Showing: bedtoolsreset
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110
votes
10
answers
50k
views
75 follow
10
answers
Tutorial: Piping With Samtools, Bwa And Bedtools
bedtools tutorial samtools unix bwa written 7.1 years ago by Ying W3.9k • updated 3.6 years ago by Yaseen Ladak20
81
votes
3
answers
44k
views
31 follow
3
answers
Bedtools Compare Multiple Bed Files?
bedtools intersect written 7.6 years ago by Bioscientist1.7k • updated 6.4 years ago by sjneph600
30
votes
4
answers
24k
views
16 follow
4
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 6.3 years ago by user790 • updated 11 months ago by ATpoint18k
23
votes
2
answers
6.6k
views
16 follow
2
answers
31
votes
4
answers
13k
views
15 follow
4
answers
Getting Unmapped Reads: Comparing Fastq To Bam
bedtools fastq bam samtools written 7.5 years ago by User 9996800 • updated 7.5 years ago by brentp23k
34
votes
6
answers
10k
views
15 follow
6
answers
Annotating Genomic Intervals
bedtools annotation bioconductor R written 6.7 years ago by Stephen2.7k • updated 6.7 years ago by Alex Reynolds28k
25
votes
4
answers
21k
views
15 follow
4
answers
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools written 6.1 years ago by komal.rathi3.4k • updated 8 months ago by Medhat8.3k
15
votes
4
answers
6.2k
views
14 follow
4
answers
32
votes
3
answers
7.7k
views
13 follow
3
answers
Picking Random Genomic Positions
perl bedtools bash written 6.9 years ago by PoGibas4.8k
17
votes
5
answers
13k
views
13 follow
5
answers
Discrepancy In Samtools Mpileup/Depth And Bedtools Genomecoveragebed Counts
bedtools samtools written 6.2 years ago by Surya Saha260 • updated 5.6 years ago by plafdesigns30
18
votes
3
answers
9.1k
views
13 follow
3
answers
Heatmap Of Read Coverage Around Tsss
bedtools coverage heatmap written 5.8 years ago by A. Domingues2.1k • updated 5.8 years ago by Ying W3.9k
24
votes
2
answers
22k
views
11 follow
2
answers
Converting Gff To Bed With Bedtools?
bedtools bed gff conversion written 6.4 years ago by user790 • updated 6.4 years ago by Alex Reynolds28k
20
votes
4
answers
7.9k
views
10 follow
4
answers
How To Extract Scores From Bedgraph File Using Bed Tools
bedtools written 6.4 years ago by biorepine1.4k • updated 3 months ago by brianpenghe20
17
votes
5
answers
7.4k
views
10 follow
5
answers
54
votes
10
answers
7.3k
views
9 follow
10
answers
Tool: Bedtools: Analyzing Genomic Features
bedtools tool written 7.2 years ago by Istvan Albert ♦♦ 80k • updated 4.5 years ago by Aaronquinlan11k
13
votes
2
answers
2.5k
views
9 follow
2
answers
Converting large (compressed and unsorted) BAM files to fastq
bedtools picard fatsq alignment bam written 2.6 years ago by alesssia520 • updated 2.6 years ago by Brian Bushnell16k
7
votes
6
answers
15k
views
8 follow
6
answers
How Can I Compare And Merge Bed Files
bedtools bed written 6.9 years ago by lyfsa30 • updated 6.2 years ago by beary.pooh10
17
votes
3
answers
2.2k
views
8 follow
3
answers
Simple Redirection, I/O Problem With Bedtools
bedtools bash intersect pipeline linux written 6.4 years ago by Sukhdeep Singh9.8k • updated 6.4 years ago by Ryan Dale4.8k
8
votes
2
answers
5.7k
views
8 follow
2
answers
Error In Bedtools Getfasta: Chromosome Not Found
bedtools error written 6.4 years ago by Pat Baldrich10 • updated 2.7 years ago by Prakki Rama2.3k
6
votes
3
answers
6.8k
views
8 follow
3
answers
How To Install Bedtools In A User Directory
bedtools written 6.0 years ago by alittleboy210 • updated 5.2 years ago by paulr80
9
votes
2
answers
6.5k
views
8 follow
2
answers
14
votes
1
answer
1.8k
views
8 follow
1
answer
Tutorial: Introduction to bedtools.
bedtools tutorial written 4.6 years ago by Aaronquinlan11k • updated 2.5 years ago by mcc80
28
votes
3
answers
5.8k
views
7 follow
3
answers
20
votes
3
answers
3.3k
views
7 follow
3
answers
How To Find The Nearest Gene To A Retrotransposon Insert?
bedtools bed position mouse written 7.2 years ago by Joseph Hughes2.7k • updated 7.2 years ago by Alex Reynolds28k
10
votes
3
answers
2.6k
views
7 follow
3
answers
How Can I Include One Bed File In Another Bed File ?
bedtools merge written 5.9 years ago by fmfshog0 • updated 5.9 years ago by sjneph600
7
votes
2
answers
506
views
7 follow
2
answers
3
votes
1
answer
480
views
7 follow
1
answer
Bedtools intersect alternatives available
bedtools written 8 months ago by Jeffin Rockey1.1k • updated 8 months ago by Alex Reynolds28k
8
votes
1
answer
320
views
7 follow
1
answer
24
votes
1
answer
19k
views
6 follow
1
answer
How To Use Bedtools To Extract Promoters From A Mouse Bed File
bedtools bed extraction promoter fasta written 7.4 years ago by Anima Mundi2.4k • updated 7.4 years ago by Aaronquinlan11k
11
votes
2
answers
5.0k
views
6 follow
2
answers
Counting The Whole Insert Size From Paired-End Reads As Coverage
bedtools paired written 7.3 years ago by Alastair Kerr5.2k • updated 7.3 years ago by Aaronquinlan11k
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