best practices Posts

Latest

Open

RNA-Seq

ChIP-Seq

SNP

Assembly

Tutorials

Tools

Jobs

Forum

Planet

All »

Home

Welcome to Biostar! about • faq • rss

Community

Log In

Sign Up

Add New Post

Showing: best practices • reset

or Classic search

votes

answers

243

views

answers

addressing software versions

software error gatk best practices written 3 months ago by prasundutta87 • 170

votes

answers

322

views

answers

Determining the subjects to use after obtaining a PC plot of population substructure

gwas population stratification best practices written 10 months ago by Sheila • 220

votes

answer

1.3k

views

answer

Forum: What are your "model" examples for bioinformatics programming?

github coding forum rna-seq best practices written 2.8 years ago by Dan D ♦ 6.4k • updated 2.8 years ago by Pierre Lindenbaum ♦ 107k

Recent Votes

Recent Locations • All »

University of Macau, 1 minute ago
Japan, 2 minutes ago

Recent Awards • All »

Popular Question to grant.hovhannisyan • 780
Teacher to Devon Ryan ♦ 79k
Scholar to Devon Ryan ♦ 79k
Autobiographer to Ryan Swan • 0
Scholar to cpad0112 • 5.2k
Popular Question to mkaushal • 70

Recent Replies

C: Normalization amplicon data using mean depth and coverage by Kevin Blighe ♦ 19k
Working with the data should not be difficult, if not just a little unconventional. To help other...
C: Large data set visualisation by Kevin Blighe ♦ 19k
Can you give a sample of the data that you've got? What about CIRCOS? - here's a simple example s...
A: stringtie merged gtf doesn't give any gene expression columns by Kevin Blighe ♦ 19k
Please take a look at my previous answer here: https://www.biostars.org/p/292200/ Both my answer...
C: Example of processed RNASeq datasets by Kevin Blighe ♦ 19k
Well, perhaps we can do this here. In which cancer are you particularly interested? I am now plan...
C: How to get million target snps info(ie. chromosome, location) in a easy way? by xiaohuichen03 • 0
Hi, Thank you for your advice. When searching on a file of IDs, should the command line be $ grep...
C: Retrieving individual clusters from RNA-seq hierarchical clustering in R by Kevin Blighe ♦ 19k
Yes, that's generally the result of using Ward's linkage, but there's not exactly a right or wron...
C: Build a HISAT2 index of hg 19 by genomax ♦ 47k
At the index build step, unfortunately yes, since I don't think there is any way for the program ...
A: Build a HISAT2 index of hg 19 by mlemusfuentes • 0
you say that all working was lost?, delete those *.ht2 would be like starting over...
C: Bowtie2 align error by Bastien Hervé • 1.0k
If OP really have 128GB of RAM, he can align every genome he wants with bowtie2. It's a memory p...
A: getting a combination of all predicted genes by Alex Reynolds ♦ 23k
Union with `bedops -u` and perhaps filter the unioned set by overlap with `bedmap --range` or `be...
A: How to get million target snps info(ie. chromosome, location) in a easy way? by Alex Reynolds ♦ 23k
One way to do this is via the command line. You could download SNP annotations via `wget`. For ex...
C: RNA secondary structure - Feature extraction by cschu181 • 1.0k
Ok, please pull the code from github again. I have modified that you can run it on a bracket stri...

Content

Help

About
FAQ

Access

RSS
Stats
API

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Traffic: 954 users visited in the last hour