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Bedtools merge messing chromosome start - end points

bedtools merge bedtools merge genome written 3 months ago by nitinra • 10 • updated 3 months ago by Jorge Amigo ♦ 12k

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Recent Replies

C: trimming of fasta file by Pierre Lindenbaum ♦ 133k
https://thomas-cokelaer.info/blog/2011/05/awk-the-substr-command-to-select-a-substring/
C: trimming of fasta file by harry • 10
Can you please tell me how is it I doing this because I want a 150 bp sequence from the middle? ...
C: RNA-Seq, HTSeq-Counts, counts are ~1M less compared to the reference research pa by GenoMax ♦ 94k
Most NGS aligners are non-deterministic i.e. you may not get exactly identical alignments if you ...
C: Why did I get very poor scRNAseq files through STARSolo, Galaxy. by GenoMax ♦ 94k
That may have been one of the problems. Are you simply following the tutorial i.e. not using your...
C: trimming of fasta file by Pierre Lindenbaum ♦ 133k
> God kills a kitten every time you use a gui.
C: trimming of fasta file by Pierre Lindenbaum ♦ 133k
> . in this question I want to isolate the sequence from the middle part which overhangs from ...
C: Why did I get very poor scRNAseq files through STARSolo, Galaxy. by Youyy • 0
Thank you. I am not sure how to extract the code from Galaxy. Last time I didn't pair the R1 and ...
C: Why did I get very poor scRNAseq files through STARSolo, Galaxy. by Youyy • 0
I didn't pair my R1 and R2 files, I uploaded them separately, I am not sure if this is a case. I ...
C: Merging bowtie output by ATpoint ♦ 44k
Hello, I am not quite sure I understand. So you want to remove reads of mt origin from this paire...
C: How to avoid building millions of BWA indices? by GenoMax ♦ 94k
If the episome references are non-overlapping then I don't think you can `merge` the BAM files si...
C: Pairwise2 Alignment Gap Penalties by trinityduke100 • 0
Yes but is this for substitutions(mismatch) errors? I have a particular sequence that is passed...
C: RNA-Seq, HTSeq-Counts, counts are ~1M less compared to the reference research pa by xytwwwww • 0
Thank you for your reply! Also, ~1M loss in ~20M sounds very minor to me, would you agree on this?

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