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variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 17 months ago by m93200 • updated 19 days ago by Biostar ♦♦ 20
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GEO database - how to use their bedgraph files
bedgraph rna-seq written 3 months ago by Suicyte10 • updated 3 months ago by Luis Nassar330
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Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 4.1 years ago by Sam80 • updated 8 months ago by Simply Bioinformatics170
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Generating a bedgraph from a scored bed file
genome bedtools chip-seq coverage bedgraph written 4.9 years ago by Matt Corley40 • updated 11 months ago by Biostar ♦♦ 20
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Seqmonk: Bedgraph as input ? (EPIC methylation array data)
seqmonk bedgraph probe design methylation written 13 months ago by Ankit130 • updated 12 months ago by Charles Warden7.6k
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Transform Bedgraph counts into Gene Counts (DESeq2 input)
bedgraph gene counts counts written 12 months ago by LuisNagano40 • updated 12 months ago by gocougs20
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Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 17 months ago by m93200 • updated 15 months ago by Biostar ♦♦ 20
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BigWig library for Java
bedgraph java bigwig written 5.3 years ago by bow790 • updated 16 months ago by holgerbrandl30
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Output bedGraph from genomeCoverageBed is missing "chr"
bedgraph bigwig genomecoveragebed rna-seq ucsc written 17 months ago by m93200 • updated 17 months ago by RamRS25k
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Stranded RNA-seq data visualization in UCSC
bedgraph visualization rna-seq stranded written 18 months ago by marina.v.yurieva480 • updated 18 months ago by Rob3.7k
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"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 5.2 years ago by akivab2100 • updated 18 months ago by Biostar ♦♦ 20
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How to extrach gene names and peaks from BedGraph or BigWig files
peak bedgraph chip-seq bigwig written 22 months ago by hkarakurt80 • updated 22 months ago by Devon Ryan94k
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plot a bedgraph
bed bedgraph rna-seq plot written 23 months ago by sacha1.9k
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How to merge bedGraph records which are next to each other and have the same score?
bedgraph written 2.5 years ago by James Ashmore2.8k • updated 2.5 years ago by geek_y10k
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Visualising BedGraph files on UCSC [custom tracks]
genome bedgraph visualisation ucsc written 2.7 years ago by anu014170 • updated 2.7 years ago by Arup Ghosh2.1k
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Difference between 'bedgraph' and 'bw' files
bedgraph bw written 3.0 years ago by biotech540 • updated 3.0 years ago by igor9.6k
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How to create a bedGraph file for broadPeak peak caller?
bedgraph broadpeak chip-seq peak calling written 4.1 years ago by mrs.hope10 • updated 3.2 years ago by 5694977350
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Relationship of bedGraph to wig.
bedgraph wiggle wig chip-seq written 3.4 years ago by ariel.balter140 • updated 3.4 years ago by Devon Ryan94k
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