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2
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130
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bedgraph.sorted or wig to .cov files?
bedgraph.sorted wig coverage bedgraph written 4 weeks ago by arshkhaira • 10 • updated 4 weeks ago by Shalu Jhanwar • 400
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63
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How to use pybedtools bedgraph to bigwig using Ensembl genomes
ensembl bedgraph python2 bigwig.py pybedtools written 7 weeks ago by frymor2 • 10
6
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2
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120
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2
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What are these files?
geo bed rnaseq bedgraph written 7 weeks ago by ebs15242 • 10 • updated 7 weeks ago by jared.andrews07 ♦ 6.4k
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133
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EPIC methylation manifest GRch38 query
epic bedgraph coordinates methylation cpg written 8 weeks ago by prasundutta87 • 360
1
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1
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225
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5 follow
1
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Calculate correlations between ChipSeq data sets
peaks chipseq macs2 correlation bedgraph written 5 months ago by Assa Yeroslaviz • 1.4k • updated 5 months ago by Rory Stark • 730
4
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1
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161
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1
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sorting for bedtools genomecov doesn't work properly
bedtools bedpe sort rna-seq bedgraph written 5 months ago by Assa Yeroslaviz • 1.4k • updated 5 months ago by Kevin Blighe ♦ 63k
1
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1
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317
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1
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Plotting Bedgraph with multiple chromosome
bedgraph sushi R written 6 months ago by jaqx008 • 70
3
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1
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600
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1
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variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 23 months ago by m93 • 240 • updated 6 months ago by Biostar ♦♦ 20
3
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1
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483
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5 follow
1
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GEO database - how to use their bedgraph files
bedgraph rna-seq written 9 months ago by Suicyte • 10 • updated 9 months ago by Luis Nassar • 390
1
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783
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Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 15 months ago by mmaqueda • 0 • updated 12 months ago by Biostar ♦♦ 20
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301
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Overlapping Bedgraph - Microarray ChIP to BigWig for Clustering analysis
bedgraph chip bigwig microarray heatmap written 13 months ago by Hushus • 20
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2
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4.1k
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2
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Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 4.6 years ago by Sam • 90 • updated 14 months ago by Simply Bioinformatics • 170
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2.1k
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2
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Generating a bedgraph from a scored bed file
genome bedtools chip-seq coverage bedgraph written 5.4 years ago by Matt Corley • 40 • updated 16 months ago by Biostar ♦♦ 20
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799
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1
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Seqmonk: Bedgraph as input ? (EPIC methylation array data)
seqmonk bedgraph probe design methylation written 19 months ago by Ankit • 140 • updated 18 months ago by Charles Warden ♦ 7.8k
2
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1
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642
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1
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Transform Bedgraph counts into Gene Counts (DESeq2 input)
bedgraph gene counts counts written 18 months ago by LuisNagano • 40 • updated 18 months ago by gocougs • 20
4
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3
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1.2k
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3
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Visualizing CNV data based from bed or bedgraph format
R igv bedgraph cnv bed written 18 months ago by sm.hashemin • 90
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568
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bedgraph file format in IGV: good for observing CNV ?
bedgraph cnv igv written 20 months ago by Pin.Bioinf • 270
1
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0
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925
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0
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Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 23 months ago by m93 • 240 • updated 21 months ago by Biostar ♦♦ 20
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3
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2.0k
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3
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BigWig library for Java
bedgraph java bigwig written 5.8 years ago by bow • 790 • updated 22 months ago by holgerbrandl • 30
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1
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1.3k
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1
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Output bedGraph from genomeCoverageBed is missing "chr"
bedgraph bigwig genomecoveragebed rna-seq ucsc written 23 months ago by m93 • 240 • updated 23 months ago by RamRS ♦ 28k
7
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1
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5 follow
1
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Stranded RNA-seq data visualization in UCSC
bedgraph visualization rna-seq stranded written 2.0 years ago by marina.v.yurieva • 520 • updated 2.0 years ago by Rob ♦ 4.1k
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1.1k
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"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 5.7 years ago by akivab2 • 100 • updated 2.0 years ago by Biostar ♦♦ 20
0
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0
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352
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What should you do if you don't know the wig file is based on GRCH37 or GRCH38?
bedgraph wig written 2.0 years ago by Shicheng Guo • 8.3k
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1.0k
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0
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bedGraph compress tools
bedtools bedgraph written 2.0 years ago by marina.v.yurieva • 520
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1
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1.2k
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1
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How to extrach gene names and peaks from BedGraph or BigWig files
peak bedgraph chip-seq bigwig written 2.3 years ago by hkarakurt • 100 • updated 2.3 years ago by Devon Ryan ♦ 96k
5
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2
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3.4k
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5 follow
2
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plot a bedgraph
bed bedgraph rna-seq plot written 2.4 years ago by sacha • 1.9k
0
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0
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667
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0
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genome-wide gene occupancy profiles
bedgraph chip-seq occupany profile written 2.9 years ago by Assa Yeroslaviz • 1.4k
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2
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1.4k
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2
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How to merge bedGraph records which are next to each other and have the same score?
bedgraph written 3.0 years ago by James Ashmore • 3.0k • updated 3.0 years ago by geek_y ♦ 11k
2
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1
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1
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Effectively search for positions in large bedgraph files using python (or other language if needed)
bedgraph python written 3.1 years ago by DVA • 540 • updated 3.1 years ago by Alex Reynolds ♦ 30k
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2.1k
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1
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Visualising BedGraph files on UCSC [custom tracks]
genome bedgraph visualisation ucsc written 3.2 years ago by anu014 • 180 • updated 3.2 years ago by Arup Ghosh ♦ 2.7k
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