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<prev • 111 results • page 1 of 4 • next >
0
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1
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39
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1
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Size difference BigWig vs. BedGraph files
bigwigtobedgraph bigwig written 3 days ago by robbenstijn • 0 • updated 3 days ago by Pierre Lindenbaum ♦ 129k
2
votes
1
answer
56
views
1
answer
ucsc bigWigToBedGraph tool error
local galaxy bigwig ucsc written 5 days ago by robbenstijn • 0
2
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0
answers
60
views
0
answers
Galaxy - bigWigToBedGraph: command not found
bigwigtobedgraph galaxy bigwig written 7 days ago by robbenstijn • 0
1
vote
1
answer
163
views
1
answer
ATAC-seq coverage tracks using bamCoverage from Deeptools
deeptools bigwig atac-seq bamcoverage written 7 weeks ago by mickey_95 • 10
0
votes
0
answers
149
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0
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Intersection of bigwig and bed files
bed ucsc bigwig atac-seq peak calling written 10 weeks ago by palabari • 10
1
vote
1
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104
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1
answer
Retrieve coordinate for maximum value in a region using a bigwig file
peak bigwig summit written 12 weeks ago by am2622 • 0 • updated 12 weeks ago by Pierre Lindenbaum ♦ 129k
2
votes
2
answers
113
views
2
answers
Retrieving individual cells from scRNA-seq bigWig files?
scrna-seq bigwig single cell rna-seq written 3 months ago by txema.heredia • 0 • updated 3 months ago by geek_y ♦ 11k
0
votes
1
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149
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1
answer
Bigwig circular plot
plotting java bigwig tool javascript written 3 months ago by abedkurdi10 • 30 • updated 3 months ago by Pierre Lindenbaum ♦ 129k
2
votes
1
answer
289
views
1
answer
Average bigwig files (not sum)
chip-seq bigwig written 4 months ago by srhic • 0 • updated 4 months ago by ATpoint ♦ 36k
15
votes
1
answer
1.2k
views
1
answer
error while reading bigwig files in computeMatrix (deeptools)
deeptools bigwig coverage computematrix written 18 months ago by Lila M • 820 • updated 4 months ago by Biostar ♦♦ 20
10
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0
answers
495
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0
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ATAC-seq data and deepTools: Small detail with impact on output
atacseq deeptools readlength bigwig forum written 5 months ago by gable_works • 40 • updated 5 months ago by ATpoint ♦ 36k
3
votes
1
answer
594
views
1
answer
variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 22 months ago by m93 • 240 • updated 6 months ago by Biostar ♦♦ 20
5
votes
1
answer
321
views
1
answer
Whole-genome percentile values in bigWig files
chip-seq wiggle bigwig statistics written 7 months ago by rachel • 30 • updated 7 months ago by Alex Reynolds ♦ 30k
2
votes
1
answer
923
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1
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Count matrix from bigwig files - Application
seq gene expression bigwig python written 10 months ago by pyKey • 50
1
vote
1
answer
334
views
1
answer
Calculating effective coverage/callable genome for variant calling from a bam file
genome variant-calling bam bigwig coverage written 12 months ago by Rubal • 330 • updated 12 months ago by Pierre Lindenbaum ♦ 129k
2
votes
0
answers
1.6k
views
0
answers
plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 3.1 years ago by ildem • 50 • updated 12 months ago by Biostar ♦♦ 20
0
votes
0
answers
298
views
0
answers
keep chromosome names in a bigwig file
rtracklayer bigwig import.bw written 13 months ago by Assa Yeroslaviz • 1.3k
19
votes
3
answers
26k
views
10 follow
3
answers
Any Method Of Converting Bigwig File Format Into Bed Format?
bed bigwig written 7.2 years ago by samwise.techno • 40 • updated 13 months ago by Samir • 180
0
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0
answers
292
views
0
answers
Overlapping Bedgraph - Microarray ChIP to BigWig for Clustering analysis
bedgraph chip bigwig microarray heatmap written 13 months ago by Hushus • 20
6
votes
1
answer
617
views
1
answer
How to tell if a BigWig file is 1-based or 0-based?
bigwig coordinate systems written 13 months ago by i.sudbery ♦ 8.3k • updated 13 months ago by Alex Reynolds ♦ 30k
0
votes
0
answers
288
views
0
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Loading bigiwg into an an array in javascript?
bigwig javascript written 14 months ago by endrebak • 830
6
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3
answers
553
views
3
answers
How to zoom out to whole genome view in UCSC browser?
ucsc bigwig browser written 16 months ago by msimmer92 • 250
0
votes
0
answers
753
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0
answers
MACS2: Missing Peaks in Bed file but Present in Bedgraph/Bigwig?
bed macs2 chip-seq bigwig allele-specific written 15 months ago by Ankit • 140
16
votes
1
answer
15k
views
6 follow
1
answer
Converstion of BED with scores into bigWig
bed bigwig conversion scores written 5.1 years ago by Leszek ♦ 4.0k • updated 15 months ago by msimmer92 • 250
3
votes
1
answer
1.4k
views
1
answer
converting Bed to Wig
overlap bed wig bigwig rtracklayer written 15 months ago by rahel14350 • 30 • updated 15 months ago by Alex Reynolds ♦ 30k
1
vote
1
answer
1.2k
views
1
answer
Problems when exporting GRanges file as bigwig after hg38 to hg19 lift over using rtracklayer and annotation hub
R lift over bigwig granges rtracklayer written 15 months ago by camerond • 150 • updated 15 months ago by benformatics • 1.7k
15
votes
3
answers
13k
views
13 follow
3
answers
Normalized Bigwig Files
bigwig written 7.4 years ago by vj • 440 • updated 16 months ago by sztankatt • 0
2
votes
2
answers
900
views
2
answers
a webserver for the bigwig files
bigwig written 17 months ago by Bogdan • 1000
0
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0
answers
471
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0
answers
Count matrix showing different results than UCSC tracks
mm10 featurecounts bigwig bam ucsc written 17 months ago by compuTE • 50
6
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1
answer
3.4k
views
5 follow
1
answer
From BAM to BAI to BIGWIG
bigwig index samtools bai bamcoverage written 17 months ago by compuTE • 50 • updated 17 months ago by h.mon ♦ 30k
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