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<prev • 342 results • page 1 of 12 • next >
0
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how to retrive the most recent entry from uscs databese to build a bed file
bed gene id mysql uscs written 1 day ago by paumarc • 0
0
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1
answer
111
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1
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Intersect vcf file and bed file
bedtools vcf bed written 1 day ago by magicpants • 10
3
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1
answer
93
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1
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Find overlapping coordinates between a bed file and multiple files in order and associate the coordinates with the original coordinate in tsv
overlap bed next-gen sequence written 1 day ago by skim • 20 • updated 1 day ago by Alex Reynolds ♦ 19k
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90
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Where I can download BED files with a lists of genes responsible for Tuberculosis drug resistance and virulence?
gff3 bed tuberculosis vcf written 4 days ago by bioinform • 10
2
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1
answer
121
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1
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CNVkit GRCh38 tumor-normal pair
wes tcga grch38 cnv bed written 16 days ago by plink_9857 • 40 • updated 13 days ago by Eric T. • 1.7k
1
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1
answer
563
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1
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GFF3 to 12-column BED
gff3 bed written 10 months ago by New2R • 10 • updated 18 days ago by t_pod • 0
1
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1
answer
110
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1
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overlap BED files, but account for region name
overlap bed bedtools written 6 weeks ago by igor • 4.4k • updated 6 weeks ago by Chris Miller ♦ 18k
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103
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0
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Obtaining .bed list of exons of chr17
bed exon written 7 weeks ago by marghe08 • 0
4
votes
1
answer
135
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1
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UCSC genome viewer for non-model organism
chip-seq alignment visualization bed written 7 weeks ago by anupriyaverma1408 • 100 • updated 7 weeks ago by Pierre Lindenbaum ♦ 96k
42
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9
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20k
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22 follow
9
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How To Sort Bed Format File
bed written 4.4 years ago by lyz10302012 • 260 • updated 8 weeks ago by rjactonspsfcf • 10
3
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1
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137
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1
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How to make bed file for existing bim and fam file
fam bed bim plink written 8 weeks ago by Mazza • 10 • updated 8 weeks ago by Maxime Lamontagne • 1.8k
2
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1
answer
132
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1
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bed format, START always bigger than END, no matter which strand?
bed bowtie written 9 weeks ago by bxia • 90 • updated 9 weeks ago by Alex Reynolds ♦ 19k
1
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0
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116
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0
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Splitting the Spliced reads from genome Alignment
bedtools bed bedops bam spliced_reads written 9 weeks ago by EVR • 430
4
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1
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189
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1
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Intersection of a BED genes with multiple VCFs: report only if at least N intersection.
bedtools vcf wes bed intersection written 10 weeks ago by badredda • 10 • updated 10 weeks ago by Alex Reynolds ♦ 19k
19
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4
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14k
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11 follow
4
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Batch Fetching Fasta Sequences From Bed File
fasta bed written 6.3 years ago by Carl • 80 • updated 11 weeks ago by Maximilian Haeussler • 1.3k
1
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1
answer
812
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1
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Preparing a .bed for Homer annotation
homer annotatepeaks bed written 20 months ago by giroudpaul • 50 • updated 11 weeks ago by jiab • 10
0
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1
answer
169
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1
answer
How to extract sequence message from SAM?
bed sam sequencing written 11 weeks ago by Jeason Rad • 30 • updated 11 weeks ago by Pierre Lindenbaum ♦ 96k
7
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3
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208
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3
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Output bed file region sizes as histogram
bedtools bed bedops histogram written 3 months ago by mmmmcandrew • 60 • updated 3 months ago by Alex Reynolds ♦ 19k
7
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1
answer
269
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1
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Convert fasta to bed (no gtf available)
genome ensembl bed cds fasta written 3 months ago by bioinfo8 • 70
7
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1
answer
222
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1
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Convert cds .fa to bed
fasta ensembl bed cds ucsc written 3 months ago by bioinfo8 • 70
3
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1
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183
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1
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Generate bed file containing regions with no bigwig coverage
bed bigwig written 3 months ago by mmmmcandrew • 60 • updated 3 months ago by Pierre Lindenbaum ♦ 96k
2
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1
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164
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1
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Getting a gene list fom eCLIP bigBED file
bigbed bed eclip galaxy encode written 3 months ago by o.hickman • 10 • updated 3 months ago by Alex Reynolds ♦ 19k
0
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0
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235
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0
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Creating coverage files containing paired-end fragments of particular sizes
bed paired-end wig bigwig bam written 3 months ago by mmmmcandrew • 60
4
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0
answers
231
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0
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bedtools intersect bed and vcf, coordinates problem
bedtools bed vcf written 3 months ago by abascalfederico • 960
1
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2
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227
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6 follow
2
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compare peaks in a gene list (coordinates)
gene bed peaks chip-seq written 3 months ago by Lila M • 280 • updated 3 months ago by vchris_ngs • 3.6k
1
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1
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177
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1
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compute coverage with file.bam and bed : bedtools empty output
bedtools bed bam coverage written 3 months ago by noeD • 50 • updated 3 months ago by Devon Ryan ♦ 69k
3
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3
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5.3k
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3
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convert bed file to fasta file
fasta bed rna-seq conversion written 3.0 years ago by hana • 140 • updated 3 months ago by Alex Reynolds ♦ 19k
4
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2
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178
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2
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Finding minima from bigwig in specific regions from bed file
bed bigwig written 3 months ago by mmmmcandrew • 60 • updated 3 months ago by Alex Reynolds ♦ 19k
1
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1
answer
187
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1
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Get coordinate of several primer fasta sequence
fasta bed primers alignment coordinate written 4 months ago by sacha • 770
1
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1
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155
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1
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How to find Overlapping coordinates on their 3' or 5'?
bedtools bed intersection genomic coordinates written 4 months ago by A. Domingues • 1.4k • updated 4 months ago by Pierre Lindenbaum ♦ 96k
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