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<prev • 618 results • page 1 of 21 • next >
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Getting reference sequence for set of reads
bedtools alignment samtools rna-seq written 2 days ago by martin.grasshoff • 0
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bedtools genomecov max function not working correctly
bedtools assembly genomecov written 9 days ago by RBright21 • 10 • updated 9 days ago by ATpoint ♦ 46k
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74
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bedtools genome file
bedtools sequencing written 15 days ago by tom • 0
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Combining bed files from targeted sequencing panels using Bedtools intersect
bedtools forum next-gen written 19 days ago by sdunbarr01 • 10 • updated 19 days ago by zx8754 ♦ 9.9k
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74
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Using multiIntersectBed to filter original bed files
bedtools multiintersectbed written 21 days ago by williamtmills • 0 • updated 20 days ago by Alex Reynolds ♦ 31k
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Extract below 100% overlapping intervals among samples from WGS data
bedtools wgs gatk written 23 days ago by FL512 • 0 • updated 23 days ago by Pierre Lindenbaum ♦ 134k
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Get overlapping features with certain fraction max
genome bedtools written 29 days ago by irfanwustl • 20 • updated 29 days ago by Pierre Lindenbaum ♦ 134k
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154
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1
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Error when trying to convert BAM file to FASTQ.
bedtools samtools written 29 days ago by DNAngel • 120
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bedtools intersect usage problem
bedtools intersect bam written 4 weeks ago by ja4123 • 0 • updated 4 weeks ago by i.sudbery ♦ 11k
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100
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Combine BedTools Closest and Window Command
genome bedtools sequencing snp gwas written 5 weeks ago by Dotty • 0
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122
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How can I give number to data based on length of given columns?
bedtools R written 7 weeks ago by star • 270 • updated 7 weeks ago by rpolicastro ♦ 3.9k
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1
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151
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1
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How to generate a tab limited genome co-odinate file from a reference - bedtools
genome bedtools snp written 10 weeks ago by nitinra • 10
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142
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Obtaining coverage for rna-seq data
bedtools variant calling samtools rna-seq written 11 weeks ago by rotemkat • 10
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1
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212
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Bus Error When Using Bedtools Coverage
bedtools bedtoolscoverage bus error written 11 weeks ago by R • 0 • updated 19 days ago by tim.triche • 10
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195
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What exactly does the -fs flag (fragment size) do in bedtools genomecov/genomeCoverageBed?
bedtools bed bam read mapping written 12 weeks ago by kieft1bp • 0 • updated 12 weeks ago by ATpoint ♦ 46k
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329
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1
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genome coverage visualization
genome bedtools bam coverage written 3 months ago by gubrins • 60 • updated 3 months ago by bernatgel • 2.9k
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1
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139
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1
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compare two groups of multiple bed files
bedtools bedfiles written 3 months ago by blur • 180 • updated 3 months ago by Alex Reynolds ♦ 31k
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242
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5 follow
1
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bedtools multiple BAM files
bedtools shellscript bamtobed written 3 months ago by amitpande74 • 20
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233
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Problem with bedtools intersect with two gtfs
gtf bedtools intersect rna-seq written 3 months ago by newbie • 90
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223
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Merging and then unmerging small contigs
bedtools mosdepth written 3 months ago by Philipp Bayer ♦ 6.9k
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1
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253
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1
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How to run bedtools from inside a python program
bedtools python commandline written 4 months ago by banerjeeshayantan • 190 • updated 4 months ago by Joe ♦ 19k
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207
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1
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Merge coordinates by gene ID
bedtools bed bedops bash written 4 months ago by r.tor • 50
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1
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172
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1
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Bedtools fisher test error
bedtools fisher written 4 months ago by emilyprice16 • 20 • updated 4 months ago by Ram ♦ 32k
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5 follow
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Using bedtools to identify genes that have overlapping chip-seq peaks
bedtools chip-seq written 4 months ago by dk0319 • 20 • updated 4 months ago by Biological information research group of Harbin medical university daqing campus • 10
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168
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How to calculate number of fragment and its coverage from BAM file?
genome bedtools alignment rna-seq written 4 months ago by star • 270
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183
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Bedtools to make a bed file for promoter
bedtools written 4 months ago by pixie@bioinfo • 1.4k • updated 4 months ago by seidel ♦ 7.4k
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1
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204
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1
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Does bedtools intersect output overlaps with isoforms?
bedtools isoforms written 5 months ago by kmkdesilva • 90 • updated 5 months ago by Kevin Blighe ♦ 71k
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159
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1
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Extract non-repetitive DNA sequence
bedtools written 5 months ago by huiyus97 • 0 • updated 5 months ago by JC ♦ 12k
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2
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193
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2
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Bedtools merge messing chromosome start - end points
genome bedtools merge merge bedtools written 5 months ago by nitinra • 10 • updated 5 months ago by Jorge Amigo ♦ 12k
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266
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Plotting large file size of bedtools genomecov output
bedtools genomecov genome coverage depth written 5 months ago by nitinra • 10 • updated 5 months ago by Pierre Lindenbaum ♦ 134k
<prev • 618 results • page 1 of 21 • next >
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