Showing: bedtoolsreset
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112
votes
8
answers
51k
views
77 follow
8
answers
Tutorial: Piping With Samtools, Bwa And Bedtools
bedtools tutorial samtools unix bwa written 7.5 years ago by Ying W3.9k • updated 3.9 years ago by Yaseen Ladak20
54
votes
10
answers
7.5k
views
9 follow
10
answers
Tool: Bedtools: Analyzing Genomic Features
bedtools tool written 7.5 years ago by Istvan Albert ♦♦ 81k • updated 4.8 years ago by Aaronquinlan11k
14
votes
1
answer
1.9k
views
8 follow
1
answer
Tutorial: Introduction to bedtools.
bedtools tutorial written 4.9 years ago by Aaronquinlan11k • updated 2.9 years ago by mcc80
81
votes
3
answers
46k
views
31 follow
3
answers
Bedtools Compare Multiple Bed Files?
bedtools intersect written 8.0 years ago by Bioscientist1.7k • updated 6.7 years ago by sjneph600
35
votes
6
answers
11k
views
17 follow
6
answers
Annotating Genomic Intervals
bedtools annotation bioconductor R written 7.0 years ago by Stephen2.7k • updated 7.0 years ago by Alex Reynolds29k
32
votes
6
answers
25k
views
19 follow
6
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 6.7 years ago by user820 • updated 7 weeks ago by ATpoint24k
10
votes
0
answers
4.6k
views
0
answers
Tutorial: Plot average methylation levels across TSS region
bedtools R tutorial methylation rrbs written 4.7 years ago by TriS3.9k • updated 4.7 years ago by Gjain5.3k
32
votes
3
answers
8.0k
views
13 follow
3
answers
Picking Random Genomic Positions
perl bedtools bash written 7.3 years ago by PoGibas4.8k
23
votes
2
answers
6.9k
views
16 follow
2
answers
18
votes
3
answers
9.4k
views
13 follow
3
answers
Heatmap Of Read Coverage Around Tsss
bedtools coverage heatmap written 6.2 years ago by A. Domingues2.1k • updated 6.1 years ago by Ying W3.9k
31
votes
4
answers
14k
views
15 follow
4
answers
Getting Unmapped Reads: Comparing Fastq To Bam
bedtools fastq bam samtools written 7.9 years ago by User 9996800 • updated 7.9 years ago by brentp23k
28
votes
3
answers
5.9k
views
7 follow
3
answers
15
votes
2
answers
7.7k
views
2
answers
17
votes
5
answers
13k
views
13 follow
5
answers
Discrepancy In Samtools Mpileup/Depth And Bedtools Genomecoveragebed Counts
bedtools samtools written 6.6 years ago by Surya Saha260 • updated 6.0 years ago by plafdesigns30
25
votes
1
answer
20k
views
6 follow
1
answer
How To Use Bedtools To Extract Promoters From A Mouse Bed File
bedtools bed extraction promoter fasta written 7.7 years ago by Anima Mundi2.4k • updated 7.7 years ago by Aaronquinlan11k
12
votes
1
answer
2.9k
views
1
answer
How to find intron co-ordinates from the gff file?
bedtools gff open intron written 3.9 years ago by Chirag Parsania1.6k • updated 3.9 years ago by Devon Ryan92k
16
votes
1
answer
2.2k
views
1
answer
15
votes
1
answer
3.4k
views
1
answer
20
votes
3
answers
3.4k
views
7 follow
3
answers
How To Find The Nearest Gene To A Retrotransposon Insert?
bedtools bed position mouse written 7.5 years ago by Joseph Hughes2.7k • updated 7.5 years ago by Alex Reynolds29k
16
votes
2
answers
4.0k
views
6 follow
2
answers
Does Bedops Have A Command Similar To The Bedtools Makewindows?
bedtools written 6.7 years ago by Irsan7.0k • updated 4.8 years ago by Alex Reynolds29k
25
votes
4
answers
22k
views
15 follow
4
answers
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools written 6.5 years ago by komal.rathi3.4k • updated 12 months ago by Medhat8.5k
17
votes
5
answers
7.6k
views
10 follow
5
answers
14
votes
3
answers
3.3k
views
3
answers
10
votes
3
answers
3.3k
views
5 follow
3
answers
How To Explain Uneven Coverage Of A Dna Seqment Obtained Via Pcr Amplification.
bedtools coverage written 5.5 years ago by rohan100 • updated 5.3 years ago by swbarnes26.7k
22
votes
1
answer
4.0k
views
1
answer
calling bedtools from R
bedtools R written 4.6 years ago by yasjas70 • updated 4.6 years ago by Irsan7.0k
11
votes
2
answers
6.2k
views
2
answers
9
votes
2
answers
7.5k
views
2
answers
Can't convert paired end BAM to bed using bedtools
bedtools alignment bam written 4.3 years ago by colin.kern500 • updated 4.1 years ago by guillermofernandeznegrete0
4
votes
0
answers
1.5k
views
5 follow
0
answers
Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 24 months ago by jmzeng131490
5
votes
2
answers
6.1k
views
2
answers
Correlation Of Fpkm And Length Normalized Transcript Mapped Read Count
bedtools cufflinks next-gen written 7.2 years ago by johannes.helmuth110 • updated 13 months ago by Biostar ♦♦ 20
19
votes
3
answers
3.2k
views
5 follow
3
answers
What Is The Best Way To Run Bedtools In Parallel With Blocking
bedtools parallel written 6.8 years ago by Ying W3.9k • updated 6.8 years ago by Alex Reynolds29k
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