA • 0 • updated 12 days ago by finswimmer ♦ 6.8k
0
votes
1
answer
101
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1
answer
Find unique non overlapping intervals between two files?
bed written 14 days ago by a.rex • 160 • updated 14 days ago by harold.smith.tarheel • 4.2k
3
votes
1
answer
1.0k
views
1
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Convert bed12 to GFF
bed gff bed12 written 21 months ago by cmdcolin • 920
1
vote
1
answer
614
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1
answer
overlap BED files, but account for region name
overlap bed bedtools written 17 months ago by igor ♦ 6.9k • updated 18 days ago by Biostar ♦♦ 20
2
votes
2
answers
139
views
2
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Protein coding mm10 refseq bed
bed refseq mm10 written 21 days ago by rbronste • 200 • updated 20 days ago by vkkodali • 350
5
votes
1
answer
127
views
1
answer
Parsing AME tsv file
ame tsv meme motif bed written 22 days ago by rbronste • 200
0
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1
answer
153
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7 follow
1
answer
How can I make a .bed file from my fasta?
fasta bed mapping bowtie2 written 26 days ago by jaqx008 • 40
1
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1
answer
93
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1
answer
BEDOPS sort-bed BED_LINE_LEN question
bed bedops intervals sort-bed written 26 days ago by rbronste • 200
4
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3
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276
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3
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Plot average expression profile from one bed file across overlapping regions from another bed file in R
bedtools bed R granges overlap written 5 weeks ago by newscient • 10 • updated 5 weeks ago by Nicolas Rosewick ♦ 6.9k
0
votes
1
answer
469
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1
answer
How to extract sequence message from SAM?
bed sam sequencing written 18 months ago by Jeason Rad • 30 • updated 5 weeks ago by Biostar ♦♦ 20
1
vote
1
answer
1.2k
views
1
answer
Bedtools with name and full header
bed written 2.7 years ago by bharata1803 • 310 • updated 5 weeks ago by Biostar ♦♦ 20
2
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1
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1.0k
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1
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[Resolved] Adding a unique ID column to a bed file
data managment bed written 3.0 years ago by giroudpaul • 50 • updated 6 weeks ago by Biostar ♦♦ 20
2
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2
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215
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2
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bed file with indels and SNVs
bed snp written 7 weeks ago by joselu • 50
7
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4
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1.4k
views
4
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How to identify consecutive (adjacent) genomic intervals
latest bed genomic intervals written 2.7 years ago by A. Domingues • 1.6k • updated 8 weeks ago by RamRS ♦ 19k
4
votes
2
answers
1.7k
views
2
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split bed file into several bed files where each region is separated of any other by N bases
bedtools bed bedops written 2.7 years ago by 14134125465346445 • 3.4k • updated 8 weeks ago by RamRS ♦ 19k
3
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1
answer
112
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1
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How do i extract rows from a bedfile that have a certain bedscore?
bed parse written 9 weeks ago by a.rex • 160 • updated 9 weeks ago by Alex Reynolds ♦ 26k
0
votes
2
answers
459
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2
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bedtools closest - result for only the first query
bedtools software error closest bed written 8 months ago by yjyj • 0 • updated 10 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
179
views
1
answer
Error while trying to filter a .vcf.gz file with a bed.gz file
filter error bed file bed written 10 weeks ago by ricfoz • 20 • updated 10 weeks ago by RamRS ♦ 19k
2
votes
2
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192
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2
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Is it possible to generate a BED/BEDGRAPH containing every dinucleotide in the genome?
genome bed written 12 weeks ago by dansapozhnikov • 10 • updated 12 weeks ago by dr_bantz • 80
0
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1
answer
242
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1
answer
VCF to Bed file format using GATK
vcf gatk rna-seq bed written 12 weeks ago by Sa • 0 • updated 12 weeks ago by chrchang523 ♦ 4.2k
12
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2
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176
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6 follow
2
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why do bed files not contain information about the reference?
bed hg38 reference hg19 written 3 months ago by Marvin • 120 • updated 3 months ago by Friederike • 2.3k
2
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0
answers
179
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0
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Get the regions mapped by the same reads
reads bed bam multiple alignments sam written 3 months ago by Corentin • 170
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2
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1.1k
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2
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Duplicate ID in bed file
bed duplicate id written 15 months ago by janhuang.cn • 120 • updated 3 months ago by Sergei Slavskii • 0
7
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2
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258
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7 follow
2
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Compute average score across multiple bed files
R chip-seq python bed written 3 months ago by Andy Lee • 20 • updated 3 months ago by ATpoint ♦ 9.2k
2
votes
1
answer
365
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1
answer
Quick Way to Annotate a Bed File
bed written 3 months ago by gtasource • 20 • updated 3 months ago by colin.kern • 180
5
votes
1
answer
281
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6 follow
1
answer
bam to vcf to .bed
vcf bed bam written 4 months ago by genomics Newbie • 10 • updated 4 months ago by finswimmer ♦ 6.8k
30
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4
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22k
views
16 follow
4
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Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 5.7 years ago by user • 780 • updated 4 months ago by ATpoint ♦ 9.2k
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