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<prev • 594 results • page 1 of 20 • next >
1
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BED intersects/overlaps output for Venn diagrams - single column
bedtools bedops written 3.4 years ago by rbronste • 360 • updated 1 day ago by esimonova.me • 0
1
vote
1
answer
53
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1
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Bedtools to make a bed file for promoter
bedtools written 3 days ago by pixie@bioinfo • 1.4k • updated 3 days ago by seidel ♦ 7.1k
1
vote
1
answer
107
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1
answer
Generate BED12 file from genomic coordinates
bedtools bed12 ucsc written 7 days ago by Barry Digby • 470
2
votes
2
answers
2.0k
views
2
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problem with bedtools complement: how to extract strand information?
bedtools written 6.0 years ago by biolab • 1.2k • updated 13 days ago by deepali.kundnani • 0
0
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1
answer
93
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1
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Does bedtools intersect output overlaps with isoforms?
bedtools isoforms written 21 days ago by kmkdesilva • 90 • updated 18 days ago by Kevin Blighe ♦ 66k
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1
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77
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1
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Extract non-repetitive DNA sequence
bedtools written 21 days ago by huiyus97 • 0 • updated 20 days ago by JC ♦ 11k
3
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3
answers
136
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5 follow
3
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bedtools sort doesn't properly sort
bedtools written 4 weeks ago by vctrm67 • 20 • updated 21 days ago by Jorge Amigo ♦ 12k
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2
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93
views
2
answers
Bedtools merge messing chromosome start - end points
genome bedtools merge merge bedtools written 26 days ago by nitinra • 0 • updated 21 days ago by Jorge Amigo ♦ 12k
8
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1
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4.7k
views
1
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Bedtools Intersectbed
bedtools intersect coverage written 8.9 years ago by Ian ♦ 5.7k • updated 25 days ago by Biostar ♦♦ 20
3
votes
1
answer
104
views
1
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Plotting large file size of bedtools genomecov output
bedtools genomecov genome coverage depth written 27 days ago by nitinra • 0 • updated 27 days ago by Pierre Lindenbaum ♦ 131k
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0
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91
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0
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bedtools closest default?
bedtools written 4 weeks ago by vctrm67 • 20
1
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1
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163
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1
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Bedtools - can I operate two operations same time, and on the same database?
bedtools written 5 weeks ago by Waly • 0 • updated 5 weeks ago by Alex Reynolds ♦ 30k
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0
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140
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0
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How can I add sequences to my BED file?
bedtools bed written 7 weeks ago by saygingulec • 0
0
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2
answers
158
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2
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Comparing peaks between multiple samples
bedtools chip-seq written 8 weeks ago by emilyprice16 • 0 • updated 7 weeks ago by Rory Stark • 790
0
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0
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202
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0
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About calculating the GC content in a sliding window
bedtools gccontent written 8 weeks ago by jon.brate • 250
2
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2
answers
153
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2
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Extract exact match from bed files
bedtools bed bedops written 8 weeks ago by brown.annaleigh • 10 • updated 8 weeks ago by Alex Reynolds ♦ 30k
1
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0
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134
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0
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How to get similar naming protein seqs and gff from downloaded genome files
genome bedtools gff unix written 9 weeks ago by T_18 • 40
3
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0
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210
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0
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Tutorial: Real World BEDtools. Practical Examples for Variant Filtering and Gene Annotations
bedtools bed tutorial lesson video written 10 weeks ago by sdsubaru33 • 30
0
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0
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196
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0
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To remove variants that encode for PE-PPE proteins from .vcf file
bedtools annovar vcftools written 11 weeks ago by kumari.indu31 • 0
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2
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1.9k
views
2
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Filtering reads aligned to specific chromosome
bamtofastq bedtools bam sam snp written 4.6 years ago by signauncreal • 0 • updated 11 weeks ago by Biostar ♦♦ 20
0
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0
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194
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0
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intersection of two GFFs
bedtools gff intersect written 4 months ago by BioDH • 0 • updated 3 months ago by Biostar ♦♦ 20
1
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0
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103
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0
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Intersecting unbalanced BED files, normalizing for one
bedtools bedops written 3 months ago by LacquerHed • 0
0
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0
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120
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0
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Understanding BEDtools summary output
bedtools bed summary man written 3 months ago by brismiller • 40
0
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0
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131
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0
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find co-ordinates of overlapping fasta sequences
bedtools fasta micrornas written 3 months ago by sg197 • 20
0
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0
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127
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0
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Creating a bed file from a de novo fasta file
bedtools assembly metagenomics written 3 months ago by c.e.chong • 20
0
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0
answers
144
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0
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Question about the parameter -fs in bedtools.
bedtools written 4 months ago by Spencer • 20
0
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2
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1.4k
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2
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bedtools closest - result for only the first query
bedtools software error closest bed written 2.6 years ago by yjyj • 0 • updated 4 months ago by Biostar ♦♦ 20
0
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1
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522
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1
answer
Bedtools intersect with header file
bedtools written 10 months ago by irfanwustl • 10 • updated 4 months ago by Alex Reynolds ♦ 30k
4
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3
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255
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3
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Bedtools intersect not reporting all overlaps
bedtools bedtools intersect gff artemis bed written 4 months ago by jamie.pike • 50
1
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1
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158
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1
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compute genome coverage from specific bam contig
bedtools samtools written 4 months ago by regue.hadrien • 30
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