Showing: bedtoolsreset
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109
votes
10
answers
46k
views
75 follow
10
answers
Tutorial: Piping With Samtools, Bwa And Bedtools
bedtools tutorial samtools unix bwa written 6.6 years ago by Ying W3.9k • updated 3.1 years ago by Yaseen Ladak20
76
votes
3
answers
40k
views
29 follow
3
answers
Bedtools Compare Multiple Bed Files?
bedtools intersect written 7.1 years ago by Bioscientist1.6k • updated 5.9 years ago by sjneph600
30
votes
4
answers
23k
views
16 follow
4
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 5.8 years ago by user780 • updated 5 months ago by ATpoint10k
23
votes
2
answers
20k
views
11 follow
2
answers
Converting Gff To Bed With Bedtools?
bedtools bed gff conversion written 5.9 years ago by user780 • updated 5.9 years ago by Alex Reynolds26k
17
votes
4
answers
19k
views
12 follow
4
answers
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools written 5.6 years ago by komal.rathi3.3k • updated 9 weeks ago by Medhat8.0k
23
votes
1
answer
17k
views
5 follow
1
answer
How To Use Bedtools To Extract Promoters From A Mouse Bed File
bedtools bed extraction promoter fasta written 6.8 years ago by Anima Mundi2.4k • updated 6.8 years ago by Aaronquinlan10k
6
votes
6
answers
13k
views
8 follow
6
answers
How Can I Compare And Merge Bed Files
bedtools bed written 6.4 years ago by lyfsa30 • updated 5.6 years ago by beary.pooh10
31
votes
4
answers
13k
views
15 follow
4
answers
Getting Unmapped Reads: Comparing Fastq To Bam
bedtools fastq bam samtools written 7.0 years ago by User 9996790 • updated 7.0 years ago by brentp22k
17
votes
5
answers
12k
views
13 follow
5
answers
Discrepancy In Samtools Mpileup/Depth And Bedtools Genomecoveragebed Counts
bedtools samtools written 5.7 years ago by Surya Saha250 • updated 5.1 years ago by plafdesigns30
32
votes
6
answers
9.7k
views
14 follow
6
answers
Annotating Genomic Intervals
bedtools annotation bioconductor R written 6.2 years ago by Stephen2.6k • updated 6.2 years ago by Alex Reynolds26k
3
votes
4
answers
8.8k
views
5 follow
4
answers
Genomecoveragebed - Bedtool For Reporting Per Base Genome Coverage
bedtools coverage written 6.8 years ago by Varun Gupta1.1k • updated 4.9 years ago by hygine5550
18
votes
3
answers
8.4k
views
13 follow
3
answers
Heatmap Of Read Coverage Around Tsss
bedtools coverage heatmap written 5.3 years ago by A. Domingues1.7k • updated 5.2 years ago by Ying W3.9k
13
votes
3
answers
8.3k
views
3
answers
2
votes
1
answer
8.0k
views
1
answer
Coveragebed, Depth/Breadth Of Coverage
bedtools coverage written 7.5 years ago by Newbionf10 • updated 7.5 years ago by Istvan Albert ♦♦ 78k
17
votes
3
answers
7.4k
views
8 follow
3
answers
How To Extract Scores From Bedgraph File Using Bed Tools
bedtools written 5.9 years ago by biorepine1.4k • updated 5.3 years ago by Biostar ♦♦ 20
5
votes
1
answer
7.2k
views
1
answer
Intersectbed - Overlap Analysis Usign Vcf And Bed Files
bedtools written 6.4 years ago by Khader Shameer17k • updated 6.4 years ago by Sukhdeep Singh9.5k
32
votes
3
answers
7.1k
views
13 follow
3
answers
Picking Random Genomic Positions
perl bedtools bash written 6.4 years ago by PoGibas4.7k
15
votes
2
answers
7.0k
views
2
answers
17
votes
5
answers
7.0k
views
10 follow
5
answers
54
votes
10
answers
6.9k
views
9 follow
10
answers
Tool: Bedtools: Analyzing Genomic Features
bedtools tool written 6.6 years ago by Istvan Albert ♦♦ 78k • updated 3.9 years ago by Aaronquinlan10k
7
votes
3
answers
6.8k
views
5 follow
3
answers
Convert .Txt Into Bed Files
bedtools comparison written 7.4 years ago by Bioscientist1.6k • updated 7.4 years ago by Swbarnes21.4k
10
votes
2
answers
6.6k
views
5 follow
2
answers
How To Get Annotation For Bed File From Another Bed File
bedtools annotation written 6.0 years ago by k.nirmalraman970 • updated 4.0 years ago by Biostar ♦♦ 20
2
votes
3
answers
6.2k
views
3
answers
Raw Counts From Cufflinks Output
bedtools fpkm cufflinks counts written 5.8 years ago by Ge80 • updated 3.1 years ago by SmallChess460
6
votes
3
answers
6.2k
views
8 follow
3
answers
How To Install Bedtools In A User Directory
bedtools written 5.5 years ago by alittleboy210 • updated 4.7 years ago by paulr70
7
votes
2
answers
6.2k
views
2
answers
Can't convert paired end BAM to bed using bedtools
bedtools alignment bam written 3.4 years ago by colin.kern180 • updated 3.3 years ago by guillermofernandeznegrete0
21
votes
2
answers
6.1k
views
13 follow
2
answers
11
votes
3
answers
6.1k
views
5 follow
3
answers
Multi Thread Bedtools
bedtools parallel written 7.0 years ago by Nicolas Rosewick7.0k • updated 4.4 years ago by Biostar ♦♦ 20
7
votes
2
answers
6.1k
views
5 follow
2
answers
6
votes
3
answers
6.0k
views
3
answers
bedtools 2.0 merge - "unable to open file or unable to determine types"
bedtools written 4.2 years ago by Zev.Kronenberg11k • updated 3.3 years ago by trutane30
12
votes
3
answers
6.0k
views
3
answers
How to generate BedGraph from BedTools Coverage?
bedtools bed genomic written 3.2 years ago by SmallChess460 • updated 3.2 years ago by Alex Reynolds26k
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