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converting bedgraph to Bigwig by HOMER
homer bigwig bedgraph chip-seq bioinformatics written 53 minutes ago by saha.shagnik • 0
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40
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bedGraphToBigWig error : Expecting at least 3 words line 1 of chrom.sizes. got 2
bedgraph bigwig written 4 days ago by pt.taklifi • 60 • updated 4 days ago by ATpoint ♦ 46k
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In methylation sequencing, what does BedGraph value stand for?
bedgraph methylaion bismark methylation sequencing written 6 weeks ago by kwanghoon • 20
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bedGraphToBigWig: error while loading shared libraries: libpng12.so.0: cannot open shared object file: No such file or directory
software error bedgraph bigwig written 9 weeks ago by hsu • 30 • updated 9 weeks ago by Pierre Lindenbaum ♦ 134k
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How to create a file with annotation track distribution over 1mb bin across a genome
genome bed visualization annotation-track bedgraph written 5 months ago by dabitz66 • 0 • updated 5 months ago by Jorge Amigo ♦ 12k
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bedgraph.sorted or wig to .cov files?
bedgraph.sorted wig coverage bedgraph written 7 months ago by arshkhaira • 10 • updated 7 months ago by Shalu Jhanwar • 490
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How to use pybedtools bedgraph to bigwig using Ensembl genomes
ensembl bedgraph python2 bigwig.py pybedtools written 8 months ago by frymor2 • 10
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240
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What are these files?
geo bed rnaseq bedgraph written 8 months ago by ebs15242 • 10 • updated 8 months ago by jared.andrews07 ♦ 8.7k
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EPIC methylation manifest GRch38 query
epic bedgraph coordinates methylation cpg written 8 months ago by prasundutta87 • 420
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5 follow
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Calculate correlations between ChipSeq data sets
peaks chipseq macs2 correlation bedgraph written 12 months ago by Assa Yeroslaviz • 1.4k • updated 12 months ago by Rory Stark • 920
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1
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sorting for bedtools genomecov doesn't work properly
bedtools bedpe sort rna-seq bedgraph written 12 months ago by Assa Yeroslaviz • 1.4k • updated 12 months ago by Kevin Blighe ♦ 71k
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Plotting Bedgraph with multiple chromosome
bedgraph sushi R written 12 months ago by jaqx008 • 90
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variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 2.5 years ago by m98 • 290 • updated 13 months ago by Biostar ♦♦ 20
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5 follow
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GEO database - how to use their bedgraph files
bedgraph rna-seq written 16 months ago by Suicyte • 10 • updated 16 months ago by Luis Nassar • 420
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Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 22 months ago by mmaqueda • 0 • updated 19 months ago by Biostar ♦♦ 20
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Overlapping Bedgraph - Microarray ChIP to BigWig for Clustering analysis
bedgraph chip bigwig microarray heatmap written 20 months ago by Hushus • 20
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Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 5.2 years ago by Sam • 90 • updated 21 months ago by Simply Bioinformatics • 180
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Generating a bedgraph from a scored bed file
genome bedtools chip-seq coverage bedgraph written 6.0 years ago by Matt Corley • 40 • updated 23 months ago by Biostar ♦♦ 20
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Seqmonk: Bedgraph as input ? (EPIC methylation array data)
seqmonk bedgraph probe design methylation written 2.2 years ago by Ankit • 170 • updated 2.1 years ago by Charles Warden ♦ 8.0k
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Transform Bedgraph counts into Gene Counts (DESeq2 input)
bedgraph gene counts counts written 2.1 years ago by LuisNagano • 80 • updated 2.1 years ago by gocougs • 20
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Visualizing CNV data based from bed or bedgraph format
R igv bedgraph cnv bed written 2.1 years ago by sm.hashemin • 90
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bedgraph file format in IGV: good for observing CNV ?
bedgraph cnv igv written 2.3 years ago by Pin.Bioinf • 290
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Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 2.5 years ago by m98 • 290 • updated 2.3 years ago by Biostar ♦♦ 20
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BigWig library for Java
bedgraph java bigwig written 6.3 years ago by bow • 790 • updated 2.4 years ago by holgerbrandl • 30
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Output bedGraph from genomeCoverageBed is missing "chr"
bedgraph bigwig genomecoveragebed rna-seq ucsc written 2.5 years ago by m98 • 290 • updated 2.5 years ago by Ram ♦ 32k
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5 follow
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Stranded RNA-seq data visualization in UCSC
bedgraph visualization rna-seq stranded written 2.6 years ago by marina.v.yurieva • 550 • updated 2.6 years ago by Rob ♦ 4.6k
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"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 6.3 years ago by akivab2 • 100 • updated 2.6 years ago by Biostar ♦♦ 20
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What should you do if you don't know the wig file is based on GRCH37 or GRCH38?
bedgraph wig written 2.6 years ago by Shicheng Guo • 8.6k
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bedGraph compress tools
bedtools bedgraph written 2.6 years ago by marina.v.yurieva • 550
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How to extrach gene names and peaks from BedGraph or BigWig files
peak bedgraph chip-seq bigwig written 2.9 years ago by hkarakurt • 110 • updated 2.9 years ago by Devon Ryan ♦ 98k
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