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Filtering reads aligned to specific chromosome
bamtofastq bedtools bam sam snp written 4.4 years ago by signauncreal0 • updated 11 days ago by Biostar ♦♦ 20
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intersection of two GFFs
bedtools gff intersect written 7 weeks ago by BioDH0 • updated 22 days ago by Biostar ♦♦ 20
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bedtools closest - result for only the first query
bedtools software error closest bed written 2.4 years ago by yjyj0 • updated 7 weeks ago by Biostar ♦♦ 20
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Bedtools intersect with header file
bedtools written 8 months ago by irfanwustl0 • updated 7 weeks ago by Alex Reynolds30k
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Putting bedtools in the path
bedtools bedops samtools written 8 weeks ago by A3.8k
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Find consensus overlap between many bed files
genome bedtools intersect overlap written 2.1 years ago by goodez480 • updated 8 weeks ago by Biostar ♦♦ 20
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Bedtools genome coverage
bedtools genome coverage coverage nanopore genome written 9 weeks ago by sl168780 • updated 9 weeks ago by Pierre Lindenbaum129k
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Calculate gene % covered at depth X
genome bedtools alignment written 9 weeks ago by ellieuk10 • updated 9 weeks ago by zx87549.4k
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Bash script problem
bedtools bash written 10 weeks ago by valastesolutions0 • updated 10 weeks ago by lieven.sterck8.2k
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Combining multiple bedfiles
bedtools bed written 2.2 years ago by christacaggiano50 • updated 10 weeks ago by Biostar ♦♦ 20
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from unmapped bam file picard samtofastq produced no output
bedtools picard rna-seq written 4 months ago by Rashedul Islam370 • updated 12 weeks ago by kunleisaac820
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How can I make a BED file from a VCF file?
bedtools bed files written 3 months ago by VictoriaP0 • updated 3 months ago by Brice Sarver3.5k
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Coverage per gene
gene coverage bed bed files bedtools written 3 months ago by gabri.mochales30 • updated 3 months ago by ATpoint36k
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generate a matrix of gene expressions and TFs from bed files
bedtools atac_seq written 4 months ago by el2410 • updated 3 months ago by Biostar ♦♦ 20
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