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<prev • 464 results • page 1 of 16 • next >
4
votes
1
answer
96
views
1
answer
Extracting reads mapping to CDS regions but not the first 45bp after ATG
bed bam rna-seq written 8 days ago by Adrian Pelin • 2.3k • updated 8 days ago by Pierre Lindenbaum ♦ 122k
0
votes
0
answers
82
views
0
answers
Gene names from mixed location BED file
bedtools bed bedops annotations written 13 days ago by rbronste • 260
36
votes
2
answers
13k
views
12 follow
2
answers
Looking For A Way To Count Total Length Of Regions Of Bed File
bed written 6.4 years ago by Yunfei Li • 290 • updated 4 weeks ago by demolidd77 • 40
8
votes
1
answer
1.2k
views
1
answer
Consensus of multiple BED files
bedtools bed written 2.9 years ago by bruce.moran • 620 • updated 6 weeks ago by Biostar ♦♦ 20
0
votes
0
answers
83
views
0
answers
What are the 4th and 5th column in ENCODE DNase enrichment files?
bed dnase encode chromatin accessibility written 6 weeks ago by hivemind • 10
1
vote
1
answer
91
views
1
answer
Modify reference fasta using bed file
fasta bed genome written 6 weeks ago by Rubal • 240 • updated 6 weeks ago by SMK • 1.8k
2
votes
1
answer
119
views
1
answer
Pathogenic Variants in a Genomic interval
bed clinvar pathogenic genomic interval written 6 weeks ago by tylertibetli • 0 • updated 6 weeks ago by Emily_Ensembl ♦ 18k
31
votes
6
answers
9.0k
views
17 follow
6
answers
How To Randomly Sample A Subset Of Lines From A Bed File
bed chip-seq written 5.8 years ago by bede.portz • 490 • updated 7 weeks ago by ATpoint ♦ 21k
18
votes
3
answers
21k
views
10 follow
3
answers
Any Method Of Converting Bigwig File Format Into Bed Format?
bed bigwig written 6.3 years ago by samwise.techno • 30 • updated 8 weeks ago by Samir • 170
2
votes
1
answer
160
views
1
answer
bedtools slop set start to -1
gtf bed slop bedtools written 8 weeks ago by Medhat ♦ 8.4k • updated 8 weeks ago by Alex Reynolds ♦ 28k
3
votes
1
answer
123
views
1
answer
List of tools that use BED as input
bed written 9 weeks ago by jnjeffrey2 • 10 • updated 9 weeks ago by Pierre Lindenbaum ♦ 122k
2
votes
1
answer
132
views
1
answer
Extract target region sequence with samtools but the output contains suquence exceeding the bed region
bed samtools written 11 weeks ago by xusijiamed • 0 • updated 11 weeks ago by i.sudbery ♦ 5.2k
1
vote
1
answer
178
views
1
answer
Graphing GC Bias in Sequence Capture
bed picard gcbias sequencing written 4 months ago by Jon17 • 10 • updated 12 weeks ago by trausch • 1.4k
2
votes
1
answer
374
views
1
answer
Is it possible to get .bed file of sequenced regions after NGS experiment?
bed ngs written 16 months ago by Adam • 20 • updated 12 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
120
views
1
answer
awk to organize bed file
bed awk written 3 months ago by flogin • 150 • updated 3 months ago by finswimmer ♦ 12k
5
votes
1
answer
154
views
1
answer
How to find total size of regions NOT in bigWig file
fasta bed genome written 3 months ago by Rubal • 240 • updated 3 months ago by ATpoint ♦ 21k
0
votes
0
answers
337
views
0
answers
MACS2: Missing Peaks in Bed file but Present in Bedgraph/Bigwig?
bed macs2 chip-seq bigwig allele-specific written 3 months ago by Ankit • 110
13
votes
1
answer
11k
views
5 follow
1
answer
Converstion of BED with scores into bigWig
bed bigwig conversion scores written 4.1 years ago by Leszek ♦ 4.0k • updated 3 months ago by msimmer92 • 200
5
votes
2
answers
207
views
2
answers
How does bedtools bamtobed calculate end position
bedtools bed bam written 3 months ago by timing • 0 • updated 3 months ago by John Marshall ♦ 1.7k
3
votes
1
answer
247
views
1
answer
converting Bed to Wig
overlap bed wig bigwig rtracklayer written 3 months ago by rahel14350 • 30 • updated 3 months ago by Alex Reynolds ♦ 28k
2
votes
2
answers
976
views
2
answers
Convert DiffBind output to standard BED or NarrowPeak format
bed diffbind chip-seq narrowpeak written 23 months ago by rbronste • 260 • updated 4 months ago by corinne_hutfilz • 0
4
votes
2
answers
248
views
2
answers
Edit score column in bed file
bedtools bed written 4 months ago by fr • 100 • updated 4 months ago by Alex Reynolds ♦ 28k
1
vote
3
answers
324
views
3
answers
Convert indel list with [-/A] notation to VCF with adjacent base
vcf bed faidx convert written 7 months ago by Chris Miller ♦ 21k • updated 4 months ago by or.yaacov • 0
0
votes
0
answers
264
views
0
answers
GC Bias in Sequence Capture - Analysis & Quantification
bed sequence capture picard gcbias sequencing written 5 months ago by jnowacki • 70 • updated 4 months ago by Biostar ♦♦ 20
0
votes
0
answers
206
views
0
answers
Depth of coverage of Bed file regions?
bedtools bed coverage genome written 5 months ago by Jon17 • 10 • updated 5 months ago by h.mon ♦ 27k
3
votes
2
answers
176
views
2
answers
Modify BED with poliregions
bed bash awk written 5 months ago by v82masae • 140 • updated 5 months ago by Pierre Lindenbaum ♦ 122k
5
votes
1
answer
250
views
7 follow
1
answer
Extract coverage from each nucleotide position of a genome in a bam file
bed bam coverage written 5 months ago by MAPK • 1.4k
8
votes
1
answer
373
views
7 follow
1
answer
How to report genomic intervals essentailly overlapping in all files?
bedtools bed bam written 5 months ago by lakhujanivijay ♦ 4.3k
11
votes
2
answers
4.5k
views
5 follow
2
answers
How to subset a bed or gtf file to some genes of interest?
gtf bed gene genome written 4.4 years ago by cyril-cros • 890 • updated 5 months ago by dimitrischat • 70
6
votes
1
answer
503
views
6 follow
1
answer
Why the list of genes in UCSC "knownGene" table is strikingly different than the list of genes in UCSC "known canonical" table?
bed ucsc tablebrowser hg19 written 5 months ago by lakhujanivijay ♦ 4.3k
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