Showing: bedreset
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7
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4
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1.3k
views
4
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How to identify consecutive (adjacent) genomic intervals
latest bed genomic intervals written 2.6 years ago by A. Domingues1.6k • updated 6 days ago by Ram17k
4
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2
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1.6k
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2
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3
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1
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74
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1
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How do i extract rows from a bedfile that have a certain bedscore?
bed parse written 10 days ago by a.rex150 • updated 10 days ago by Alex Reynolds25k
0
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2
answers
374
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2
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bedtools closest - result for only the first query
bedtools software error closest bed written 6 months ago by yjyj0 • updated 18 days ago by Biostar ♦♦ 20
2
votes
1
answer
129
views
1
answer
Error while trying to filter a .vcf.gz file with a bed.gz file
filter error bed file bed written 22 days ago by ricfoz20 • updated 22 days ago by Ram17k
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2
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158
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2
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0
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1
answer
144
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1
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VCF to Bed file format using GATK
vcf gatk rna-seq bed written 5 weeks ago by Sa0 • updated 5 weeks ago by chrchang5233.9k
2
votes
1
answer
934
views
1
answer
Convert bed12 to GFF
bed gff bed12 written 19 months ago by cmdcolin870 • updated 5 weeks ago by ta_awwad150
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2
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139
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6 follow
2
answers
why do bed files not contain information about the reference?
bed hg38 reference hg19 written 6 weeks ago by Marvin120 • updated 6 weeks ago by Friederike2.1k
2
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0
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132
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0
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1
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2
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Duplicate ID in bed file
bed duplicate id written 13 months ago by janhuang.cn90 • updated 7 weeks ago by Sergei Slavskii0
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2
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180
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7 follow
2
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Compute average score across multiple bed files
R chip-seq python bed written 8 weeks ago by Andy Lee20 • updated 8 weeks ago by ATpoint7.5k
2
votes
1
answer
203
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1
answer
Quick Way to Annotate a Bed File
bed written 9 weeks ago by gtasource20 • updated 9 weeks ago by colin.kern180
5
votes
1
answer
231
views
6 follow
1
answer
bam to vcf to .bed
vcf bed bam written 10 weeks ago by genomics Newbie10 • updated 10 weeks ago by finswimmer5.4k
30
votes
4
answers
22k
views
16 follow
4
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 5.6 years ago by user770 • updated 10 weeks ago by ATpoint7.5k
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1
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225
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1
answer
1
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2
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154
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comparing 2 long BED files in R in an efficient way
vcf bed written 11 weeks ago by Bogdan640 • updated 11 weeks ago by Devon Ryan84k
23
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5
answers
15k
views
13 follow
5
answers
How Do I Convert Fa Files To Bed Format?
fasta bed written 6.8 years ago by Keziah70 • updated 11 weeks ago by noahaus10
0
votes
0
answers
197
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0
answers
3
votes
1
answer
108
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1
answer
8
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1
answer
1.2k
views
6 follow
1
answer
Editing Bed file
bed sequence chip-seq alignment written 19 months ago by dimitrischat50 • updated 12 weeks ago by roberta.cracco0
16
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3
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294
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6 follow
3
answers
Obtaining rsIDs using BiomaRt or linux
R biomart snps rsid bed written 12 weeks ago by camerond10 • updated 12 weeks ago by Pierre Lindenbaum112k
1
vote
1
answer
276
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1
answer
4
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2
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2.0k
views
2
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Annotating/Finding "NNNNNN" scaffold gaps in genome assembly
bed ngs scaffolding assembly written 3.2 years ago by Adrian Pelin2.2k • updated 3 months ago by michael0
4
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2
answers
254
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2
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Combining multiple bedfiles
bedtools bed written 3 months ago by christacaggiano20 • updated 3 months ago by finswimmer5.4k
6
votes
1
answer
270
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1
answer
1
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2
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1.8k
views
2
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Converting from BED to SAF/GFF
saf bed gff featurecount written 21 months ago by ccag30 • updated 3 months ago by ATpoint7.5k
2
votes
1
answer
263
views
1
answer
How do I filter out transcripts with less than two exons
bedtools bed gff galaxy written 3 months ago by alex.v.nesta0 • updated 3 months ago by cpad01128.9k
0
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0
answers
244
views
0
answers
3
votes
1
answer
242
views
1
answer
cwlexec and cwltool not interpreting baseCommand the same way
bed cwl written 3 months ago by drkennetz340 • updated 3 months ago by Michael R. Crusoe1.0k
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