Showing: bedtoolsreset
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54
votes
10
answers
7.3k
views
9 follow
10
answers
Tool: Bedtools: Analyzing Genomic Features
bedtools tool written 7.1 years ago by Istvan Albert ♦♦ 80k • updated 4.5 years ago by Aaronquinlan11k
110
votes
10
answers
50k
views
75 follow
10
answers
Tutorial: Piping With Samtools, Bwa And Bedtools
bedtools tutorial samtools unix bwa written 7.1 years ago by Ying W3.9k • updated 3.6 years ago by Yaseen Ladak20
9
votes
7
answers
4.0k
views
6 follow
7
answers
randomly shuffle BAM file
bedtools bam shuffle written 3.9 years ago by mparker220 • updated 2.1 years ago by skanterakis100
7
votes
6
answers
15k
views
8 follow
6
answers
How Can I Compare And Merge Bed Files
bedtools bed written 6.9 years ago by lyfsa30 • updated 6.1 years ago by beary.pooh10
34
votes
6
answers
10k
views
15 follow
6
answers
Annotating Genomic Intervals
bedtools annotation bioconductor R written 6.7 years ago by Stephen2.7k • updated 6.7 years ago by Alex Reynolds28k
17
votes
5
answers
13k
views
13 follow
5
answers
Discrepancy In Samtools Mpileup/Depth And Bedtools Genomecoveragebed Counts
bedtools samtools written 6.2 years ago by Surya Saha260 • updated 5.6 years ago by plafdesigns30
17
votes
5
answers
7.4k
views
10 follow
5
answers
2
votes
5
answers
478
views
6 follow
5
answers
Expanding Genomic Coordinates Using Bedtools
bedtools bed tools genomc bed file written 12 months ago by gtasource20 • updated 11 months ago by Aaronquinlan11k
6
votes
5
answers
532
views
5 follow
5
answers
7
votes
5
answers
256
views
5 follow
5
answers
Pulling out interval adjoining regions
bedtools bed bedops interval written 6 months ago by rbronste240 • updated 6 months ago by Alex Reynolds28k
31
votes
4
answers
13k
views
15 follow
4
answers
Getting Unmapped Reads: Comparing Fastq To Bam
bedtools fastq bam samtools written 7.5 years ago by User 9996800 • updated 7.5 years ago by brentp23k
3
votes
4
answers
9.1k
views
5 follow
4
answers
Genomecoveragebed - Bedtool For Reporting Per Base Genome Coverage
bedtools coverage written 7.3 years ago by Varun Gupta1.1k • updated 5.4 years ago by hygine5550
4
votes
4
answers
3.4k
views
6 follow
4
answers
Extract Only Paired-End Reads That Map A Specific Interval
bedtools extraction written 6.8 years ago by Nicolas Rosewick7.7k • updated 8 months ago by pnatsidis0
5
votes
4
answers
4.6k
views
5 follow
4
answers
N Closest Genes To A Given Location
bedtools intersect written 6.7 years ago by dfernan650 • updated 6.7 years ago by Alex Reynolds28k
20
votes
4
answers
7.9k
views
10 follow
4
answers
How To Extract Scores From Bedgraph File Using Bed Tools
bedtools written 6.4 years ago by biorepine1.4k • updated 3 months ago by brianpenghe20
30
votes
4
answers
24k
views
16 follow
4
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 6.3 years ago by user790 • updated 11 months ago by ATpoint17k
25
votes
4
answers
21k
views
15 follow
4
answers
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools written 6.1 years ago by komal.rathi3.4k • updated 8 months ago by Medhat8.3k
5
votes
4
answers
1.9k
views
5 follow
4
answers
1
vote
4
answers
4.3k
views
5 follow
4
answers
13
votes
4
answers
5.3k
views
5 follow
4
answers
Calculating GC content from BAM file by BED file
cg content bed bam bedtools written 4.5 years ago by Paul1.3k • updated 4.5 years ago by Aaronquinlan11k
3
votes
4
answers
4.2k
views
4
answers
Intersect multiple bed and keep all fields
bedtools bed bedops written 3.9 years ago by user230613280 • updated 19 months ago by ashmc0
1
vote
4
answers
787
views
4
answers
Generate bed co-ordinates other then given input bed file
bedfile bedtools written 3.1 years ago by Chirag Parsania1.4k • updated 3.1 years ago by A. Domingues2.1k
0
votes
4
answers
1.2k
views
4
answers
condition bedtools on name column
bedtools written 2.9 years ago by burnsro20 • updated 2.9 years ago by Alex Reynolds28k
15
votes
4
answers
6.2k
views
14 follow
4
answers
6
votes
4
answers
1.1k
views
4
answers
7
votes
3
answers
7.1k
views
5 follow
3
answers
Convert .Txt Into Bed Files
bedtools comparison written 7.9 years ago by Bioscientist1.7k • updated 7.9 years ago by Swbarnes21.5k
81
votes
3
answers
44k
views
31 follow
3
answers
Bedtools Compare Multiple Bed Files?
bedtools intersect written 7.6 years ago by Bioscientist1.7k • updated 6.4 years ago by sjneph600
7
votes
3
answers
5.4k
views
5 follow
3
answers
11
votes
3
answers
7.0k
views
5 follow
3
answers
Multi Thread Bedtools
bedtools parallel written 7.5 years ago by Nicolas Rosewick7.7k • updated 4.9 years ago by Biostar ♦♦ 20
28
votes
3
answers
5.8k
views
7 follow
3
answers
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