Showing: bedtoolsreset
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113
votes
8
answers
53k
views
77 follow
8
answers
Tutorial: Piping With Samtools, Bwa And Bedtools
bedtools tutorial samtools unix bwa written 7.7 years ago by Ying W4.0k • updated 4.2 years ago by Yaseen Ladak30
83
votes
3
answers
47k
views
31 follow
3
answers
Bedtools Compare Multiple Bed Files?
bedtools intersect written 8.2 years ago by Bioscientist1.7k • updated 7.0 years ago by sjneph600
36
votes
6
answers
11k
views
19 follow
6
answers
Annotating Genomic Intervals
bedtools annotation bioconductor R written 7.3 years ago by Stephen2.7k • updated 7.3 years ago by Alex Reynolds29k
32
votes
6
answers
25k
views
19 follow
6
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 6.9 years ago by user840 • updated 4 months ago by ATpoint28k
32
votes
4
answers
14k
views
17 follow
4
answers
Getting Unmapped Reads: Comparing Fastq To Bam
bedtools fastq bam samtools written 8.1 years ago by User 9996810 • updated 8.1 years ago by brentp23k
28
votes
5
answers
23k
views
17 follow
5
answers
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools written 6.7 years ago by komal.rathi3.5k • updated 11 weeks ago by Phoenix Mu10
23
votes
2
answers
7.2k
views
16 follow
2
answers
15
votes
4
answers
7.3k
views
14 follow
4
answers
32
votes
3
answers
8.3k
views
13 follow
3
answers
Picking Random Genomic Positions
perl bedtools bash written 7.5 years ago by PoGibas4.8k
17
votes
5
answers
13k
views
13 follow
5
answers
Discrepancy In Samtools Mpileup/Depth And Bedtools Genomecoveragebed Counts
bedtools samtools written 6.8 years ago by Surya Saha260 • updated 6.2 years ago by plafdesigns30
18
votes
3
answers
9.7k
views
13 follow
3
answers
Heatmap Of Read Coverage Around Tsss
bedtools coverage heatmap written 6.4 years ago by A. Domingues2.2k • updated 6.3 years ago by Ying W4.0k
25
votes
2
answers
25k
views
11 follow
2
answers
Converting Gff To Bed With Bedtools?
bedtools bed gff conversion written 7.0 years ago by user840 • updated 7.0 years ago by Alex Reynolds29k
20
votes
4
answers
8.7k
views
10 follow
4
answers
How To Extract Scores From Bedgraph File Using Bed Tools
bedtools written 7.0 years ago by biorepine1.4k • updated 10 months ago by brianpenghe20
17
votes
5
answers
7.7k
views
10 follow
5
answers
54
votes
10
answers
7.6k
views
9 follow
10
answers
Tool: Bedtools: Analyzing Genomic Features
bedtools tool written 7.7 years ago by Istvan Albert ♦♦ 82k • updated 5.0 years ago by Aaronquinlan11k
11
votes
5
answers
16k
views
9 follow
5
answers
How Can I Compare And Merge Bed Files
bedtools bed written 7.5 years ago by lyfsa30 • updated 6.7 years ago by beary.pooh10
13
votes
2
answers
3.1k
views
9 follow
2
answers
Converting large (compressed and unsorted) BAM files to fastq
bedtools picard fatsq alignment bam written 3.2 years ago by alesssia560 • updated 3.2 years ago by Brian Bushnell17k
17
votes
3
answers
2.4k
views
8 follow
3
answers
Simple Redirection, I/O Problem With Bedtools
bedtools bash intersect pipeline linux written 7.0 years ago by Sukhdeep Singh10.0k • updated 7.0 years ago by Ryan Dale4.9k
8
votes
2
answers
6.4k
views
8 follow
2
answers
Error In Bedtools Getfasta: Chromosome Not Found
bedtools error written 7.0 years ago by Pat Baldrich10 • updated 3.3 years ago by Prakki Rama2.4k
6
votes
3
answers
7.4k
views
8 follow
3
answers
How To Install Bedtools In A User Directory
bedtools written 6.6 years ago by alittleboy210 • updated 5.8 years ago by paulr80
9
votes
2
answers
6.8k
views
8 follow
2
answers
14
votes
1
answer
2.0k
views
8 follow
1
answer
Tutorial: Introduction to bedtools.
bedtools tutorial written 5.2 years ago by Aaronquinlan11k • updated 3.1 years ago by mcc80
28
votes
3
answers
6.0k
views
7 follow
3
answers
20
votes
3
answers
3.5k
views
7 follow
3
answers
How To Find The Nearest Gene To A Retrotransposon Insert?
bedtools bed position mouse written 7.8 years ago by Joseph Hughes2.8k • updated 7.8 years ago by Alex Reynolds29k
10
votes
3
answers
2.9k
views
7 follow
3
answers
How Can I Include One Bed File In Another Bed File ?
bedtools merge written 6.5 years ago by fmfshog0 • updated 6.5 years ago by sjneph600
7
votes
2
answers
666
views
7 follow
2
answers
3
votes
1
answer
728
views
7 follow
1
answer
Bedtools intersect alternatives available
bedtools written 15 months ago by Jeffin Rockey1.1k • updated 15 months ago by Alex Reynolds29k
8
votes
1
answer
477
views
7 follow
1
answer
25
votes
1
answer
20k
views
6 follow
1
answer
How To Use Bedtools To Extract Promoters From A Mouse Bed File
bedtools bed extraction promoter fasta written 8.0 years ago by Anima Mundi2.5k • updated 8.0 years ago by Aaronquinlan11k
11
votes
2
answers
5.2k
views
6 follow
2
answers
Counting The Whole Insert Size From Paired-End Reads As Coverage
bedtools paired written 7.9 years ago by Alastair Kerr5.2k • updated 7.9 years ago by Aaronquinlan11k
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