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<prev • 544 results • page 1 of 19 • next >
1
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1
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66
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1
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Location of the peaks from CHIP-seq data in the genome
chip-seq macs3 narrowpeak bed written 2 days ago by ja4123 • 0
1
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1
answer
142
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1
answer
Merge Peak Bed file to Granges
bed chip-seq granges written 19 days ago by wax4001 • 0 • updated 19 days ago by rpolicastro ♦ 3.2k
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4
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168
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5 follow
4
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how to combine two bed files using the same ID information
bed linux shell python written 24 days ago by szp770 • 0 • updated 24 days ago by Alex Reynolds ♦ 31k
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0
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99
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0
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bedmap to annotate bed file with GTF that was converted to BED produces way too many results
gtf bed bedmap written 5 weeks ago by Tawny • 170
0
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0
answers
104
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0
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How to delete rows with the same number in the bed file in usegalaxy
bed row column usegalaxy number written 5 weeks ago by Kian • 40
0
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0
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101
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0
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NarrowPeak files empty fields ENCODE
bed dnase-seq narrowpeak written 6 weeks ago by kimkes25 • 0
0
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1
answer
142
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1
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What exactly does the -fs flag (fragment size) do in bedtools genomecov/genomeCoverageBed?
bedtools bed bam read mapping written 6 weeks ago by kieft1bp • 0 • updated 6 weeks ago by ATpoint ♦ 44k
2
votes
2
answers
134
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2
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coverage of dnase-seq narrow peak file of genome
bed dnase-seq coverage written 6 weeks ago by kimkes25 • 0 • updated 6 weeks ago by ATpoint ♦ 44k
0
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1
answer
198
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1
answer
ucsc-bedgraphtobigwig installed but not working -bash: bedGraphToBigWig: command not found
bed bigwig anaconda ucsc written 7 weeks ago by enjolras • 0 • updated 6 weeks ago by e.rempel • 980
6
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1
answer
371
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1
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Extract data from a large bed file
genome bed alignment written 10 months ago by el24 • 10 • updated 6 weeks ago by Biostar ♦♦ 20
2
votes
1
answer
121
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1
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Count all (non N) nucleotides within regions defined in BED file
fasta bed written 7 weeks ago by William • 4.7k • updated 7 weeks ago by Prasad • 1.6k
1
vote
1
answer
166
views
1
answer
How to extract upstream and downstream of lncRNA in particular range?
gtf bed rna-seq hommer lncrna written 7 weeks ago by mathavanbioinfo • 60 • updated 7 weeks ago by jordi.planells • 330
1
vote
1
answer
199
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1
answer
Converting a BED file to FASTA
fasta bed conversion written 8 weeks ago by niveven • 0 • updated 7 weeks ago by Alex Reynolds ♦ 31k
3
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1
answer
158
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1
answer
Split reference genome into callable regions by splitting on NNNN stretches
fasta bed written 8 weeks ago by William • 4.7k • updated 8 weeks ago by Pierre Lindenbaum ♦ 133k
1
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0
answers
167
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0
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Subsetting a data by a regions from BED file
R bed written 10 weeks ago by A • 3.9k
4
votes
1
answer
183
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1
answer
Merge coordinates by gene ID
bedtools bed bedops bash written 11 weeks ago by r.tor • 40
0
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0
answers
132
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0
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Comparing Many Bed Files from GEO
geo bed chip-seq atac-seq meta-analysis written 12 weeks ago by cthangav • 0
43
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3
answers
18k
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17 follow
3
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Looking For A Way To Count Total Length Of Regions Of Bed File
bed written 7.8 years ago by Yunfei Li • 310 • updated 3 months ago by Bing • 0
0
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0
answers
141
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0
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How to keep the input bed coordinates of a bed?
bed liftover written 3 months ago by yunzhe.jiang97 • 0
6
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2
answers
178
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2
answers
retrieving rows from a bed file
bed written 3 months ago by kimkes25 • 0 • updated 3 months ago by Alex Reynolds ♦ 31k
1
vote
1
answer
204
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1
answer
bed file indexing problem
dnase1 bed tabix samtools bed file written 3 months ago by kimkes25 • 0
1
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1
answer
239
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1
answer
How to download BED file with all the fields?
bed ucsc written 3 months ago by kimkes25 • 0
2
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1
answer
191
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1
answer
NarrowPeak format -Peak field
bed chip-seq dnase-seq written 3 months ago by kimkes25 • 0 • updated 3 months ago by ATpoint ♦ 44k
0
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1
answer
185
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1
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How to create a file with annotation track distribution over 1mb bin across a genome
genome bed visualization annotation-track bedgraph written 3 months ago by dabitz66 • 0 • updated 3 months ago by Jorge Amigo ♦ 12k
0
votes
0
answers
208
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0
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Visualizing a bigwig ChIP-seq file over a region determined by a bed ChIP-seq file
bed sequencing correlation chip-seq bigwig written 3 months ago by topalsalih • 0
1
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2
answers
197
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2
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Issues with reading .bed files and compressing output in a specific format
bed python gzip written 4 months ago by dk0319 • 20 • updated 3 months ago by Jorge Amigo ♦ 12k
0
votes
0
answers
239
views
0
answers
How to extract a subset of samples from plink .bed files
bed plink ped written 4 months ago by eyb • 190
3
votes
1
answer
458
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1
answer
all coding regions .bed file hg38 Whole Genome Sequencing
wgs coding bed written 4 months ago by cocchi.e89 • 120 • updated 4 months ago by Pierre Lindenbaum ♦ 133k
7
votes
3
answers
12k
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5 follow
3
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Wiggle File 2 Bed File
bed wiggle format conversion written 9.0 years ago by Varun Gupta • 1.2k • updated 4 months ago by Biostar ♦♦ 20
3
votes
1
answer
176
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1
answer
edit FASTA file according to range positions
fasta bed alignment samtools written 4 months ago by Begonia_pavonina • 20
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