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<prev • 475 results • page 1 of 16 • next >
0
votes
1
answer
77
views
1
answer
Can I split a bed file into 1000bp bins and add up my read numbers?
genome bed alignment rna-seq written 1 day ago by jamesclark1996 • 0 • updated 23 hours ago by colindaven • 1.8k
54
votes
3
answers
24k
views
36 follow
3
answers
How To Get Bed File Containing Exons Of Canonical Transcripts And Their Corresponding Gene Symbols
bed biomart transcript ucsc written 5.8 years ago by pristanna • 560 • updated 7 days ago by knsvar • 10
25
votes
5
answers
19k
views
14 follow
5
answers
How Do I Convert Fa Files To Bed Format?
fasta bed written 7.9 years ago by Keziah • 70 • updated 18 days ago by john.major • 0
4
votes
1
answer
128
views
1
answer
Visualize short nucleotide sequences and some ranges on top
bed gff visualization written 28 days ago by mschmid • 110 • updated 27 days ago by bernatgel • 2.2k
0
votes
1
answer
911
views
1
answer
How to get a VCF file for all variants in a specific gene and specific exon?
vcf bed snp written 3.1 years ago by natarajan.padmaja • 10 • updated 4 weeks ago by DNAngel • 40
0
votes
0
answers
85
views
0
answers
BED to HDF5 in Python. Simple Script?
python hdf5 bed written 5 weeks ago by QVINTVS_FABIVS_MAXIMVS • 2.3k
1
vote
1
answer
111
views
1
answer
Merge overlapping intervals in a bed file containing different chromosomes
bed merge script written 6 weeks ago by dzisis1986 • 20 • updated 6 weeks ago by Pierre Lindenbaum ♦ 124k
9
votes
1
answer
148
views
1
answer
Limiting interval sizes with awk
bedtools bed bedops awk interval written 6 weeks ago by rbronste • 290
1
vote
1
answer
180
views
1
answer
gene_bodyCoverage.py No usable output...why?
genebody_coverage.py bed gff2bed rna-seq written 6 weeks ago by crcarroll • 10
2
votes
1
answer
145
views
1
answer
Bamtobed paired mate error
bedtools bed bedops bamtobed written 6 weeks ago by rbronste • 290 • updated 6 weeks ago by ATpoint ♦ 25k
3
votes
2
answers
248
views
2
answers
ggplot density plot across bed file
R bedops ggplot density plot bed written 6 weeks ago by rbronste • 290 • updated 6 weeks ago by Nicolas Rosewick ♦ 8.3k
3
votes
1
answer
98
views
1
answer
Filtering BED file for interval length
bedtools bed bedops written 6 weeks ago by rbronste • 290
2
votes
0
answers
781
views
0
answers
Understanding columns of ChIP-Seq BED file format
genome bed chip-seq sequencing written 10 weeks ago by singram • 0
1
vote
0
answers
178
views
0
answers
Problems with calculating gcskew functions in python
fasta python functions bed written 10 weeks ago by H.Chloe • 20
32
votes
6
answers
25k
views
19 follow
6
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 6.7 years ago by user • 820 • updated 10 weeks ago by ATpoint ♦ 25k
4
votes
1
answer
187
views
1
answer
Extracting reads mapping to CDS regions but not the first 45bp after ATG
bed bam rna-seq written 3 months ago by Adrian Pelin • 2.3k • updated 3 months ago by Pierre Lindenbaum ♦ 124k
0
votes
0
answers
135
views
0
answers
Gene names from mixed location BED file
bedtools bed bedops annotations written 3 months ago by rbronste • 290
37
votes
2
answers
14k
views
12 follow
2
answers
Looking For A Way To Count Total Length Of Regions Of Bed File
bed written 6.6 years ago by Yunfei Li • 300 • updated 3 months ago by demolidd77 • 40
8
votes
1
answer
1.3k
views
1
answer
Consensus of multiple BED files
bedtools bed written 3.1 years ago by bruce.moran • 650 • updated 4 months ago by Biostar ♦♦ 20
0
votes
0
answers
133
views
0
answers
What are the 4th and 5th column in ENCODE DNase enrichment files?
bed dnase encode chromatin accessibility written 4 months ago by hivemind • 10
3
votes
1
answer
156
views
1
answer
Modify reference fasta using bed file
fasta bed genome written 4 months ago by Rubal • 250 • updated 4 months ago by SMK • 1.9k
2
votes
1
answer
169
views
1
answer
Pathogenic Variants in a Genomic interval
bed clinvar pathogenic genomic interval written 4 months ago by tylertibetli • 0 • updated 4 months ago by Emily_Ensembl ♦ 19k
31
votes
6
answers
9.2k
views
17 follow
6
answers
How To Randomly Sample A Subset Of Lines From A Bed File
bed chip-seq written 6.0 years ago by bede.portz • 490 • updated 4 months ago by ATpoint ♦ 25k
18
votes
3
answers
23k
views
10 follow
3
answers
Any Method Of Converting Bigwig File Format Into Bed Format?
bed bigwig written 6.5 years ago by samwise.techno • 30 • updated 4 months ago by Samir • 180
2
votes
1
answer
250
views
1
answer
bedtools slop set start to -1
gtf bed slop bedtools written 4 months ago by Medhat ♦ 8.5k • updated 4 months ago by Alex Reynolds ♦ 29k
3
votes
1
answer
169
views
1
answer
List of tools that use BED as input
bed written 4 months ago by jnjeffrey2 • 10 • updated 4 months ago by Pierre Lindenbaum ♦ 124k
2
votes
1
answer
179
views
1
answer
Extract target region sequence with samtools but the output contains suquence exceeding the bed region
bed samtools written 5 months ago by xusijiamed • 0 • updated 5 months ago by i.sudbery ♦ 6.2k
1
vote
1
answer
239
views
1
answer
Graphing GC Bias in Sequence Capture
bed picard gcbias sequencing written 7 months ago by Jon17 • 10 • updated 5 months ago by trausch • 1.4k
2
votes
1
answer
431
views
1
answer
Is it possible to get .bed file of sequenced regions after NGS experiment?
bed ngs written 19 months ago by Adam • 20 • updated 5 months ago by Biostar ♦♦ 20
3
votes
1
answer
169
views
1
answer
awk to organize bed file
bed awk written 5 months ago by flogin • 150 • updated 5 months ago by finswimmer ♦ 12k
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