Showing: bedreset
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Visualize BEDPE file
bed hic igv written 4 days ago by ste.lu40
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2
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123
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Convert indel list with [-/A] notation to VCF with adjacent base
vcf bed faidx convert written 19 days ago by Chris Miller20k • updated 18 days ago by finswimmer9.0k
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6 follow
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bigWig to bed for regions above/below threshold
bed bigwig written 14 months ago by skanterakis100 • updated 5 weeks ago by oriolebaltimore60
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110
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Pindel output to BED file
sv bed format cnv pindel written 5 weeks ago by znl20710 • updated 5 weeks ago by Pierre Lindenbaum116k
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1
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159
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1
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175
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5 follow
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Pulling out interval adjoining regions
bedtools bed bedops interval written 8 weeks ago by rbronste230 • updated 8 weeks ago by Alex Reynolds27k
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138
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132
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130
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Read depth interval comparison
read depth bed bedops bam bedtools written 9 weeks ago by rbronste230 • updated 9 weeks ago by Pierre Lindenbaum116k
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2
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149
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2
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Extending BED intervals
bedtools bed bedops interval written 10 weeks ago by rbronste230 • updated 10 weeks ago by Alex Reynolds27k
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206
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find coverage of specific exomes from a bam file
bedtools genomecov bam coverage bed written 10 weeks ago by lait120 • updated 10 weeks ago by Pierre Lindenbaum116k
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103
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3
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132
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Querying Gemini database by using genomic coordinates from a bed file.
gemini bed database query written 11 weeks ago by eDNAuRNA0 • updated 11 weeks ago by finswimmer9.0k
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161
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1
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Find unique non overlapping intervals between two files?
bed written 11 weeks ago by a.rex170 • updated 11 weeks ago by harold.smith.tarheel4.2k
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1
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Convert bed12 to GFF
bed gff bed12 written 23 months ago by cmdcolin1.1k
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669
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1
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overlap BED files, but account for region name
overlap bed bedtools written 19 months ago by igor7.2k • updated 12 weeks ago by Biostar ♦♦ 20
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221
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Protein coding mm10 refseq bed
bed refseq mm10 written 3 months ago by rbronste230 • updated 12 weeks ago by vkkodali870
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1
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184
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1
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Parsing AME tsv file
ame tsv meme motif bed written 3 months ago by rbronste230
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1
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354
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9 follow
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129
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3
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How to extract sequence message from SAM?
bed sam sequencing written 20 months ago by Jeason Rad30 • updated 3 months ago by Biostar ♦♦ 20
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1
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1.3k
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1
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Bedtools with name and full header
bed written 2.9 years ago by bharata1803390 • updated 3 months ago by Biostar ♦♦ 20
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1
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1.1k
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1
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[Resolved] Adding a unique ID column to a bed file
data managment bed written 3.2 years ago by giroudpaul50 • updated 3 months ago by Biostar ♦♦ 20
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bed file with indels and SNVs
bed snp written 3 months ago by joselu60
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4
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How to identify consecutive (adjacent) genomic intervals
latest bed genomic intervals written 2.9 years ago by A. Domingues1.8k • updated 4 months ago by RamRS20k
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1.8k
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3
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150
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How do i extract rows from a bedfile that have a certain bedscore?
bed parse written 4 months ago by a.rex170 • updated 4 months ago by Alex Reynolds27k
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535
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bedtools closest - result for only the first query
bedtools software error closest bed written 10 months ago by yjyj0 • updated 4 months ago by Biostar ♦♦ 20
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