Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: bed • reset
or   Classic search
<prev • 414 results • page 1 of 14 • next >
7
votes
4
answers
1.3k
views
4
answers
How to identify consecutive (adjacent) genomic intervals
latest bed genomic intervals written 2.6 years ago by A. Domingues • 1.6k • updated 6 days ago by Ram ♦ 17k
4
votes
2
answers
1.6k
views
2
answers
split bed file into several bed files where each region is separated of any other by N bases
bedtools bed bedops written 2.6 years ago by 14134125465346445 • 3.4k • updated 7 days ago by Ram ♦ 17k
3
votes
1
answer
74
views
1
answer
How do i extract rows from a bedfile that have a certain bedscore?
bed parse written 10 days ago by a.rex • 150 • updated 10 days ago by Alex Reynolds ♦ 25k
0
votes
2
answers
374
views
2
answers
bedtools closest - result for only the first query
bedtools software error closest bed written 6 months ago by yjyj • 0 • updated 18 days ago by Biostar ♦♦ 20
2
votes
1
answer
129
views
1
answer
Error while trying to filter a .vcf.gz file with a bed.gz file
filter error bed file bed written 22 days ago by ricfoz • 20 • updated 22 days ago by Ram ♦ 17k
2
votes
2
answers
158
views
2
answers
Is it possible to generate a BED/BEDGRAPH containing every dinucleotide in the genome?
genome bed written 4 weeks ago by dansapozhnikov • 10 • updated 4 weeks ago by dr_bantz • 80
0
votes
1
answer
144
views
1
answer
VCF to Bed file format using GATK
vcf gatk rna-seq bed written 5 weeks ago by Sa • 0 • updated 5 weeks ago by chrchang523 ♦ 3.9k
2
votes
1
answer
934
views
1
answer
Convert bed12 to GFF
bed gff bed12 written 19 months ago by cmdcolin • 870 • updated 5 weeks ago by ta_awwad • 150
12
votes
2
answers
139
views
6 follow
2
answers
why do bed files not contain information about the reference?
bed hg38 reference hg19 written 6 weeks ago by Marvin • 120 • updated 6 weeks ago by Friederike • 2.1k
2
votes
0
answers
132
views
0
answers
Get the regions mapped by the same reads
reads bed bam multiple alignments sam written 6 weeks ago by Corentin • 170
1
vote
2
answers
927
views
2
answers
Duplicate ID in bed file
bed duplicate id written 13 months ago by janhuang.cn • 90 • updated 7 weeks ago by Sergei Slavskii • 0
6
votes
2
answers
180
views
7 follow
2
answers
Compute average score across multiple bed files
R chip-seq python bed written 8 weeks ago by Andy Lee • 20 • updated 8 weeks ago by ATpoint ♦ 7.5k
2
votes
1
answer
203
views
1
answer
Quick Way to Annotate a Bed File
bed written 9 weeks ago by gtasource • 20 • updated 9 weeks ago by colin.kern • 180
5
votes
1
answer
231
views
6 follow
1
answer
bam to vcf to .bed
vcf bed bam written 10 weeks ago by genomics Newbie • 10 • updated 10 weeks ago by finswimmer ♦ 5.4k
30
votes
4
answers
22k
views
16 follow
4
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 5.6 years ago by user • 770 • updated 10 weeks ago by ATpoint ♦ 7.5k
0
votes
1
answer
225
views
1
answer
Merge multiple BED files (multiple intersect) with average score
bed written 10 weeks ago by neuro3030 • 0
1
vote
2
answers
154
views
2
answers
comparing 2 long BED files in R in an efficient way
vcf bed written 11 weeks ago by Bogdan • 640 • updated 11 weeks ago by Devon Ryan ♦ 84k
23
votes
5
answers
15k
views
13 follow
5
answers
How Do I Convert Fa Files To Bed Format?
fasta bed written 6.8 years ago by Keziah • 70 • updated 11 weeks ago by noahaus • 10
0
votes
0
answers
197
views
0
answers
How to create a BED file for liftOver form Plink .bed .bim and .fam filed
bed plink liftover written 12 weeks ago by o.ajnakina • 10
3
votes
1
answer
108
views
1
answer
Cutting part of a column in a bed file
bed cut edit written 12 weeks ago by roberta.cracco • 0
8
votes
1
answer
1.2k
views
6 follow
1
answer
Editing Bed file
bed sequence chip-seq alignment written 19 months ago by dimitrischat • 50 • updated 12 weeks ago by roberta.cracco • 0
16
votes
3
answers
294
views
6 follow
3
answers
Obtaining rsIDs using BiomaRt or linux
R biomart snps rsid bed written 12 weeks ago by camerond • 10 • updated 12 weeks ago by Pierre Lindenbaum ♦ 112k
1
vote
1
answer
276
views
1
answer
Plot multiple bed files using R package Gviz
R .bed gvi bed plot written 3 months ago by genie66 • 20
4
votes
2
answers
2.0k
views
2
answers
Annotating/Finding "NNNNNN" scaffold gaps in genome assembly
bed ngs scaffolding assembly written 3.2 years ago by Adrian Pelin • 2.2k • updated 3 months ago by michael • 0
4
votes
2
answers
254
views
2
answers
Combining multiple bedfiles
bedtools bed written 3 months ago by christacaggiano • 20 • updated 3 months ago by finswimmer ♦ 5.4k
6
votes
1
answer
270
views
1
answer
BED file : error in naming chromosome's column
bed ngs written 3 months ago by anais1396 • 20
1
vote
2
answers
1.8k
views
2
answers
Converting from BED to SAF/GFF
saf bed gff featurecount written 21 months ago by ccag • 30 • updated 3 months ago by ATpoint ♦ 7.5k
2
votes
1
answer
263
views
1
answer
How do I filter out transcripts with less than two exons
bedtools bed gff galaxy written 3 months ago by alex.v.nesta • 0 • updated 3 months ago by cpad0112 • 8.9k
0
votes
0
answers
244
views
0
answers
How to compute target aligned reads/total aligned reads (read enrichment) with Python?
bed bam pybedtools pysam written 3 months ago by vw • 10
3
votes
1
answer
242
views
1
answer
cwlexec and cwltool not interpreting baseCommand the same way
bed cwl written 3 months ago by drkennetz • 340 • updated 3 months ago by Michael R. Crusoe • 1.0k
<prev • 414 results • page 1 of 14 • next >
Recent Votes
Recent Locations • All »
  • UK, U. Glasgow, just now
  • Houston, TX, 1 minute ago
  • Russia/Moscow/Institute of Molecular Genetics of the Russian Academy of Sciences, 6 minutes ago
  • United Kingdom, 6 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 730 users visited in the last hour