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118
votes
8
answers
56k
views
80 follow
8
answers
Tutorial: Piping With Samtools, Bwa And Bedtools
bedtools tutorial samtools unix bwa written 8.3 years ago by Ying W4.0k • updated 4.7 years ago by Yaseen Ladak30
54
votes
10
answers
7.9k
views
9 follow
10
answers
Tool: Bedtools: Analyzing Genomic Features
bedtools tool written 8.3 years ago by Istvan Albert ♦♦ 84k • updated 5.6 years ago by Aaronquinlan11k
88
votes
3
answers
51k
views
33 follow
3
answers
Bedtools Compare Multiple Bed Files?
bedtools intersect written 8.8 years ago by Bioscientist1.7k • updated 7.5 years ago by sjneph620
18
votes
3
answers
10k
views
13 follow
3
answers
Heatmap Of Read Coverage Around Tsss
bedtools coverage heatmap written 7.0 years ago by A. Domingues2.3k • updated 6.9 years ago by Ying W4.0k
32
votes
3
answers
8.7k
views
13 follow
3
answers
Picking Random Genomic Positions
perl bedtools bash written 8.1 years ago by PoGibas4.8k
32
votes
4
answers
14k
views
17 follow
4
answers
Getting Unmapped Reads: Comparing Fastq To Bam
bedtools fastq bam samtools written 8.7 years ago by User 9996810 • updated 8.7 years ago by brentp23k
36
votes
6
answers
11k
views
19 follow
6
answers
Annotating Genomic Intervals
bedtools annotation bioconductor R written 7.9 years ago by Stephen2.7k • updated 7.9 years ago by Alex Reynolds30k
32
votes
6
answers
26k
views
19 follow
6
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 7.5 years ago by user850 • updated 11 months ago by ATpoint36k
18
votes
5
answers
14k
views
14 follow
5
answers
Discrepancy In Samtools Mpileup/Depth And Bedtools Genomecoveragebed Counts
bedtools samtools written 7.4 years ago by Surya Saha260 • updated 6.8 years ago by plafdesigns40
23
votes
2
answers
7.8k
views
16 follow
2
answers
14
votes
1
answer
2.1k
views
8 follow
1
answer
Tutorial: Introduction to bedtools.
bedtools tutorial written 5.7 years ago by Aaronquinlan11k • updated 3.7 years ago by mcc80
11
votes
0
answers
5.3k
views
0
answers
Tutorial: Plot average methylation levels across TSS region
bedtools R tutorial methylation rrbs written 5.5 years ago by TriS4.2k • updated 5.5 years ago by Gjain5.5k
25
votes
2
answers
27k
views
11 follow
2
answers
Converting Gff To Bed With Bedtools?
bedtools bed gff conversion written 7.5 years ago by user850 • updated 7.5 years ago by Alex Reynolds30k
9
votes
2
answers
7.2k
views
8 follow
2
answers
12
votes
1
answer
3.6k
views
1
answer
How to find intron co-ordinates from the gff file?
bedtools gff open intron written 4.7 years ago by Chirag Parsania1.8k • updated 4.7 years ago by Devon Ryan96k
25
votes
1
answer
22k
views
6 follow
1
answer
How To Use Bedtools To Extract Promoters From A Mouse Bed File
bedtools bed extraction promoter fasta written 8.5 years ago by Anima Mundi2.7k • updated 8.5 years ago by Aaronquinlan11k
15
votes
1
answer
3.7k
views
1
answer
20
votes
3
answers
3.6k
views
7 follow
3
answers
How To Find The Nearest Gene To A Retrotransposon Insert?
bedtools bed position mouse written 8.4 years ago by Joseph Hughes2.8k • updated 8.4 years ago by Alex Reynolds30k
3
votes
1
answer
5.8k
views
1
answer
Intersectbed/Coveragebed -Split Purify Exon?
bedtools intersect coverage written 7.9 years ago by Puriney330 • updated 7.9 years ago by johannes.helmuth110
20
votes
4
answers
9.3k
views
10 follow
4
answers
How To Extract Scores From Bedgraph File Using Bed Tools
bedtools written 7.5 years ago by biorepine1.5k • updated 17 months ago by brianpenghe20
30
votes
5
answers
25k
views
17 follow
5
answers
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools written 7.3 years ago by komal.rathi3.6k • updated 9 months ago by Phoenix Mu20
9
votes
3
answers
3.6k
views
5 follow
3
answers
Memory Efficient Bedtools Sort And Merge With Millions Of Entries?
bedtools bed written 7.3 years ago by 141341254653464453.5k • updated 6.5 years ago by Biostar ♦♦ 20
1
vote
1
answer
3.0k
views
5 follow
1
answer
Creating Bed File For Lncrna Using Gencode Gtf File
bedtools bed written 7.2 years ago by J.F.Jiang830 • updated 7.2 years ago by biorepine1.5k
17
votes
5
answers
8.1k
views
10 follow
5
answers
5
votes
4
answers
2.1k
views
5 follow
4
answers
5
votes
1
answer
2.9k
views
5 follow
1
answer
Genomic Regions To Exclude Before Shuffling Intervals
bedtools written 6.7 years ago by PoGibas4.8k • updated 3.8 years ago by Biostar ♦♦ 20
11
votes
3
answers
4.8k
views
6 follow
3
answers
Filter a bam file
bedtools bed sequence samtools bam written 5.7 years ago by Sophie_lcn30 • updated 5.7 years ago by Jorge Amigo11k
5
votes
1
answer
3.9k
views
1
answer
use bedtools to find overlaps of bed and gff files
bedtools gff written 5.5 years ago by biolab1.2k • updated 5.5 years ago by Vishaka Datta100
22
votes
1
answer
4.7k
views
1
answer
calling bedtools from R
bedtools R written 5.4 years ago by yasjas70 • updated 5.4 years ago by Irsan7.2k
12
votes
3
answers
9.0k
views
3
answers
How to generate BedGraph from BedTools Coverage?
bedtools bed genomic written 4.8 years ago by SmallChess530 • updated 4.8 years ago by Alex Reynolds30k
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