bedtools Posts

C: Using samtools to view an indexed file in a private S3 bucket by Brice Sarver • 2.6k
You're getting a permission denied error - have you confirmed that your ID and key have the appro...
C: Multiple Sequence Alignment for >20 Sequences by Brice Sarver • 2.6k
Are you aligning alignments or constructing MSAs from batches of genes/genomes? What's your input...
C: NAs in TCGA methylation 450k beta data by zephyr_falcon • 40
I already tested the data with detection p-values.. (mentioned in the question) The NAs were prod...
C: Read-based phasing with WhatsHap by Vitis • 2.2k
This has been an excellent tool! Really great work from the authors. In addition, I've been tryin...
A: GEO differential expression analysis by zephyr_falcon • 40
That's probably because of multiple testing. If you perform DE analysis BEFORE removing duplicate...
C: Multiple Sequence Alignment for >20 Sequences by genomax ♦ 68k
Are you referring to online/web based tools? When used on the command line none of the tools shou...
C: How to get ENTREZ ID and SYMBOL to my gene notation in Saccharomyces cerevisiae by cesarihv7 • 0
hi again, when I closed session in R I tried the command again select(sc, keys = my.simbols, col...
C: Alignement of 2 fast files already aligned by jrj.healey ♦ 12k
Ok, that's quite straight forward. Can you explain your requirement for BioPython more? Do the a...
C: what is the fastest way to extract reads of a specific barcode from a fastq by genomax ♦ 68k
There is also a previously posted solution here that uses `deML` program : https://www.biostars.o...
C: Alignment algorithm for unordered blocks or domains by jrj.healey ♦ 12k
I'm not sure if this is exactly what you're looking for, since this is for multiple genes, rather...
C: paired-end fastq file by evelyn • 30
Thanks, so I am using this to calculate the `coverage` for input `fastq` file: Length of read=151...
C: Alignement of 2 fast files already aligned by ptitfab94 • 0
Yes sorry if i'm not clear, it is exactly like "Take all the sequences from both alignments, de-a...

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