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3
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variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 11 days ago by m93 • 90 • updated 9 days ago by RamRS ♦ 17k
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79
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Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 14 days ago by m93 • 90
3
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1
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164
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Output bedGraph from genomeCoverageBed is missing "chr"
bedgraph bigwig genomecoveragebed rna-seq ucsc written 15 days ago by m93 • 90 • updated 14 days ago by RamRS ♦ 17k
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5 follow
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Stranded RNA-seq data visualization in UCSC
bedgraph visualization rna-seq stranded written 6 weeks ago by marina.v.yurieva • 470 • updated 6 weeks ago by Rob ♦ 2.6k
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785
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"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 3.8 years ago by akivab2 • 60 • updated 6 weeks ago by Biostar ♦♦ 20
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99
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What should you do if you don't know the wig file is based on GRCH37 or GRCH38?
bedgraph wig written 7 weeks ago by Shicheng Guo • 6.5k
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190
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bedGraph compress tools
bedtools bedgraph written 7 weeks ago by marina.v.yurieva • 470
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1
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291
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1
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How to extrach gene names and peaks from BedGraph or BigWig files
peak bedgraph chip-seq bigwig written 5 months ago by hkarakurt • 30 • updated 5 months ago by Devon Ryan ♦ 84k
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2
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509
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2
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plot a bedgraph
bed bedgraph rna-seq plot written 6 months ago by sacha • 1.5k
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298
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0
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genome-wide gene occupancy profiles
bedgraph chip-seq occupany profile written 12 months ago by Assa Yeroslaviz • 1.1k
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2
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617
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2
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How to merge bedGraph records which are next to each other and have the same score?
bedgraph written 13 months ago by James Ashmore • 2.5k • updated 13 months ago by geek_y ♦ 8.7k
2
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1
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524
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1
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Effectively search for positions in large bedgraph files using python (or other language if needed)
bedgraph python written 14 months ago by DVA • 480 • updated 14 months ago by Alex Reynolds ♦ 25k
4
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1
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706
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1
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Visualising BedGraph files on UCSC [custom tracks]
genome bedgraph visualisation ucsc written 15 months ago by anu014 • 150 • updated 15 months ago by arup • 480
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1
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Difference between 'bedgraph' and 'bw' files
bedgraph bw written 19 months ago by biotech • 510 • updated 19 months ago by igor ♦ 6.6k
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How to create a bedGraph file for broadPeak peak caller?
bedgraph broadpeak chip-seq peak calling written 2.7 years ago by mrs.hope • 10 • updated 21 months ago by 569497735 • 0
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Merge hundreds bedgraph files with unionbedg in one bash line
bedgraph merge xargs bash written 22 months ago by Shicheng Guo • 6.5k
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1.2k
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1
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Relationship of bedGraph to wig.
bedgraph wiggle wig chip-seq written 2.0 years ago by ariel.balter • 130 • updated 2.0 years ago by Devon Ryan ♦ 84k
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1
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751
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1
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Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
genome bed coordinates sequencing bedgraph written 2.4 years ago by biohack92 • 130 • updated 2.4 years ago by Alex Reynolds ♦ 25k
3
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1
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956
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1
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How do I replace a value used in script with a range of values in a file?
bioinformatics awk bedgraph written 2.5 years ago by josephmccarter1 • 60 • updated 2.5 years ago by tomc • 80
0
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1
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1
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Two UCSC bedgraph tracks next to each other
custom track ucsc bedgraph written 3.1 years ago by kevin.wyatt.mcmahon • 0 • updated 2.5 years ago by Chirag Nepal • 2.1k
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Is there a simple way to get the max coverage of a bedgraph file in python?
python bedgraph written 2.5 years ago by rioualen • 280 • updated 2.5 years ago by Alex Reynolds ♦ 25k
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3
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Sum column until a certain value is reached then print that line
bioinformatics awk bedgraph written 2.5 years ago by josephmccarter1 • 60 • updated 2.5 years ago by John ♦ 12k
5
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1
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1
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Bed to BedGraph
bioinformatics bed dapars rna-seq bedgraph written 2.6 years ago by abc • 30 • updated 2.6 years ago by dally • 160
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1
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2.2k
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1
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Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 2.7 years ago by Sam • 70 • updated 2.7 years ago by Devon Ryan ♦ 84k
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1
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1.6k
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UCSC BedGraph Issue
bedgraph ucsc kent methylation written 3.2 years ago by mbio.kyle • 270 • updated 3.2 years ago by Maximilian Haeussler • 1.3k
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GEM mappability > wig/bedgraph : how to interprete
interpretation gem wiggle mappbility bedgraph written 3.5 years ago by mehran.karimzade • 140
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Generating a bedgraph from a scored bed file
genome bedtools chip-seq coverage bedgraph written 3.5 years ago by Matt Corley • 40 • updated 3.5 years ago by Alex Reynolds ♦ 25k
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884
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Tool: tools to get coverage of a particular transcript from bedgraph
bedgraph tools tool written 3.7 years ago by manauwer_raza • 0
5
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viewing BED Graph files on the IGB
bedgraph arabidopsis igb written 3.8 years ago by akivab2 • 60 • updated 3.8 years ago by Ann • 2.2k
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BigWig library for Java
bedgraph java bigwig written 3.9 years ago by bow • 770 • updated 3.8 years ago by dariober ♦ 9.4k
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