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Seqmonk: Bedgraph as input ? (EPIC methylation array data)
seqmonk bedgraph probe design methylation written 21 days ago by Ankit • 60
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bedgraph file format in IGV: good for observing CNV ?
bedgraph cnv igv written 7 weeks ago by Pin.Bioinf • 210
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Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 4 months ago by m93 • 130 • updated 10 weeks ago by Biostar ♦♦ 20
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BigWig library for Java
bedgraph java bigwig written 4.2 years ago by bow • 780 • updated 12 weeks ago by holgerbrandl • 30
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variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 4 months ago by m93 • 130 • updated 4 months ago by RamRS ♦ 20k
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Output bedGraph from genomeCoverageBed is missing "chr"
bedgraph bigwig genomecoveragebed rna-seq ucsc written 4 months ago by m93 • 130 • updated 4 months ago by RamRS ♦ 20k
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Stranded RNA-seq data visualization in UCSC
bedgraph visualization rna-seq stranded written 5 months ago by marina.v.yurieva • 470 • updated 5 months ago by Rob ♦ 2.9k
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"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 4.1 years ago by akivab2 • 60 • updated 5 months ago by Biostar ♦♦ 20
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What should you do if you don't know the wig file is based on GRCH37 or GRCH38?
bedgraph wig written 5 months ago by Shicheng Guo • 7.3k
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bedGraph compress tools
bedtools bedgraph written 5 months ago by marina.v.yurieva • 470
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How to extrach gene names and peaks from BedGraph or BigWig files
peak bedgraph chip-seq bigwig written 9 months ago by hkarakurt • 30 • updated 9 months ago by Devon Ryan ♦ 87k
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plot a bedgraph
bed bedgraph rna-seq plot written 9 months ago by sacha • 1.6k
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genome-wide gene occupancy profiles
bedgraph chip-seq occupany profile written 16 months ago by Assa Yeroslaviz • 1.1k
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How to merge bedGraph records which are next to each other and have the same score?
bedgraph written 17 months ago by James Ashmore • 2.5k • updated 17 months ago by geek_y ♦ 8.8k
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Effectively search for positions in large bedgraph files using python (or other language if needed)
bedgraph python written 18 months ago by DVA • 480 • updated 18 months ago by Alex Reynolds ♦ 27k
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Visualising BedGraph files on UCSC [custom tracks]
genome bedgraph visualisation ucsc written 19 months ago by anu014 • 160 • updated 19 months ago by arup • 720
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Difference between 'bedgraph' and 'bw' files
bedgraph bw written 23 months ago by biotech • 510 • updated 23 months ago by igor ♦ 7.2k
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How to create a bedGraph file for broadPeak peak caller?
bedgraph broadpeak chip-seq peak calling written 3.0 years ago by mrs.hope • 10 • updated 2.1 years ago by 569497735 • 0
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Merge hundreds bedgraph files with unionbedg in one bash line
bedgraph merge xargs bash written 2.2 years ago by Shicheng Guo • 7.3k
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Relationship of bedGraph to wig.
bedgraph wiggle wig chip-seq written 2.4 years ago by ariel.balter • 130 • updated 2.4 years ago by Devon Ryan ♦ 87k
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Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
genome bed coordinates sequencing bedgraph written 2.8 years ago by biohack92 • 130 • updated 2.8 years ago by Alex Reynolds ♦ 27k
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How do I replace a value used in script with a range of values in a file?
bioinformatics awk bedgraph written 2.8 years ago by josephmccarter1 • 60 • updated 2.8 years ago by tomc • 80
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Two UCSC bedgraph tracks next to each other
custom track ucsc bedgraph written 3.4 years ago by kevin.wyatt.mcmahon • 0 • updated 2.8 years ago by Chirag Nepal • 2.1k
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Is there a simple way to get the max coverage of a bedgraph file in python?
python bedgraph written 2.8 years ago by rioualen • 320 • updated 2.8 years ago by Alex Reynolds ♦ 27k
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Sum column until a certain value is reached then print that line
bioinformatics awk bedgraph written 2.9 years ago by josephmccarter1 • 60 • updated 2.9 years ago by John ♦ 12k
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Bed to BedGraph
bioinformatics bed dapars rna-seq bedgraph written 2.9 years ago by abc • 30 • updated 2.9 years ago by dally • 160
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Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 3.0 years ago by Sam • 70 • updated 3.0 years ago by Devon Ryan ♦ 87k
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UCSC BedGraph Issue
bedgraph ucsc kent methylation written 3.6 years ago by mbio.kyle • 300 • updated 3.6 years ago by Maximilian Haeussler • 1.3k
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GEM mappability > wig/bedgraph : how to interprete
interpretation gem wiggle mappbility bedgraph written 3.8 years ago by mehran.karimzade • 140
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Generating a bedgraph from a scored bed file
genome bedtools chip-seq coverage bedgraph written 3.8 years ago by Matt Corley • 40 • updated 3.8 years ago by Alex Reynolds ♦ 27k
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