Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: bedgraph • reset
or   Classic search
<prev • 37 results • page 1 of 2 • next >
0
votes
1
answer
213
views
1
answer
Seqmonk: Bedgraph as input ? (EPIC methylation array data)
seqmonk bedgraph probe design methylation written 11 weeks ago by Ankit • 60 • updated 4 weeks ago by Charles Warden ♦ 6.4k
2
votes
1
answer
129
views
1
answer
Transform Bedgraph counts into Gene Counts (DESeq2 input)
bedgraph gene counts counts written 5 weeks ago by LuisNagano • 10 • updated 5 weeks ago by gocougs • 20
3
votes
3
answers
171
views
3
answers
Visualizing CNV data based from bed or bedgraph format
R igv bedgraph cnv bed written 6 weeks ago by sm.hashemin • 60
1
vote
0
answers
159
views
0
answers
bedgraph file format in IGV: good for observing CNV ?
bedgraph cnv igv written 3 months ago by Pin.Bioinf • 240
1
vote
0
answers
257
views
0
answers
Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 6 months ago by m93 • 140 • updated 4 months ago by Biostar ♦♦ 20
7
votes
3
answers
1.6k
views
3
answers
BigWig library for Java
bedgraph java bigwig written 4.4 years ago by bow • 780 • updated 4 months ago by holgerbrandl • 30
3
votes
1
answer
240
views
1
answer
variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 6 months ago by m93 • 140 • updated 6 months ago by RamRS ♦ 20k
3
votes
1
answer
402
views
1
answer
Output bedGraph from genomeCoverageBed is missing "chr"
bedgraph bigwig genomecoveragebed rna-seq ucsc written 6 months ago by m93 • 140 • updated 6 months ago by RamRS ♦ 20k
7
votes
1
answer
449
views
5 follow
1
answer
Stranded RNA-seq data visualization in UCSC
bedgraph visualization rna-seq stranded written 7 months ago by marina.v.yurieva • 480 • updated 7 months ago by Rob ♦ 3.2k
0
votes
0
answers
870
views
0
answers
"olambda_treat_afterfiting_all" output file from MACS
macs bedgraph output written 4.3 years ago by akivab2 • 90 • updated 7 months ago by Biostar ♦♦ 20
0
votes
0
answers
167
views
0
answers
What should you do if you don't know the wig file is based on GRCH37 or GRCH38?
bedgraph wig written 7 months ago by Shicheng Guo • 7.4k
1
vote
0
answers
362
views
0
answers
bedGraph compress tools
bedtools bedgraph written 7 months ago by marina.v.yurieva • 480
1
vote
1
answer
561
views
1
answer
How to extrach gene names and peaks from BedGraph or BigWig files
peak bedgraph chip-seq bigwig written 10 months ago by hkarakurt • 40 • updated 10 months ago by Devon Ryan ♦ 88k
5
votes
2
answers
1.3k
views
5 follow
2
answers
plot a bedgraph
bed bedgraph rna-seq plot written 11 months ago by sacha • 1.7k
0
votes
0
answers
429
views
0
answers
genome-wide gene occupancy profiles
bedgraph chip-seq occupany profile written 18 months ago by Assa Yeroslaviz • 1.2k
5
votes
2
answers
827
views
2
answers
How to merge bedGraph records which are next to each other and have the same score?
bedgraph written 19 months ago by James Ashmore • 2.6k • updated 19 months ago by geek_y ♦ 9.3k
2
votes
1
answer
697
views
1
answer
Effectively search for positions in large bedgraph files using python (or other language if needed)
bedgraph python written 20 months ago by DVA • 500 • updated 20 months ago by Alex Reynolds ♦ 27k
4
votes
1
answer
1.0k
views
1
answer
Visualising BedGraph files on UCSC [custom tracks]
genome bedgraph visualisation ucsc written 21 months ago by anu014 • 160 • updated 21 months ago by arup • 870
1
vote
1
answer
2.4k
views
1
answer
Difference between 'bedgraph' and 'bw' files
bedgraph bw written 2.1 years ago by biotech • 510 • updated 2.1 years ago by igor ♦ 7.4k
0
votes
1
answer
1.7k
views
1
answer
How to create a bedGraph file for broadPeak peak caller?
bedgraph broadpeak chip-seq peak calling written 3.1 years ago by mrs.hope • 10 • updated 2.3 years ago by 569497735 • 0
0
votes
0
answers
987
views
0
answers
Merge hundreds bedgraph files with unionbedg in one bash line
bedgraph merge xargs bash written 2.3 years ago by Shicheng Guo • 7.4k
0
votes
1
answer
1.4k
views
1
answer
Relationship of bedGraph to wig.
bedgraph wiggle wig chip-seq written 2.5 years ago by ariel.balter • 140 • updated 2.5 years ago by Devon Ryan ♦ 88k
1
vote
1
answer
872
views
1
answer
Is there any way to determine whether my sequenced data uses 0- or 1-based coordinates?
genome bed coordinates sequencing bedgraph written 2.9 years ago by biohack92 • 150 • updated 2.9 years ago by Alex Reynolds ♦ 27k
3
votes
1
answer
1.1k
views
1
answer
How do I replace a value used in script with a range of values in a file?
bioinformatics awk bedgraph written 2.9 years ago by josephmccarter1 • 60 • updated 2.9 years ago by tomc • 80
0
votes
1
answer
940
views
1
answer
Two UCSC bedgraph tracks next to each other
custom track ucsc bedgraph written 3.6 years ago by kevin.wyatt.mcmahon • 0 • updated 3.0 years ago by Chirag Nepal • 2.2k
1
vote
2
answers
866
views
2
answers
Is there a simple way to get the max coverage of a bedgraph file in python?
python bedgraph written 3.0 years ago by rioualen • 330 • updated 3.0 years ago by Alex Reynolds ♦ 27k
13
votes
3
answers
2.1k
views
3
answers
Sum column until a certain value is reached then print that line
bioinformatics awk bedgraph written 3.0 years ago by josephmccarter1 • 60 • updated 3.0 years ago by John ♦ 12k
6
votes
1
answer
6.4k
views
1
answer
Bed to BedGraph
bioinformatics bed dapars rna-seq bedgraph written 3.1 years ago by abc • 30 • updated 3.1 years ago by dally • 170
0
votes
1
answer
2.6k
views
1
answer
Overlapping regions in a BedGraph file
gro-seq bedgraph chip-seq deeptools written 3.2 years ago by Sam • 70 • updated 3.2 years ago by Devon Ryan ♦ 88k
6
votes
1
answer
1.9k
views
1
answer
UCSC BedGraph Issue
bedgraph ucsc kent methylation written 3.7 years ago by mbio.kyle • 300 • updated 3.7 years ago by Maximilian Haeussler • 1.3k
<prev • 37 results • page 1 of 2 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, 1 minute ago
  • China/Beijing, 2 minutes ago
  • United States, 3 minutes ago
  • United States, 7 minutes ago
  • Germany, 9 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1234 users visited in the last hour