Showing: bedtoolsreset
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bedtools error: could not find indexes
bedtools rna-seq written 11 months ago by Katie D0 • updated 9 days ago by Biostar ♦♦ 20
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Creating reproducible peak regions from multiple ChIP-seq studies
bedtools bedops written 10 weeks ago by James Ashmore2.0k • updated 14 days ago by Biostar ♦♦ 20
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Problems getting read number per gene after sequencing
htseq bedtools multicov written 20 days ago by ThePresident50 • updated 20 days ago by geek_y7.8k
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How to extend bed intervals to a uniform size?
bedtools bed genome written 23 days ago by bsb43900 • updated 22 days ago by Maciej Jończyk590
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bedtools closest gives a -1 distance with -io (ignore overlaps)
bedtools closest written 4 weeks ago by ildem10 • updated 23 days ago by Biostar ♦♦ 20
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understanding bedtools coverage output
bedtools rna-seq written 5 weeks ago by vinayjrao60 • updated 5 weeks ago by t_stranger20
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Clustering and Bedtools
bedtools bedfile clustering written 5 weeks ago by user_g0 • updated 5 weeks ago by Carlo Yague3.1k
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Closest gene to set of intervals
bedtools bedops written 7 weeks ago by rbronste140 • updated 7 weeks ago by Rohit1.2k
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Merge bed files, keep the peak count
bedtools bedops chip-seq written 14 months ago by rioualen170 • updated 9 weeks ago by Biostar ♦♦ 20
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getfasta won't read my database
bedtools ncbi database getfasta written 9 weeks ago by Justin.kallman0 • updated 9 weeks ago by WouterDeCoster20k
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Intersect multiple VCF files
vcf bedtools intersect vcftools snp written 11 weeks ago by ciemanek20 • updated 9 weeks ago by Brian Bushnell13k
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overlap BED files, but account for region name
overlap bed bedtools written 9 weeks ago by igor4.4k • updated 9 weeks ago by Chris Miller18k
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BED intersects/overlaps output for Venn diagrams - single column
bedtools bedops written 10 weeks ago by rbronste140 • updated 10 weeks ago by Alex Reynolds20k
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how to calculate coverage in bam file over a specific bed file
bedtools multicov coverage exon rna-seq written 11 weeks ago by Lila M 330 • updated 11 weeks ago by Devon Ryan70k
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randomly shuffle BAM file
bedtools bam shuffle written 2.1 years ago by mparker220 • updated 3 months ago by skanterakis50
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