Showing: bedtoolsreset
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how to add bed files together
bedtools bed written 6 days ago by dimitrischat0 • updated 5 days ago by Alex Reynolds17k
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Intersecting vcf files with bedtools
bedtools vcf intersectbed written 6 days ago by Maj0 • updated 6 days ago by genomax223k
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Bedtools - Intervals frequency occurence in multiple files
bedtools written 28 days ago by mujupas40 • updated 28 days ago by Alex Reynolds17k
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Merge/Collapse regions within a certain distance
bedtools written 6 weeks ago by Adrian Pelin1.9k • updated 6 weeks ago by Pierre Lindenbaum89k
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genomeCoverageBed : for fixed size bins
bedtools written 6 weeks ago by Varun Gupta820 • updated 6 weeks ago by apa@stowers320
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how to adjust size of intervals in bed12 format?
bedtools bed alignment written 7 weeks ago by murathong60 • updated 7 weeks ago by Carlo Yague2.2k
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intersectBed - multiple intersections
bedtools intersectbed written 8 weeks ago by mbk0asis170 • updated 8 weeks ago by sysbiocoder150
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bedtools multicov not running
bedtools gene expression multicov rna-seq written 11 months ago by Bnf8370 • updated 9 weeks ago by ariel.balter10
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Trouble with bedtools groupby - not summarizing by columns
bedtools groupby bam sort written 10 weeks ago by yarmda0 • updated 10 weeks ago by dariober7.3k
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coverage on exons with bedtools genomecov
bedtools exons rna-seq coverage written 10 weeks ago by guillaume.rbt100 • updated 10 weeks ago by Jeffin Rockey240
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Differentiate "no coverage regions" in bedtools
bedtools ngs coverage split written 10 weeks ago by BioGeek30 • updated 10 weeks ago by Charles Plessy1.3k
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intersection of two files
bedtools written 11 weeks ago by a.rex40 • updated 11 weeks ago by Alex Reynolds17k
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How analyse chip-exo paired read data and get BigWig or Peaks called?
bedtools bed written 3 months ago by morovatunc290 • updated 12 weeks ago by genecats.ucsc90
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Tutorial: Introduction to bedtools.
bedtools tutorial written 2.3 years ago by Aaronquinlan9.6k • updated 12 weeks ago by mcc70
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Converting large (compressed and unsorted) BAM files to fastq
bedtools picard fatsq alignment bam written 3 months ago by alesssia430 • updated 3 months ago by Brian Bushnell9.8k
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tab-delimited file - use in bedtools?
bedtools tab-delimited file bedfile written 3 months ago by a.rex40 • updated 3 months ago by michael.ante1.5k
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getfasta command requires a bedfile template of some sort
bedtools getfasta written 3 months ago by chrisclarkson10030 • updated 3 months ago by harold.smith.tarheel3.5k
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Finding downstream Gene Closest To A Given Location
bedtools gene bedfile closest written 3 months ago by PAn10 • updated 3 months ago by harold.smith.tarheel3.5k
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generating midpoints on a bedfile
bedtools bedfile midpoint written 4 months ago by a.rex40 • updated 4 months ago by WouterDeCoster13k
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Counting read orientation between ranges in a bed file
bedtools bed bedops written 4 months ago by EVR400 • updated 4 months ago by Goutham Atla6.9k
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