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<prev • 499 results • page 1 of 17 • next >
110
votes
10
answers
50k
views
75 follow
10
answers
Tutorial: Piping With Samtools, Bwa And Bedtools
bedtools tutorial samtools unix bwa written 7.1 years ago by Ying W • 3.9k • updated 3.6 years ago by Yaseen Ladak • 20
81
votes
3
answers
44k
views
31 follow
3
answers
Bedtools Compare Multiple Bed Files?
bedtools intersect written 7.6 years ago by Bioscientist • 1.7k • updated 6.4 years ago by sjneph • 600
30
votes
4
answers
24k
views
16 follow
4
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 6.3 years ago by user • 790 • updated 11 months ago by ATpoint ♦ 18k
24
votes
2
answers
22k
views
11 follow
2
answers
Converting Gff To Bed With Bedtools?
bedtools bed gff conversion written 6.4 years ago by user • 790 • updated 6.4 years ago by Alex Reynolds ♦ 28k
25
votes
4
answers
21k
views
15 follow
4
answers
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools written 6.1 years ago by komal.rathi • 3.4k • updated 8 months ago by Medhat ♦ 8.3k
24
votes
1
answer
19k
views
6 follow
1
answer
How To Use Bedtools To Extract Promoters From A Mouse Bed File
bedtools bed extraction promoter fasta written 7.4 years ago by Anima Mundi • 2.4k • updated 7.4 years ago by Aaronquinlan ♦ 11k
7
votes
6
answers
15k
views
8 follow
6
answers
How Can I Compare And Merge Bed Files
bedtools bed written 6.9 years ago by lyfsa • 30 • updated 6.2 years ago by beary.pooh • 10
31
votes
4
answers
13k
views
15 follow
4
answers
Getting Unmapped Reads: Comparing Fastq To Bam
bedtools fastq bam samtools written 7.5 years ago by User 9996 • 800 • updated 7.5 years ago by brentp ♦ 23k
17
votes
5
answers
13k
views
13 follow
5
answers
Discrepancy In Samtools Mpileup/Depth And Bedtools Genomecoveragebed Counts
bedtools samtools written 6.2 years ago by Surya Saha • 260 • updated 5.6 years ago by plafdesigns • 30
34
votes
6
answers
10k
views
15 follow
6
answers
Annotating Genomic Intervals
bedtools annotation bioconductor R written 6.7 years ago by Stephen ♦ 2.7k • updated 6.7 years ago by Alex Reynolds ♦ 28k
13
votes
3
answers
9.3k
views
3
answers
Error: unable to open file or unable to determine types for file bed file
bedtools bed sequencing written 4.4 years ago by sebastianzeki0 • 170
3
votes
4
answers
9.1k
views
5 follow
4
answers
Genomecoveragebed - Bedtool For Reporting Per Base Genome Coverage
bedtools coverage written 7.3 years ago by Varun Gupta • 1.1k • updated 5.4 years ago by hygine555 • 0
18
votes
3
answers
9.1k
views
13 follow
3
answers
Heatmap Of Read Coverage Around Tsss
bedtools coverage heatmap written 5.8 years ago by A. Domingues • 2.1k • updated 5.8 years ago by Ying W • 3.9k
2
votes
1
answer
8.4k
views
1
answer
Coveragebed, Depth/Breadth Of Coverage
bedtools coverage written 8.0 years ago by Newbionf • 10 • updated 8.0 years ago by Istvan Albert ♦♦ 80k
20
votes
4
answers
7.9k
views
10 follow
4
answers
How To Extract Scores From Bedgraph File Using Bed Tools
bedtools written 6.4 years ago by biorepine • 1.4k • updated 3 months ago by brianpenghe • 20
32
votes
3
answers
7.7k
views
13 follow
3
answers
Picking Random Genomic Positions
perl bedtools bash written 6.9 years ago by PoGibas ♦ 4.8k
15
votes
2
answers
7.5k
views
2
answers
Reproduce Encode/Cshl Long Rna-Seq Data Visualization Viewed In Ucsc, But Failed? [Done]
bedtools encode visualization rna-seq written 6.7 years ago by Puriney • 330 • updated 6.7 years ago by Malachi Griffith ♦ 17k
5
votes
1
answer
7.4k
views
1
answer
Intersectbed - Overlap Analysis Usign Vcf And Bed Files
bedtools written 6.9 years ago by Khader Shameer ♦ 18k • updated 6.9 years ago by Sukhdeep Singh ♦ 9.8k
17
votes
5
answers
7.4k
views
10 follow
5
answers
What Is The Fastest Method To Determine The Number Of Positions In A Bam File With >N Coverage?
bedtools depth-of-coverage bam samtools coverage written 6.1 years ago by Malachi Griffith ♦ 17k • updated 7 months ago by Paul • 1.3k
54
votes
10
answers
7.3k
views
9 follow
10
answers
Tool: Bedtools: Analyzing Genomic Features
bedtools tool written 7.2 years ago by Istvan Albert ♦♦ 80k • updated 4.5 years ago by Aaronquinlan ♦ 11k
10
votes
2
answers
7.2k
views
5 follow
2
answers
How To Get Annotation For Bed File From Another Bed File
bedtools annotation written 6.6 years ago by k.nirmalraman • 980 • updated 4.6 years ago by Biostar ♦♦ 20
7
votes
3
answers
7.1k
views
5 follow
3
answers
Convert .Txt Into Bed Files
bedtools comparison written 7.9 years ago by Bioscientist • 1.7k • updated 7.9 years ago by Swbarnes2 • 1.5k
11
votes
3
answers
7.0k
views
5 follow
3
answers
Multi Thread Bedtools
bedtools parallel written 7.5 years ago by Nicolas Rosewick ♦ 7.7k • updated 4.9 years ago by Biostar ♦♦ 20
8
votes
2
answers
7.0k
views
2
answers
Can't convert paired end BAM to bed using bedtools
bedtools alignment bam written 4.0 years ago by colin.kern • 220 • updated 3.8 years ago by guillermofernandeznegrete • 0
12
votes
3
answers
7.0k
views
3
answers
How to generate BedGraph from BedTools Coverage?
bedtools bed genomic written 3.7 years ago by SmallChess • 480 • updated 3.7 years ago by Alex Reynolds ♦ 28k
6
votes
3
answers
6.8k
views
8 follow
3
answers
How To Install Bedtools In A User Directory
bedtools written 6.0 years ago by alittleboy • 210 • updated 5.2 years ago by paulr • 80
23
votes
2
answers
6.6k
views
16 follow
2
answers
How To Count Genes In Genomic Regions Using A Gtf/Gff3 And A Bed File Of Regions
bedtools gtf gff written 6.3 years ago by Nick Crawford • 210
0
votes
1
answer
6.6k
views
1
answer
bedtools merge, ERROR: file has non positional records, which are only valid for the groupBy tool.
bedtools written 2.6 years ago by bio315eskildsen • 0
9
votes
2
answers
6.5k
views
8 follow
2
answers
Calculating Exome Coverage
bedtools exome coverage bowtie2 written 5.2 years ago by Coryza • 30
8
votes
1
answer
6.5k
views
1
answer
BEDtools coverage output
bedtools alignment coverage written 3.4 years ago by novice • 920 • updated 3.4 years ago by Devon Ryan ♦ 90k
<prev • 499 results • page 1 of 17 • next >
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