Showing: bedtoolsreset
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randomly shuffle BAM file
bedtools bam shuffle written 22 months ago by mparker220 • updated 15 days ago by skanterakis50
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Trouble with bedtools groupby - not summarizing by columns
bedtools groupby bam sort written 5 months ago by yarmda0 • updated 22 days ago by Eijy0
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Output bed file region sizes as histogram
bedtools bed bedops histogram written 4 weeks ago by mmmmcandrew60 • updated 4 weeks ago by Alex Reynolds19k
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compute coverage with file.bam and bed : bedtools empty output
bedtools bed bam coverage written 7 weeks ago by noeD50 • updated 7 weeks ago by Devon Ryan66k
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prepare pair-ended reads for peak calling
bedtools chip-seq pair-ended written 8 weeks ago by Marius0 • updated 8 weeks ago by Alexander Toenges500
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How to extend variable length intervals to the same final length?
bedtools footprint intervals slop written 11 weeks ago by Ian4.8k • updated 11 weeks ago by Alex Reynolds19k
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bedtools shuffle vs. random
bedtools written 11 weeks ago by blur40 • updated 11 weeks ago by bernatgel220
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bedtools intersect for file with different number of columns
bedtools written 12 weeks ago by aishwaryamandava710 • updated 12 weeks ago by Alex Reynolds19k
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Intersecting vcf files with bedtools
bedtools vcf intersectbed written 3 months ago by Maj0 • updated 12 weeks ago by harold.smith.tarheel3.5k
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Merging a bed file with regions delimited by reads
genome bedtools snp mergebed written 12 weeks ago by Jon B0 • updated 12 weeks ago by Alex Reynolds19k
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how to add bed files together
bedtools bed written 3 months ago by dimitrischat10 • updated 3 months ago by Alex Reynolds19k
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Bedtools - Intervals frequency occurence in multiple files
bedtools written 3 months ago by mujupas40 • updated 3 months ago by Alex Reynolds19k
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Merge/Collapse regions within a certain distance
bedtools written 4 months ago by Adrian Pelin2.0k • updated 4 months ago by Pierre Lindenbaum94k
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genomeCoverageBed : for fixed size bins
bedtools written 4 months ago by Varun Gupta850 • updated 4 months ago by apa@stowers320
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multiIntersectBed for SNPs, need to compare but not merge intervals
bedtools intersect snp written 4 months ago by Adrian Pelin2.0k • updated 4 months ago by Alex Reynolds19k
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