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<prev • 94 results • page 1 of 4 • next >
3
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1
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1.3k
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1
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Getting Bedtools Error
bedtools written 5.6 years ago by raghus606 • 10 • updated 8 hours ago by Biostar ♦♦ 20
5
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1
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91
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1
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How can I give number to data based on length of given columns?
bedtools R written 12 days ago by star • 270 • updated 12 days ago by rpolicastro ♦ 3.2k
4
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1
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119
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1
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How to generate a tab limited genome co-odinate file from a reference - bedtools
genome bedtools snp written 4 weeks ago by nitinra • 10
2
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1
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2.9k
views
1
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Error when using Bedtools fisher on sorted bed files
bedtools fisher test chip-seq written 5.0 years ago by Apoorva • 270 • updated 4 weeks ago by chrisclarkson100 • 90
0
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0
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116
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0
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Obtaining coverage for rna-seq data
bedtools variant calling samtools rna-seq written 5 weeks ago by rotemkat • 10
0
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0
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139
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0
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Bus Error When Using Bedtools Coverage
bedtools bedtoolscoverage bus error written 5 weeks ago by R • 0
0
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1
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145
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1
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What exactly does the -fs flag (fragment size) do in bedtools genomecov/genomeCoverageBed?
bedtools bed bam read mapping written 6 weeks ago by kieft1bp • 0 • updated 6 weeks ago by ATpoint ♦ 44k
5
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1
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2.5k
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7 follow
1
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Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 3.2 years ago by jmzeng1314 • 110 • updated 7 weeks ago by ATpoint ♦ 44k
8
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1
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224
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1
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genome coverage visualization
genome bedtools bam coverage written 8 weeks ago by gubrins • 60 • updated 7 weeks ago by bernatgel • 2.8k
0
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1
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118
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1
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compare two groups of multiple bed files
bedtools bedfiles written 8 weeks ago by blur • 150 • updated 8 weeks ago by Alex Reynolds ♦ 31k
3
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1
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207
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5 follow
1
answer
bedtools multiple BAM files
bedtools shellscript bamtobed written 9 weeks ago by amitpande74 • 10
1
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0
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201
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0
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Problem with bedtools intersect with two gtfs
gtf bedtools intersect rna-seq written 9 weeks ago by newbie • 90
1
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0
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200
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0
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Merging and then unmerging small contigs
bedtools mosdepth written 9 weeks ago by Philipp Bayer ♦ 6.9k
1
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1
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166
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1
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How to run bedtools from inside a python program
bedtools python commandline written 11 weeks ago by banerjeeshayantan • 190 • updated 11 weeks ago by Joe ♦ 18k
4
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1
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184
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1
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Merge coordinates by gene ID
bedtools bed bedops bash written 12 weeks ago by r.tor • 40
2
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0
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252
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5 follow
0
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Using bedtools to identify genes that have overlapping chip-seq peaks
bedtools chip-seq written 3 months ago by dk0319 • 20 • updated 12 weeks ago by Biological information research group of Harbin medical university daqing campus • 10
0
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1
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150
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1
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Bedtools fisher test error
bedtools fisher written 3 months ago by emilyprice16 • 20 • updated 3 months ago by _r_am ♦ 32k
2
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1
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138
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1
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How to calculate number of fragment and its coverage from BAM file?
genome bedtools alignment rna-seq written 3 months ago by star • 270
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2
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1.5k
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2
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BED intersects/overlaps output for Venn diagrams - single column
bedtools bedops written 3.6 years ago by rbronste • 370 • updated 3 months ago by esimonova.me • 0
1
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1
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164
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1
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Bedtools to make a bed file for promoter
bedtools written 3 months ago by pixie@bioinfo • 1.4k • updated 3 months ago by seidel ♦ 7.1k
2
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2
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2.1k
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2
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problem with bedtools complement: how to extract strand information?
bedtools written 6.2 years ago by biolab • 1.2k • updated 3 months ago by deepali.kundnani • 0
2
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1
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182
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1
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Does bedtools intersect output overlaps with isoforms?
bedtools isoforms written 3 months ago by kmkdesilva • 90 • updated 3 months ago by Kevin Blighe ♦ 69k
0
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1
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144
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1
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Extract non-repetitive DNA sequence
bedtools written 3 months ago by huiyus97 • 0 • updated 3 months ago by JC ♦ 12k
3
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3
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219
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5 follow
3
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bedtools sort doesn't properly sort
bedtools written 4 months ago by vctrm67 • 20 • updated 3 months ago by Jorge Amigo ♦ 12k
0
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2
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177
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2
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Bedtools merge messing chromosome start - end points
genome bedtools merge merge bedtools written 4 months ago by nitinra • 10 • updated 3 months ago by Jorge Amigo ♦ 12k
8
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1
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4.9k
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1
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Bedtools Intersectbed
bedtools intersect coverage written 9.2 years ago by Ian ♦ 5.7k • updated 4 months ago by Biostar ♦♦ 20
3
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1
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217
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1
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Plotting large file size of bedtools genomecov output
bedtools genomecov genome coverage depth written 4 months ago by nitinra • 10 • updated 4 months ago by Pierre Lindenbaum ♦ 133k
0
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0
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158
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0
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bedtools closest default?
bedtools written 4 months ago by vctrm67 • 20
1
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1
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227
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1
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Bedtools - can I operate two operations same time, and on the same database?
bedtools written 4 months ago by Waly • 0 • updated 4 months ago by Alex Reynolds ♦ 31k
0
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0
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223
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0
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How can I add sequences to my BED file?
bedtools bed written 4 months ago by saygingulec • 0
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