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119
votes
8
answers
59k
views
80 follow
8
answers
Tutorial: Piping With Samtools, Bwa And Bedtools
bedtools tutorial samtools unix bwa written 8.9 years ago by Ying W4.0k • updated 5.3 years ago by Yaseen Ladak30
54
votes
10
answers
8.0k
views
9 follow
10
answers
Tool: Bedtools: Analyzing Genomic Features
bedtools tool written 8.9 years ago by Istvan Albert ♦♦ 86k • updated 6.2 years ago by Aaronquinlan11k
90
votes
3
answers
55k
views
35 follow
3
answers
Bedtools Compare Multiple Bed Files?
bedtools intersect written 9.4 years ago by Bioscientist1.7k • updated 8.1 years ago by sjneph620
18
votes
3
answers
11k
views
13 follow
3
answers
Heatmap Of Read Coverage Around Tsss
bedtools coverage heatmap written 7.5 years ago by A. Domingues2.4k • updated 7.5 years ago by Ying W4.0k
32
votes
3
answers
9.2k
views
13 follow
3
answers
Picking Random Genomic Positions
perl bedtools bash written 8.7 years ago by PoGibas4.9k
32
votes
4
answers
14k
views
17 follow
4
answers
Getting Unmapped Reads: Comparing Fastq To Bam
bedtools fastq bam samtools written 9.2 years ago by User 9996810 • updated 9.2 years ago by brentp23k
36
votes
6
answers
12k
views
19 follow
6
answers
Annotating Genomic Intervals
bedtools annotation bioconductor R written 8.4 years ago by Stephen2.8k • updated 8.4 years ago by Alex Reynolds31k
32
votes
6
answers
27k
views
19 follow
6
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 8.0 years ago by user870 • updated 18 months ago by ATpoint46k
18
votes
5
answers
14k
views
14 follow
5
answers
Discrepancy In Samtools Mpileup/Depth And Bedtools Genomecoveragebed Counts
bedtools samtools written 7.9 years ago by Surya Saha260 • updated 7.3 years ago by plafdesigns40
23
votes
2
answers
8.3k
views
16 follow
2
answers
14
votes
1
answer
2.2k
views
8 follow
1
answer
Tutorial: Introduction to bedtools.
bedtools tutorial written 6.3 years ago by Aaronquinlan11k • updated 4.3 years ago by mcc80
11
votes
0
answers
5.8k
views
0
answers
Tutorial: Plot average methylation levels across TSS region
bedtools R tutorial methylation rrbs written 6.1 years ago by TriS4.3k • updated 6.1 years ago by Gjain5.6k
25
votes
2
answers
29k
views
11 follow
2
answers
Converting Gff To Bed With Bedtools?
bedtools bed gff conversion written 8.1 years ago by user870 • updated 8.1 years ago by Alex Reynolds31k
9
votes
2
answers
7.4k
views
8 follow
2
answers
12
votes
1
answer
4.1k
views
1
answer
How to find intron co-ordinates from the gff file?
bedtools gff open intron written 5.3 years ago by Chirag Parsania1.9k • updated 5.3 years ago by Devon Ryan98k
27
votes
1
answer
24k
views
6 follow
1
answer
How To Use Bedtools To Extract Promoters From A Mouse Bed File
bedtools bed extraction promoter fasta written 9.1 years ago by Anima Mundi2.8k • updated 9.1 years ago by Aaronquinlan11k
15
votes
1
answer
3.8k
views
1
answer
20
votes
3
answers
3.8k
views
7 follow
3
answers
How To Find The Nearest Gene To A Retrotransposon Insert?
bedtools bed position mouse written 8.9 years ago by Joseph Hughes2.9k • updated 8.9 years ago by Alex Reynolds31k
3
votes
1
answer
6.0k
views
1
answer
Intersectbed/Coveragebed -Split Purify Exon?
bedtools intersect coverage written 8.5 years ago by Puriney330 • updated 8.5 years ago by johannes.helmuth110
20
votes
4
answers
9.8k
views
10 follow
4
answers
How To Extract Scores From Bedgraph File Using Bed Tools
bedtools written 8.1 years ago by biorepine1.5k • updated 2.0 years ago by brianpenghe50
32
votes
5
answers
27k
views
17 follow
5
answers
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools written 7.8 years ago by komal.rathi3.7k • updated 16 months ago by Phoenix Mu40
9
votes
3
answers
3.8k
views
5 follow
3
answers
Memory Efficient Bedtools Sort And Merge With Millions Of Entries?
bedtools bed written 7.8 years ago by 141341254653464453.5k • updated 7.0 years ago by Biostar ♦♦ 20
1
vote
1
answer
3.2k
views
5 follow
1
answer
Creating Bed File For Lncrna Using Gencode Gtf File
bedtools bed written 7.8 years ago by J.F.Jiang860 • updated 7.8 years ago by biorepine1.5k
17
votes
5
answers
8.6k
views
10 follow
5
answers
5
votes
4
answers
2.2k
views
5 follow
4
answers
5
votes
1
answer
3.0k
views
5 follow
1
answer
Genomic Regions To Exclude Before Shuffling Intervals
bedtools written 7.3 years ago by PoGibas4.9k • updated 4.4 years ago by Biostar ♦♦ 20
15
votes
3
answers
3.9k
views
6 follow
3
answers
11
votes
3
answers
5.4k
views
6 follow
3
answers
Filter a bam file
bedtools bed sequence samtools bam written 6.3 years ago by slanciano30 • updated 6.3 years ago by Jorge Amigo12k
5
votes
1
answer
4.4k
views
1
answer
use bedtools to find overlaps of bed and gff files
bedtools gff written 6.1 years ago by biolab1.2k • updated 6.1 years ago by Vishaka Datta100
22
votes
1
answer
5.1k
views
1
answer
calling bedtools from R
bedtools R written 5.9 years ago by yasjas70 • updated 5.9 years ago by Irsan7.3k
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