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<prev • 41 results • page 1 of 2 • next >
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Plotting Bedgraph with multiple chromosome
bedgraph sushi R written 8 days ago by jaqx008 • 70
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1
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485
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variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 17 months ago by m93 • 200 • updated 19 days ago by Biostar ♦♦ 20
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5 follow
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GEO database - how to use their bedgraph files
bedgraph rna-seq written 3 months ago by Suicyte • 10 • updated 3 months ago by Luis Nassar • 330
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479
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Obtain ChIPseq peaks from a bedgraph file with continuous regions
peaks calling homer macs2 chip-seq bedgraph written 9 months ago by mmaqueda • 0 • updated 7 months ago by Biostar ♦♦ 20
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Overlapping Bedgraph - Microarray ChIP to BigWig for Clustering analysis
bedgraph chip bigwig microarray heatmap written 8 months ago by Hushus • 20
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Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 4.1 years ago by Sam • 80 • updated 8 months ago by Simply Bioinformatics • 170
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Generating a bedgraph from a scored bed file
genome bedtools chip-seq coverage bedgraph written 4.9 years ago by Matt Corley • 40 • updated 11 months ago by Biostar ♦♦ 20
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Seqmonk: Bedgraph as input ? (EPIC methylation array data)
seqmonk bedgraph probe design methylation written 13 months ago by Ankit • 130 • updated 12 months ago by Charles Warden ♦ 7.6k
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439
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1
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Transform Bedgraph counts into Gene Counts (DESeq2 input)
bedgraph gene counts counts written 12 months ago by LuisNagano • 40 • updated 12 months ago by gocougs • 20
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3
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Visualizing CNV data based from bed or bedgraph format
R igv bedgraph cnv bed written 12 months ago by sm.hashemin • 90
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bedgraph file format in IGV: good for observing CNV ?
bedgraph cnv igv written 14 months ago by Pin.Bioinf • 270
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681
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Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 17 months ago by m93 • 200 • updated 15 months ago by Biostar ♦♦ 20
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1.8k
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3
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BigWig library for Java
bedgraph java bigwig written 5.3 years ago by bow • 790 • updated 16 months ago by holgerbrandl • 30
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Output bedGraph from genomeCoverageBed is missing "chr"
bedgraph bigwig genomecoveragebed rna-seq ucsc written 17 months ago by m93 • 200 • updated 17 months ago by RamRS ♦ 25k
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5 follow
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Stranded RNA-seq data visualization in UCSC
bedgraph visualization rna-seq stranded written 18 months ago by marina.v.yurieva • 480 • updated 18 months ago by Rob ♦ 3.7k
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"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 5.2 years ago by akivab2 • 100 • updated 18 months ago by Biostar ♦♦ 20
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307
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What should you do if you don't know the wig file is based on GRCH37 or GRCH38?
bedgraph wig written 18 months ago by Shicheng Guo • 8.0k
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759
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bedGraph compress tools
bedtools bedgraph written 18 months ago by marina.v.yurieva • 480
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How to extrach gene names and peaks from BedGraph or BigWig files
peak bedgraph chip-seq bigwig written 22 months ago by hkarakurt • 80 • updated 22 months ago by Devon Ryan ♦ 94k
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5 follow
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plot a bedgraph
bed bedgraph rna-seq plot written 23 months ago by sacha • 1.9k
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601
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genome-wide gene occupancy profiles
bedgraph chip-seq occupany profile written 2.5 years ago by Assa Yeroslaviz • 1.3k
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2
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How to merge bedGraph records which are next to each other and have the same score?
bedgraph written 2.5 years ago by James Ashmore • 2.8k • updated 2.5 years ago by geek_y ♦ 10k
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1
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1
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Effectively search for positions in large bedgraph files using python (or other language if needed)
bedgraph python written 2.6 years ago by DVA • 530 • updated 2.6 years ago by Alex Reynolds ♦ 29k
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1
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Visualising BedGraph files on UCSC [custom tracks]
genome bedgraph visualisation ucsc written 2.7 years ago by anu014 • 170 • updated 2.7 years ago by Arup Ghosh ♦ 2.1k
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1
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Difference between 'bedgraph' and 'bw' files
bedgraph bw written 3.0 years ago by biotech • 540 • updated 3.0 years ago by igor ♦ 9.6k
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1
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How to create a bedGraph file for broadPeak peak caller?
bedgraph broadpeak chip-seq peak calling written 4.1 years ago by mrs.hope • 10 • updated 3.2 years ago by 569497735 • 0
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Merge hundreds bedgraph files with unionbedg in one bash line
bedgraph merge xargs bash written 3.3 years ago by Shicheng Guo • 8.0k
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1
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Relationship of bedGraph to wig.
bedgraph wiggle wig chip-seq written 3.4 years ago by ariel.balter • 140 • updated 3.4 years ago by Devon Ryan ♦ 94k
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Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
genome bed coordinates sequencing bedgraph written 3.9 years ago by biohack92 • 150 • updated 3.9 years ago by Alex Reynolds ♦ 29k
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How do I replace a value used in script with a range of values in a file?
bioinformatics awk bedgraph written 3.9 years ago by josephmccarter1 • 70 • updated 3.9 years ago by tomc • 80
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