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<prev • 79 results • page 1 of 3 • next >
3
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1
answer
95
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1
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variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 11 days ago by m93 • 90 • updated 9 days ago by RamRS ♦ 17k
1
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0
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79
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0
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Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 14 days ago by m93 • 90
3
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1
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164
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1
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Output bedGraph from genomeCoverageBed is missing "chr"
bedgraph bigwig genomecoveragebed rna-seq ucsc written 15 days ago by m93 • 90 • updated 14 days ago by RamRS ♦ 17k
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0
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106
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0
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bwtool stalled liftover
bigwig liftover bwtool written 27 days ago by rbronste • 170
7
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3
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164
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3
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Normalising RNA-seq samples from bam files for UCSC Genome browser visualization
bam bigwig rna-seq ucsc written 5 weeks ago by m93 • 90 • updated 4 weeks ago by Ian ♦ 5.2k
3
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1
answer
128
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1
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Different bigwig file sizes between BedgraphToBigwig and bamCoverage
bamcoverage ucsc bigwig deeptools bedgraphtobigwig written 5 weeks ago by m93 • 90
1
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1
answer
88
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1
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Is possible to quantify the RNAPOLII levels on all the annotated genes using biwgiw files?
annotation rnapol quantification bigwig written 5 weeks ago by Lila M • 390 • updated 5 weeks ago by venu ♦ 5.6k
13
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1
answer
1.9k
views
1
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Tool: Command-Line Software For Bigwig Data
bigwig tool written 4.9 years ago by andypohl • 90 • updated 8 weeks ago by Shicheng Guo • 6.5k
0
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0
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144
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0
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Is there are any Python library for read bigWig file on Windows?
python windows bigwig written 9 weeks ago by flipflappers • 0
13
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2
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9.3k
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12 follow
2
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Normalized Bigwig Files
bigwig written 5.5 years ago by vj • 360 • updated 11 weeks ago by ATpoint ♦ 7.6k
4
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2
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200
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5 follow
2
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BigWig from ensembl assembly to UCSC session
ensembl bigwig ucsc written 3 months ago by Dataminer • 2.5k • updated 3 months ago by Devon Ryan ♦ 84k
0
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0
answers
243
views
0
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visualizing the file with BigWig format
visualize bigwig rna-seq ucsc written 4 months ago by lkianmehr • 10
1
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1
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291
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1
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How to extrach gene names and peaks from BedGraph or BigWig files
peak bedgraph chip-seq bigwig written 5 months ago by hkarakurt • 30 • updated 5 months ago by Devon Ryan ♦ 84k
1
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0
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233
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0
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Bam to BigWig loss of data at MACS peaks (nothing in the BigWig why?)
chip-seq peaks bigwig bam written 5 months ago by contreras.xavier • 0 • updated 5 months ago by genomax ♦ 56k
2
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1
answer
387
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1
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How to create bigwig using mm10.fasta and mm10.fasta bowtie index files
mouse wig bigwig hmmcopy written 7 months ago by bioinforesearchquestions • 160 • updated 7 months ago by ATpoint ♦ 7.6k
4
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4
answers
551
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8 follow
4
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Saving IGV images for bigwig files
bigwig igv written 7 months ago by Varun Gupta • 1.0k • updated 7 months ago by dariober ♦ 9.4k
2
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1
answer
1.2k
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1
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BigWig file of strand-specific RNA-seq data
dutp bigwig strand-specific rna-seq written 10 months ago by yuabrahamliu • 30 • updated 10 months ago by Devon Ryan ♦ 84k
4
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4
answers
577
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5 follow
4
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bigWig to bed for regions above/below threshold
bed bigwig written 10 months ago by skanterakis • 80 • updated 10 months ago by Devon Ryan ♦ 84k
1
vote
1
answer
629
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1
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How can I merge regions of bigWig files?
bigwig written 11 months ago by romgrk.cc • 0 • updated 11 months ago by Alex Reynolds ♦ 25k
0
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0
answers
550
views
0
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how to calculate with metadata of GRanges Objects
rtracklayer macs2 bigwig granges genomicranges written 13 months ago by Assa Yeroslaviz • 1.1k
1
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0
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593
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0
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plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 14 months ago by ildem • 20
3
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1
answer
610
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1
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Generate bed file containing regions with no bigwig coverage
bed bigwig written 17 months ago by mmmmcandrew • 60 • updated 17 months ago by Pierre Lindenbaum ♦ 112k
0
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0
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734
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0
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Creating coverage files containing paired-end fragments of particular sizes
bed paired-end wig bigwig bam written 17 months ago by mmmmcandrew • 60
4
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2
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516
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2
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Finding minima from bigwig in specific regions from bed file
bed bigwig written 18 months ago by mmmmcandrew • 60 • updated 18 months ago by Alex Reynolds ♦ 25k
6
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1
answer
582
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1
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Where is the BigWig Supplementary Information?
bigwig written 19 months ago by John ♦ 12k • updated 19 months ago by h.mon ♦ 19k
9
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1
answer
4.3k
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5 follow
1
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BAM to BIGWIG
bioinformatics github bam bigwig terminal written 19 months ago by robbenstijn • 0 • updated 19 months ago by EagleEye ♦ 5.7k
0
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0
answers
691
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0
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IGV idxsession files with bigwig URLs
bigwig igv written 20 months ago by 14134125465346445 • 3.4k
5
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2
answers
867
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2
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DataFormat: Methylation : qmap bis-seq format To bigwig/wig/bedgraph
qmap bigwig written 23 months ago by Shicheng Guo • 6.5k
3
votes
1
answer
558
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1
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How to hide UCSC tracks in bigwig setting
bigwig setting hide ucsc written 21 months ago by Shicheng Guo • 6.5k • updated 21 months ago by genecats.ucsc • 560
5
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1
answer
1.9k
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1
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smoothing or binning bigWig file
bigwig written 21 months ago by igor ♦ 6.6k • updated 21 months ago by Alex Reynolds ♦ 25k
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