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<prev • 91 results • page 1 of 4 • next >
4
votes
1
answer
94
views
1
answer
Merge coordinates by gene ID
bedtools bed bedops bash written 4 days ago by r.tor • 40
1
vote
1
answer
102
views
5 follow
1
answer
Using bedtools to identify genes that have overlapping chip-seq peaks
bedtools chip-seq written 9 days ago by danekhoffman0319 • 0 • updated 7 days ago by Biological information research group of Harbin medical university daqing campus • 10
0
votes
1
answer
56
views
1
answer
Bedtools fisher test error
bedtools fisher written 9 days ago by emilyprice16 • 20 • updated 9 days ago by RamRS ♦ 30k
2
votes
1
answer
69
views
1
answer
How to calculate number of fragment and its coverage from BAM file?
genome bedtools alignment rna-seq written 14 days ago by star • 260
1
vote
2
answers
1.4k
views
2
answers
BED intersects/overlaps output for Venn diagrams - single column
bedtools bedops written 3.4 years ago by rbronste • 360 • updated 16 days ago by esimonova.me • 0
1
vote
1
answer
89
views
1
answer
Bedtools to make a bed file for promoter
bedtools written 18 days ago by pixie@bioinfo • 1.4k • updated 18 days ago by seidel ♦ 7.1k
1
vote
1
answer
134
views
1
answer
Generate BED12 file from genomic coordinates
bedtools bed12 ucsc written 22 days ago by Barry Digby • 500
2
votes
2
answers
2.1k
views
2
answers
problem with bedtools complement: how to extract strand information?
bedtools written 6.0 years ago by biolab • 1.2k • updated 28 days ago by deepali.kundnani • 0
2
votes
1
answer
124
views
1
answer
Does bedtools intersect output overlaps with isoforms?
bedtools isoforms written 5 weeks ago by kmkdesilva • 90 • updated 4 weeks ago by Kevin Blighe ♦ 66k
0
votes
1
answer
99
views
1
answer
Extract non-repetitive DNA sequence
bedtools written 5 weeks ago by huiyus97 • 0 • updated 5 weeks ago by JC ♦ 12k
3
votes
3
answers
149
views
5 follow
3
answers
bedtools sort doesn't properly sort
bedtools written 6 weeks ago by vctrm67 • 20 • updated 5 weeks ago by Jorge Amigo ♦ 12k
0
votes
2
answers
119
views
2
answers
Bedtools merge messing chromosome start - end points
genome bedtools merge merge bedtools written 5 weeks ago by nitinra • 0 • updated 5 weeks ago by Jorge Amigo ♦ 12k
8
votes
1
answer
4.7k
views
1
answer
Bedtools Intersectbed
bedtools intersect coverage written 9.0 years ago by Ian ♦ 5.7k • updated 5 weeks ago by Biostar ♦♦ 20
3
votes
1
answer
122
views
1
answer
Plotting large file size of bedtools genomecov output
bedtools genomecov genome coverage depth written 6 weeks ago by nitinra • 0 • updated 6 weeks ago by Pierre Lindenbaum ♦ 131k
0
votes
0
answers
99
views
0
answers
bedtools closest default?
bedtools written 6 weeks ago by vctrm67 • 20
1
vote
1
answer
177
views
1
answer
Bedtools - can I operate two operations same time, and on the same database?
bedtools written 7 weeks ago by Waly • 0 • updated 7 weeks ago by Alex Reynolds ♦ 31k
0
votes
0
answers
152
views
0
answers
How can I add sequences to my BED file?
bedtools bed written 9 weeks ago by saygingulec • 0
0
votes
2
answers
169
views
2
answers
Comparing peaks between multiple samples
bedtools chip-seq written 10 weeks ago by emilyprice16 • 20 • updated 9 weeks ago by Rory Stark • 860
0
votes
0
answers
238
views
0
answers
About calculating the GC content in a sliding window
bedtools gccontent written 10 weeks ago by jon.brate • 250
2
votes
2
answers
166
views
2
answers
Extract exact match from bed files
bedtools bed bedops written 11 weeks ago by brown.annaleigh • 10 • updated 11 weeks ago by Alex Reynolds ♦ 31k
1
vote
0
answers
142
views
0
answers
How to get similar naming protein seqs and gff from downloaded genome files
genome bedtools gff unix written 11 weeks ago by T_18 • 40
3
votes
0
answers
228
views
0
answers
Tutorial: Real World BEDtools. Practical Examples for Variant Filtering and Gene Annotations
bedtools bed tutorial lesson video written 12 weeks ago by sdsubaru33 • 30
0
votes
0
answers
210
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0
answers
To remove variants that encode for PE-PPE proteins from .vcf file
bedtools annovar vcftools written 3 months ago by kumari.indu31 • 0
0
votes
2
answers
2.0k
views
2
answers
Filtering reads aligned to specific chromosome
bamtofastq bedtools bam sam snp written 4.6 years ago by signauncreal • 0 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
206
views
0
answers
intersection of two GFFs
bedtools gff intersect written 4 months ago by BioDH • 0 • updated 3 months ago by Biostar ♦♦ 20
1
vote
0
answers
112
views
0
answers
Intersecting unbalanced BED files, normalizing for one
bedtools bedops written 3 months ago by LacquerHed • 0
0
votes
0
answers
124
views
0
answers
Understanding BEDtools summary output
bedtools bed summary man written 3 months ago by brismiller • 40
0
votes
0
answers
138
views
0
answers
find co-ordinates of overlapping fasta sequences
bedtools fasta micrornas written 4 months ago by sg197 • 20
0
votes
0
answers
135
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0
answers
Creating a bed file from a de novo fasta file
bedtools assembly metagenomics written 4 months ago by c.e.chong • 20
0
votes
0
answers
152
views
0
answers
Question about the parameter -fs in bedtools.
bedtools written 4 months ago by Spencer • 20
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