Showing: bedtoolsreset
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54
votes
10
answers
7.1k
views
9 follow
10
answers
Tool: Bedtools: Analyzing Genomic Features
bedtools tool written 6.8 years ago by Istvan Albert ♦♦ 79k • updated 4.1 years ago by Aaronquinlan10k
109
votes
10
answers
48k
views
75 follow
10
answers
Tutorial: Piping With Samtools, Bwa And Bedtools
bedtools tutorial samtools unix bwa written 6.8 years ago by Ying W3.9k • updated 3.3 years ago by Yaseen Ladak20
9
votes
7
answers
3.7k
views
6 follow
7
answers
randomly shuffle BAM file
bedtools bam shuffle written 3.6 years ago by mparker220 • updated 21 months ago by skanterakis100
6
votes
6
answers
14k
views
8 follow
6
answers
How Can I Compare And Merge Bed Files
bedtools bed written 6.6 years ago by lyfsa30 • updated 5.8 years ago by beary.pooh10
34
votes
6
answers
10.0k
views
14 follow
6
answers
Annotating Genomic Intervals
bedtools annotation bioconductor R written 6.4 years ago by Stephen2.7k • updated 6.4 years ago by Alex Reynolds27k
15
votes
6
answers
5.5k
views
13 follow
6
answers
17
votes
5
answers
12k
views
13 follow
5
answers
Discrepancy In Samtools Mpileup/Depth And Bedtools Genomecoveragebed Counts
bedtools samtools written 5.9 years ago by Surya Saha250 • updated 5.3 years ago by plafdesigns30
17
votes
5
answers
7.1k
views
10 follow
5
answers
2
votes
5
answers
382
views
6 follow
5
answers
Expanding Genomic Coordinates Using Bedtools
bedtools bed tools genomc bed file written 8 months ago by gtasource20 • updated 7 months ago by Aaronquinlan10k
6
votes
5
answers
434
views
5 follow
5
answers
7
votes
5
answers
200
views
5 follow
5
answers
Pulling out interval adjoining regions
bedtools bed bedops interval written 12 weeks ago by rbronste230 • updated 11 weeks ago by Alex Reynolds27k
31
votes
4
answers
13k
views
15 follow
4
answers
Getting Unmapped Reads: Comparing Fastq To Bam
bedtools fastq bam samtools written 7.2 years ago by User 9996800 • updated 7.2 years ago by brentp22k
3
votes
4
answers
8.9k
views
5 follow
4
answers
Genomecoveragebed - Bedtool For Reporting Per Base Genome Coverage
bedtools coverage written 7.0 years ago by Varun Gupta1.1k • updated 5.1 years ago by hygine5550
4
votes
4
answers
3.2k
views
6 follow
4
answers
Extract Only Paired-End Reads That Map A Specific Interval
bedtools extraction written 6.5 years ago by Nicolas Rosewick7.3k • updated 4 months ago by pnatsidis0
5
votes
4
answers
4.4k
views
5 follow
4
answers
N Closest Genes To A Given Location
bedtools intersect written 6.4 years ago by dfernan640 • updated 6.4 years ago by Alex Reynolds27k
30
votes
4
answers
23k
views
16 follow
4
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 6.0 years ago by user790 • updated 7 months ago by ATpoint13k
19
votes
4
answers
19k
views
12 follow
4
answers
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools written 5.8 years ago by komal.rathi3.4k • updated 4 months ago by Medhat8.1k
5
votes
4
answers
1.8k
views
5 follow
4
answers
1
vote
4
answers
4.1k
views
5 follow
4
answers
13
votes
4
answers
5.0k
views
5 follow
4
answers
Calculating GC content from BAM file by BED file
cg content bed bam bedtools written 4.2 years ago by Paul1.3k • updated 4.2 years ago by Aaronquinlan10k
3
votes
4
answers
3.9k
views
4
answers
Intersect multiple bed and keep all fields
bedtools bed bedops written 3.5 years ago by user230613270 • updated 16 months ago by ashmc0
1
vote
4
answers
746
views
4
answers
Generate bed co-ordinates other then given input bed file
bedfile bedtools written 2.8 years ago by Chirag Parsania1.3k • updated 2.7 years ago by A. Domingues1.8k
0
votes
4
answers
1.0k
views
4
answers
condition bedtools on name column
bedtools written 2.5 years ago by burnsro20 • updated 2.5 years ago by Alex Reynolds27k
5
votes
4
answers
672
views
4
answers
7
votes
3
answers
6.9k
views
5 follow
3
answers
Convert .Txt Into Bed Files
bedtools comparison written 7.6 years ago by Bioscientist1.6k • updated 7.6 years ago by Swbarnes21.4k
76
votes
3
answers
42k
views
29 follow
3
answers
Bedtools Compare Multiple Bed Files?
bedtools intersect written 7.3 years ago by Bioscientist1.6k • updated 6.1 years ago by sjneph600
7
votes
3
answers
5.1k
views
5 follow
3
answers
11
votes
3
answers
6.4k
views
5 follow
3
answers
Multi Thread Bedtools
bedtools parallel written 7.2 years ago by Nicolas Rosewick7.3k • updated 4.6 years ago by Biostar ♦♦ 20
28
votes
3
answers
5.7k
views
7 follow
3
answers
18
votes
3
answers
3.2k
views
6 follow
3
answers
How To Find The Nearest Gene To A Retrotransposon Insert?
bedtools bed position mouse written 6.9 years ago by Joseph Hughes2.7k • updated 6.9 years ago by Alex Reynolds27k
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