Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing: bedtools • reset
or   Classic search
<prev • 111 results • page 1 of 4 • next >
3
votes
1
answer
811
views
5 follow
1
answer
Detecting expression in intergenic regions
bedtools genome rna-seq written 15 months ago by A. Domingues • 1.8k
2
votes
1
answer
75
views
1
answer
Identify deletion in multiple bam files compared to the same bacterial reference
bedtools bam written 8 days ago by David • 140
0
votes
1
answer
72
views
1
answer
ChIP-Seq density plot of the TSS regions?
bedtools deeptools ase chip-seq igv written 12 days ago by Susmita Mandal • 20 • updated 12 days ago by i.sudbery ♦ 3.8k
1
vote
1
answer
125
views
1
answer
Customising bedtools shuffle command
bedtools enhancers shuffle transcription factors written 17 days ago by kdc15 • 0 • updated 16 days ago by geek_y ♦ 9.1k
4
votes
1
answer
108
views
1
answer
bedtools subtract still overlaps by 1bp?
bedtools subtract slop getfasta written 18 days ago by Anand Rao • 210 • updated 18 days ago by finswimmer ♦ 9.9k
5
votes
1
answer
118
views
1
answer
Per-base coverage to bedgraph or bigwig
bedtools bigwig bam coverage written 19 days ago by pyKey • 40
1
vote
1
answer
74
views
1
answer
Merging peak files for unionized set
bedtools next-gen atac-seq written 20 days ago by aam458 • 0 • updated 20 days ago by trausch • 1.2k
3
votes
0
answers
145
views
0
answers
Tutorial: Using Bedtools Closest (closestBed) to make distance histograms of protein binding frequency near all types of pre-RNA junctions (e.g. exon-intron and intron-exon)
bedtools bed bedtools closest closestbed prerna tutorial written 23 days ago by linuxborg2 • 0 • updated 23 days ago by RamRS ♦ 20k
1
vote
1
answer
178
views
1
answer
Incompatibility issue with fasta and GFF (fasta2GFF)
bedtools fasta2gff mapping written 25 days ago by jaqx008 • 40
1
vote
1
answer
105
views
1
answer
Find the 3' utrs, 5'utrs and their counts from bam files
bedtools bed bam utr ucsc written 28 days ago by ilovesuperheroes1993 • 0 • updated 28 days ago by Gautier Richard • 240
15
votes
6
answers
5.5k
views
13 follow
6
answers
bedtools coverage gives error received illegal bin number, but that number isn't in my data!
bedtools bin chip-seq coverage error written 2.0 years ago by tara.alpert • 30 • updated 29 days ago by pangxy3 • 0
1
vote
1
answer
102
views
1
answer
Gene coverage from Bam files
bedtools written 4 weeks ago by David • 140 • updated 4 weeks ago by finswimmer ♦ 9.9k
1
vote
0
answers
96
views
0
answers
bedtools, merge function: avoid merging intervals if separated by a single base
bedtools merge single_base_separation written 4 weeks ago by gabri • 50 • updated 4 weeks ago by finswimmer ♦ 9.9k
0
votes
0
answers
146
views
0
answers
Renaming fasta files with chromosomes
fasta bedtools chromosome written 5 weeks ago by namea38 • 0
7
votes
3
answers
2.0k
views
3
answers
Finding Chip Seq Overlaps with Bed files
bedtools chip-seq bedops bedmap written 3.2 years ago by morovatunc • 400
0
votes
1
answer
119
views
1
answer
Bedtools Merge .bed file with unique ID column
bedtools .bed written 9 weeks ago by reece • 0 • updated 9 weeks ago by ATpoint ♦ 13k
4
votes
1
answer
166
views
1
answer
Script for changing genes nomenclature
bedtools scripting rna-seq written 9 weeks ago by Francisco Muñoz • 0 • updated 9 weeks ago by vkkodali • 950
3
votes
1
answer
154
views
5 follow
1
answer
BedtoBam error: Why is this?
bedtools bedtobam rna-seq getfasta written 10 weeks ago by jaqx008 • 40 • updated 10 weeks ago by Pierre Lindenbaum ♦ 116k
1
vote
1
answer
211
views
5 follow
1
answer
'Error: Unable to open file test1.bed. Exiting' , Bedtools help
bedtools .bed mergebed written 10 weeks ago by reece • 0 • updated 10 weeks ago by ATpoint ♦ 13k
0
votes
2
answers
198
views
2
answers
bedtools complement error
bedtools written 11 weeks ago by bk11 • 30 • updated 11 weeks ago by Alex Reynolds ♦ 27k
4
votes
1
answer
161
views
1
answer
bedtools multicov - tab-delimited bam files?
bedtools tab-delimited multicov error message written 11 weeks ago by susibing • 20
0
votes
0
answers
138
views
0
answers
Expression data from cufflinks merged gtf
bedtools gtf stringtie rna-seq written 11 weeks ago by ddowlin • 70
5
votes
2
answers
197
views
2
answers
bedtools intersect with match on name column
bedtools intersectbed written 11 weeks ago by corend • 70
7
votes
5
answers
200
views
5 follow
5
answers
Pulling out interval adjoining regions
bedtools bed bedops interval written 12 weeks ago by rbronste • 230 • updated 11 weeks ago by Alex Reynolds ♦ 27k
0
votes
0
answers
152
views
0
answers
Closest features sort by set distance
bedtools bed bedops intervals written 3 months ago by rbronste • 230
0
votes
1
answer
158
views
1
answer
Read depth interval comparison
read depth bed bedops bam bedtools written 3 months ago by rbronste • 230 • updated 3 months ago by Pierre Lindenbaum ♦ 116k
3
votes
2
answers
174
views
2
answers
Extending BED intervals
bedtools bed bedops interval written 3 months ago by rbronste • 230 • updated 3 months ago by Alex Reynolds ♦ 27k
6
votes
2
answers
249
views
2
answers
find coverage of specific exomes from a bam file
bedtools genomecov bam coverage bed written 3 months ago by lait • 120 • updated 3 months ago by Pierre Lindenbaum ♦ 116k
4
votes
2
answers
225
views
2
answers
coverage of a SNP site?
bedtools ngs ase coverage snp written 3 months ago by Susmita Mandal • 20 • updated 3 months ago by Kevin Blighe ♦ 37k
2
votes
1
answer
342
views
1
answer
Bedtools Error: Type checker found wrong number of fields while tokenizing data line.
bedtools written 3 months ago by User 7754 • 170 • updated 3 months ago by Alex Reynolds ♦ 27k
<prev • 111 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • United Kingdom, just now
  • Ireland, just now
  • Sweden, 2 minutes ago
  • France/Nantes/Institut du Thorax - INSERM UMR1087, 4 minutes ago
  • Netherlands, 4 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2152 users visited in the last hour