Showing: bedtoolsreset
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109
votes
10
answers
47k
views
75 follow
10
answers
Tutorial: Piping With Samtools, Bwa And Bedtools
bedtools tutorial samtools unix bwa written 6.8 years ago by Ying W3.9k • updated 3.3 years ago by Yaseen Ladak20
54
votes
10
answers
7.1k
views
9 follow
10
answers
Tool: Bedtools: Analyzing Genomic Features
bedtools tool written 6.8 years ago by Istvan Albert ♦♦ 79k • updated 4.1 years ago by Aaronquinlan10k
14
votes
1
answer
1.7k
views
8 follow
1
answer
Tutorial: Introduction to bedtools.
bedtools tutorial written 4.2 years ago by Aaronquinlan10k • updated 2.2 years ago by mcc80
76
votes
3
answers
42k
views
29 follow
3
answers
Bedtools Compare Multiple Bed Files?
bedtools intersect written 7.3 years ago by Bioscientist1.6k • updated 6.1 years ago by sjneph600
32
votes
3
answers
7.3k
views
13 follow
3
answers
Picking Random Genomic Positions
perl bedtools bash written 6.6 years ago by PoGibas4.7k
34
votes
6
answers
10.0k
views
14 follow
6
answers
Annotating Genomic Intervals
bedtools annotation bioconductor R written 6.4 years ago by Stephen2.7k • updated 6.4 years ago by Alex Reynolds27k
9
votes
0
answers
4.0k
views
0
answers
Tutorial: Plot average methylation levels across TSS region
bedtools R tutorial methylation rrbs written 4.0 years ago by TriS3.6k • updated 4.0 years ago by Gjain5.3k
30
votes
4
answers
23k
views
16 follow
4
answers
Converting Bam To Bedgraph For Viewing On Ucsc?
bedtools bed bam genome-browser ucsc written 6.0 years ago by user790 • updated 7 months ago by ATpoint13k
18
votes
3
answers
8.6k
views
13 follow
3
answers
Heatmap Of Read Coverage Around Tsss
bedtools coverage heatmap written 5.5 years ago by A. Domingues1.8k • updated 5.4 years ago by Ying W3.9k
31
votes
4
answers
13k
views
15 follow
4
answers
Getting Unmapped Reads: Comparing Fastq To Bam
bedtools fastq bam samtools written 7.2 years ago by User 9996800 • updated 7.2 years ago by brentp22k
28
votes
3
answers
5.6k
views
7 follow
3
answers
15
votes
2
answers
7.2k
views
2
answers
21
votes
2
answers
6.3k
views
13 follow
2
answers
17
votes
5
answers
12k
views
13 follow
5
answers
Discrepancy In Samtools Mpileup/Depth And Bedtools Genomecoveragebed Counts
bedtools samtools written 5.9 years ago by Surya Saha250 • updated 5.3 years ago by plafdesigns30
23
votes
1
answer
17k
views
5 follow
1
answer
How To Use Bedtools To Extract Promoters From A Mouse Bed File
bedtools bed extraction promoter fasta written 7.0 years ago by Anima Mundi2.4k • updated 7.0 years ago by Aaronquinlan10k
16
votes
1
answer
1.8k
views
1
answer
15
votes
1
answer
3.2k
views
1
answer
18
votes
3
answers
3.2k
views
6 follow
3
answers
How To Find The Nearest Gene To A Retrotransposon Insert?
bedtools bed position mouse written 6.9 years ago by Joseph Hughes2.7k • updated 6.9 years ago by Alex Reynolds27k
16
votes
2
answers
3.6k
views
6 follow
2
answers
Does Bedops Have A Command Similar To The Bedtools Makewindows?
bedtools written 6.1 years ago by Irsan6.8k • updated 4.1 years ago by Alex Reynolds27k
11
votes
1
answer
2.4k
views
1
answer
How to find intron co-ordinates from the gff file?
bedtools gff open intron written 3.3 years ago by Chirag Parsania1.3k • updated 3.3 years ago by Devon Ryan88k
19
votes
4
answers
19k
views
12 follow
4
answers
Bedtools Genomecoveragebed Usage : How To Create A Genome File?
bedtools written 5.8 years ago by komal.rathi3.4k • updated 4 months ago by Medhat8.1k
17
votes
5
answers
7.1k
views
10 follow
5
answers
14
votes
3
answers
3.0k
views
3
answers
10
votes
3
answers
3.1k
views
5 follow
3
answers
How To Explain Uneven Coverage Of A Dna Seqment Obtained Via Pcr Amplification.
bedtools coverage written 4.9 years ago by rohan100 • updated 4.7 years ago by swbarnes24.8k
22
votes
1
answer
3.6k
views
1
answer
calling bedtools from R
bedtools R written 3.9 years ago by yasjas70 • updated 3.9 years ago by Irsan6.8k
11
votes
2
answers
5.3k
views
2
answers
4
votes
0
answers
1.0k
views
5 follow
0
answers
Tutorial: bam2rpkm by bedtools
bedtools rpkm tutorial bam rna-seq written 15 months ago by jmzeng131490
5
votes
2
answers
5.7k
views
2
answers
19
votes
3
answers
2.9k
views
5 follow
3
answers
What Is The Best Way To Run Bedtools In Parallel With Blocking
bedtools parallel written 6.1 years ago by Ying W3.9k • updated 6.1 years ago by Alex Reynolds27k
23
votes
2
answers
21k
views
11 follow
2
answers
Converting Gff To Bed With Bedtools?
bedtools bed gff conversion written 6.1 years ago by user790 • updated 6.1 years ago by Alex Reynolds27k
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