Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: bedgraph • reset
or   Classic search
<prev • 39 results • page 1 of 2 • next >
0
votes
0
answers
76
views
0
answers
Overlapping Bedgraph - Microarray ChIP to BigWig for Clustering analysis
bedgraph chip bigwig microarray heatmap written 29 days ago by Hushus • 20
0
votes
2
answers
3.0k
views
2
answers
Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 3.6 years ago by Sam • 70 • updated 7 weeks ago by Simply Bioinformatics • 150
1
vote
0
answers
171
views
0
answers
Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 9 weeks ago by mmaqueda • 0 • updated 9 weeks ago by ATpoint ♦ 19k
5
votes
2
answers
1.6k
views
2
answers
Generating a bedgraph from a scored bed file
genome bedtools chip-seq coverage bedgraph written 4.3 years ago by Matt Corley • 40 • updated 3 months ago by Biostar ♦♦ 20
0
votes
1
answer
391
views
1
answer
Seqmonk: Bedgraph as input ? (EPIC methylation array data)
seqmonk bedgraph probe design methylation written 6 months ago by Ankit • 110 • updated 5 months ago by Charles Warden ♦ 7.0k
2
votes
1
answer
227
views
1
answer
Transform Bedgraph counts into Gene Counts (DESeq2 input)
bedgraph gene counts counts written 5 months ago by LuisNagano • 10 • updated 5 months ago by gocougs • 20
4
votes
3
answers
369
views
3
answers
Visualizing CNV data based from bed or bedgraph format
R igv bedgraph cnv bed written 5 months ago by sm.hashemin • 80
1
vote
0
answers
278
views
0
answers
bedgraph file format in IGV: good for observing CNV ?
bedgraph cnv igv written 7 months ago by Pin.Bioinf • 250
1
vote
0
answers
395
views
0
answers
Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 10 months ago by m93 • 150 • updated 8 months ago by Biostar ♦♦ 20
7
votes
3
answers
1.7k
views
3
answers
BigWig library for Java
bedgraph java bigwig written 4.7 years ago by bow • 790 • updated 9 months ago by holgerbrandl • 30
3
votes
1
answer
338
views
1
answer
variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 10 months ago by m93 • 150 • updated 10 months ago by RamRS ♦ 23k
5
votes
1
answer
607
views
1
answer
Output bedGraph from genomeCoverageBed is missing "chr"
bedgraph bigwig genomecoveragebed rna-seq ucsc written 10 months ago by m93 • 150 • updated 10 months ago by RamRS ♦ 23k
7
votes
1
answer
596
views
5 follow
1
answer
Stranded RNA-seq data visualization in UCSC
bedgraph visualization rna-seq stranded written 11 months ago by marina.v.yurieva • 480 • updated 11 months ago by Rob ♦ 3.4k
0
votes
0
answers
918
views
0
answers
"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 4.6 years ago by akivab2 • 100 • updated 11 months ago by Biostar ♦♦ 20
0
votes
0
answers
218
views
0
answers
What should you do if you don't know the wig file is based on GRCH37 or GRCH38?
bedgraph wig written 11 months ago by Shicheng Guo • 7.6k
1
vote
0
answers
502
views
0
answers
bedGraph compress tools
bedtools bedgraph written 11 months ago by marina.v.yurieva • 480
1
vote
1
answer
731
views
1
answer
How to extrach gene names and peaks from BedGraph or BigWig files
peak bedgraph chip-seq bigwig written 15 months ago by hkarakurt • 60 • updated 15 months ago by Devon Ryan ♦ 91k
5
votes
2
answers
1.8k
views
5 follow
2
answers
plot a bedgraph
bed bedgraph rna-seq plot written 16 months ago by sacha • 1.8k
0
votes
0
answers
489
views
0
answers
genome-wide gene occupancy profiles
bedgraph chip-seq occupany profile written 22 months ago by Assa Yeroslaviz • 1.2k
5
votes
2
answers
971
views
2
answers
How to merge bedGraph records which are next to each other and have the same score?
bedgraph written 23 months ago by James Ashmore • 2.6k • updated 23 months ago by geek_y ♦ 9.8k
2
votes
1
answer
866
views
1
answer
Effectively search for positions in large bedgraph files using python (or other language if needed)
bedgraph python written 2.0 years ago by DVA • 530 • updated 2.0 years ago by Alex Reynolds ♦ 28k
4
votes
1
answer
1.3k
views
1
answer
Visualising BedGraph files on UCSC [custom tracks]
genome bedgraph visualisation ucsc written 2.1 years ago by anu014 • 160 • updated 2.1 years ago by arup • 1.5k
2
votes
1
answer
3.0k
views
1
answer
Difference between 'bedgraph' and 'bw' files
bedgraph bw written 2.4 years ago by biotech • 540 • updated 2.4 years ago by igor ♦ 8.0k
0
votes
1
answer
1.8k
views
1
answer
How to create a bedGraph file for broadPeak peak caller?
bedgraph broadpeak chip-seq peak calling written 3.5 years ago by mrs.hope • 10 • updated 2.6 years ago by 569497735 • 0
0
votes
0
answers
1.1k
views
0
answers
Merge hundreds bedgraph files with unionbedg in one bash line
bedgraph merge xargs bash written 2.7 years ago by Shicheng Guo • 7.6k
0
votes
1
answer
1.6k
views
1
answer
Relationship of bedGraph to wig.
bedgraph wiggle wig chip-seq written 2.9 years ago by ariel.balter • 140 • updated 2.9 years ago by Devon Ryan ♦ 91k
1
vote
1
answer
979
views
1
answer
Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
genome bed coordinates sequencing bedgraph written 3.3 years ago by biohack92 • 150 • updated 3.3 years ago by Alex Reynolds ♦ 28k
3
votes
1
answer
1.2k
views
1
answer
How do I replace a value used in script with a range of values in a file?
bioinformatics awk bedgraph written 3.3 years ago by josephmccarter1 • 70 • updated 3.3 years ago by tomc • 80
0
votes
1
answer
990
views
1
answer
Two UCSC bedgraph tracks next to each other
custom track ucsc bedgraph written 3.9 years ago by kevin.wyatt.mcmahon • 0 • updated 3.3 years ago by Chirag Nepal • 2.2k
1
vote
2
answers
926
views
2
answers
Is there a simple way to get the max coverage of a bedgraph file in python?
python bedgraph written 3.3 years ago by rioualen • 380 • updated 3.3 years ago by Alex Reynolds ♦ 28k
<prev • 39 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • United States, 3 minutes ago
  • USA, 4 minutes ago
  • India, 5 minutes ago
  • Mexico, 11 minutes ago
  • Seattle,WA, USA, 13 minutes ago
  • USA, 16 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1026 users visited in the last hour