bedtools Posts

C: Protein_Change in MAF by Collin • 850
For additional reference, the description of the HGVS format can be found on their website (https...
C: Virus core genome by Salsabil • 0
Update: I ended up retrieving GFF3 annotation files directly from NCBI, so the annotation proble...
C: Merge TPM for transcripts to genes Kallisto by newbie • 90
Hi Andrew, Can you please help me with this [Is it good to merge transcripts tpm to gene which is...
A: Prediction of domains of a protein and LRR domains by brunabavelino • 0
Thank you very much. ️
A: Quantify leucine-rich repeats (LRR) by brunabavelino • 0
Yes, thank you very much. In a job I saw that only using the NCBI's CDD was able to identify that...
C: TCGA driver mutation data by Collin • 850
Lastly, if you also want to predict driver missense mutations in new tumor samples outside of the...
C: TCGA driver mutation data by Collin • 850
Many clinical interpretation guidelines clearly delineate that missense mutation in a known disea...
C: TCGA driver mutation data by Collin • 850
For loss-of-function mutations in tumor suppressors, you might look at the genes annotated as tum...
C: TCGA driver mutation data by Collin • 850
My understanding is that question refers to driver *mutations*. MutPanning is a *gene*-based meth...
C: TCGA driver mutation data by Collin • 850
I'm one of the first authors of that paper. The data is available on the Genomic Data Commons w...
C: Quantify leucine-rich repeats (LRR) by Mensur Dlakic • 7.0k
According to one of these predictors, the whole C-terminal part of your protein (starting at resi...
A: Quantify leucine-rich repeats (LRR) by Mensur Dlakic • 7.0k
A simple [**Google search**][1] identifies many resources: - https://journals.sagepub.com/doi/f...

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