Showing: bedtoolsreset
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109
votes
10
answers
46k
views
75 follow
10
answers
Tutorial: Piping With Samtools, Bwa And Bedtools
bedtools tutorial samtools unix bwa written 6.6 years ago by Ying W3.9k • updated 3.1 years ago by Yaseen Ladak20
54
votes
10
answers
6.9k
views
9 follow
10
answers
Tool: Bedtools: Analyzing Genomic Features
bedtools tool written 6.6 years ago by Istvan Albert ♦♦ 78k • updated 3.9 years ago by Aaronquinlan10k
76
votes
3
answers
40k
views
29 follow
3
answers
Bedtools Compare Multiple Bed Files?
bedtools intersect written 7.1 years ago by Bioscientist1.6k • updated 5.9 years ago by sjneph600
18
votes
3
answers
8.4k
views
13 follow
3
answers
Heatmap Of Read Coverage Around Tsss
bedtools coverage heatmap written 5.3 years ago by A. Domingues1.7k • updated 5.2 years ago by Ying W3.9k
32
votes
3
answers
7.1k
views
13 follow
3
answers
Picking Random Genomic Positions
perl bedtools bash written 6.4 years ago by PoGibas4.7k
17
votes
5
answers
12k
views
13 follow
5
answers
Discrepancy In Samtools Mpileup/Depth And Bedtools Genomecoveragebed Counts
bedtools samtools written 5.7 years ago by Surya Saha250 • updated 5.1 years ago by plafdesigns30
31
votes
4
answers
13k
views
15 follow
4
answers
Getting Unmapped Reads: Comparing Fastq To Bam
bedtools fastq bam samtools written 7.0 years ago by User 9996790 • updated 7.0 years ago by brentp22k
30
votes
4
answers
23k
views
16 follow
4
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 5.8 years ago by user780 • updated 5 months ago by ATpoint10k
14
votes
1
answer
1.7k
views
8 follow
1
answer
Tutorial: Introduction to bedtools.
bedtools tutorial written 4.1 years ago by Aaronquinlan10k • updated 2.0 years ago by mcc80
32
votes
6
answers
9.7k
views
14 follow
6
answers
Annotating Genomic Intervals
bedtools annotation bioconductor R written 6.2 years ago by Stephen2.6k • updated 6.2 years ago by Alex Reynolds26k
23
votes
2
answers
20k
views
11 follow
2
answers
Converting Gff To Bed With Bedtools?
bedtools bed gff conversion written 5.9 years ago by user780 • updated 5.9 years ago by Alex Reynolds26k
21
votes
2
answers
6.1k
views
13 follow
2
answers
9
votes
0
answers
3.8k
views
0
answers
Tutorial: Plot average methylation levels across TSS region
bedtools R tutorial methylation rrbs written 3.9 years ago by TriS3.5k • updated 3.9 years ago by Gjain5.2k
23
votes
1
answer
17k
views
5 follow
1
answer
How To Use Bedtools To Extract Promoters From A Mouse Bed File
bedtools bed extraction promoter fasta written 6.8 years ago by Anima Mundi2.4k • updated 6.8 years ago by Aaronquinlan10k
15
votes
1
answer
3.1k
views
1
answer
18
votes
3
answers
3.2k
views
6 follow
3
answers
How To Find The Nearest Gene To A Retrotransposon Insert?
bedtools bed position mouse written 6.7 years ago by Joseph Hughes2.6k • updated 6.7 years ago by Alex Reynolds26k
3
votes
1
answer
5.1k
views
1
answer
Intersectbed/Coveragebed -Split Purify Exon?
bedtools intersect coverage written 6.2 years ago by Puriney330 • updated 6.2 years ago by johannes.helmuth110
17
votes
3
answers
7.4k
views
8 follow
3
answers
How To Extract Scores From Bedgraph File Using Bed Tools
bedtools written 5.9 years ago by biorepine1.4k • updated 5.3 years ago by Biostar ♦♦ 20
17
votes
4
answers
19k
views
12 follow
4
answers
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools written 5.6 years ago by komal.rathi3.3k • updated 9 weeks ago by Medhat8.0k
9
votes
3
answers
2.8k
views
5 follow
3
answers
Memory Efficient Bedtools Sort And Merge With Millions Of Entries?
bedtools bed written 5.6 years ago by 141341254653464453.4k • updated 4.8 years ago by Biostar ♦♦ 20
1
vote
1
answer
2.4k
views
5 follow
1
answer
Creating Bed File For Lncrna Using Gencode Gtf File
bedtools bed written 5.6 years ago by J.F.Jiang720 • updated 5.6 years ago by biorepine1.4k
17
votes
5
answers
7.0k
views
10 follow
5
answers
5
votes
4
answers
1.8k
views
5 follow
4
answers
5
votes
1
answer
2.5k
views
5 follow
1
answer
Genomic Regions To Exclude Before Shuffling Intervals
bedtools written 5.1 years ago by PoGibas4.7k • updated 2.2 years ago by Biostar ♦♦ 20
7
votes
2
answers
6.1k
views
5 follow
2
answers
22
votes
1
answer
3.5k
views
1
answer
calling bedtools from R
bedtools R written 3.7 years ago by yasjas70 • updated 3.7 years ago by Irsan6.8k
12
votes
3
answers
6.0k
views
3
answers
How to generate BedGraph from BedTools Coverage?
bedtools bed genomic written 3.2 years ago by SmallChess460 • updated 3.2 years ago by Alex Reynolds26k
7
votes
1
answer
2.8k
views
1
answer
16
votes
1
answer
1.7k
views
1
answer
4
votes
0
answers
897
views
5 follow
0
answers
Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 13 months ago by jmzeng131490
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