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4
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111
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5 follow
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Tutorial: Normalization of BigWig files using TMM from edgeR
deeptools tutorial bigwig edger tmm written 8 days ago by ATpoint ♦ 21k
1
vote
1
answer
88
views
1
answer
Calculating effective coverage/callable genome for variant calling from a bam file
genome variant-calling bam bigwig coverage written 23 days ago by Rubal • 240 • updated 23 days ago by Pierre Lindenbaum ♦ 122k
2
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0
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1.0k
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plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 2.1 years ago by ildem • 50 • updated 4 weeks ago by Biostar ♦♦ 20
0
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0
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97
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keep chromosome names in a bigwig file
rtracklayer bigwig import.bw written 6 weeks ago by Assa Yeroslaviz • 1.2k
18
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3
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21k
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10 follow
3
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Any Method Of Converting Bigwig File Format Into Bed Format?
bed bigwig written 6.3 years ago by samwise.techno • 30 • updated 8 weeks ago by Samir • 170
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97
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Overlapping Bedgraph - Microarray ChIP to BigWig for Clustering analysis
bedgraph chip bigwig microarray heatmap written 8 weeks ago by Hushus • 20
3
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1
answer
162
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1
answer
How to tell if a BigWig file is 1-based or 0-based?
bigwig coordinate systems written 10 weeks ago by i.sudbery ♦ 5.2k • updated 8 weeks ago by Alex Reynolds ♦ 28k
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127
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Loading bigiwg into an an array in javascript?
bigwig javascript written 11 weeks ago by endrebak • 780
6
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3
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232
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3
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How to zoom out to whole genome view in UCSC browser?
ucsc bigwig browser written 5 months ago by msimmer92 • 200
0
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337
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0
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MACS2: Missing Peaks in Bed file but Present in Bedgraph/Bigwig?
bed macs2 chip-seq bigwig allele-specific written 3 months ago by Ankit • 110
13
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1
answer
11k
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5 follow
1
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Converstion of BED with scores into bigWig
bed bigwig conversion scores written 4.1 years ago by Leszek ♦ 4.0k • updated 3 months ago by msimmer92 • 200
3
votes
1
answer
249
views
1
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converting Bed to Wig
overlap bed wig bigwig rtracklayer written 3 months ago by rahel14350 • 30 • updated 3 months ago by Alex Reynolds ♦ 28k
1
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1
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334
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1
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Problems when exporting GRanges file as bigwig after hg38 to hg19 lift over using rtracklayer and annotation hub
R lift over bigwig granges rtracklayer written 4 months ago by camerond • 70 • updated 4 months ago by benformatics • 1.1k
15
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3
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11k
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13 follow
3
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Normalized Bigwig Files
bigwig written 6.4 years ago by vj • 410 • updated 4 months ago by sztankatt • 0
2
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2
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347
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2
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a webserver for the bigwig files
bigwig written 6 months ago by Bogdan • 850
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274
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0
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Count matrix showing different results than UCSC tracks
mm10 featurecounts bigwig bam ucsc written 6 months ago by raquelgarza95 • 40
5
votes
1
answer
860
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1
answer
From BAM to BAI to BIGWIG
bigwig index samtools bai bamcoverage written 6 months ago by raquelgarza95 • 40 • updated 6 months ago by h.mon ♦ 27k
11
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3
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3.1k
views
8 follow
3
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smoothing or binning bigWig file
bigwig written 2.7 years ago by igor ♦ 8.1k • updated 6 months ago by keller.mckowen • 10
5
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1
answer
441
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1
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Per-base coverage to bedgraph or bigwig
bedtools bigwig bam coverage written 6 months ago by pyKey • 40
15
votes
1
answer
429
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1
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error while reading bigwig files in computeMatrix (deeptools)
deeptools bigwig coverage computematrix written 7 months ago by Lila M • 790 • updated 6 months ago by Devon Ryan ♦ 91k
6
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1
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7.9k
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1
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bigwig to peak
peak chip-seq bigwig written 5.1 years ago by Nicolas Rosewick ♦ 8.0k • updated 7 months ago by liruiradiant • 10
13
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3
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3.2k
views
3
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How to extract bigWig signal for a given bed file?
bigwig written 2.9 years ago by Bioradical • 50 • updated 7 months ago by chechu086 • 0
3
votes
1
answer
482
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1
answer
How to create BigWig files with normalised signal using ChIP-seq and Input?
chip-seq bigwig written 7 months ago by biostart • 300 • updated 7 months ago by Devon Ryan ♦ 91k
2
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1
answer
718
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1
answer
Bigwig format and operation
bigwig chip-seq atac-seq written 8 months ago by oriolebaltimore • 110
4
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4
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1.3k
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6 follow
4
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bigWig to bed for regions above/below threshold
bed bigwig written 21 months ago by skanterakis • 100 • updated 8 months ago by oriolebaltimore • 110
4
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1
answer
353
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1
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Error when running Ensembl VEP: "bigWigToWig does not seem to be in your path"
ensembl ngs vep snp bigwig written 10 months ago by claudiadast • 0 • updated 9 months ago by Biostar ♦♦ 20
0
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0
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268
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0
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How to generate bigwig file from paired end reads that overlap
paired-end clip bigwig rna-seq small rnas written 9 months ago by racrna • 0
1
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0
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424
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0
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Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 11 months ago by m93 • 170 • updated 9 months ago by Biostar ♦♦ 20
0
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0
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1.1k
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0
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Rtracklayer: Converting rlelist (Coverage) to bigwig
rtracklayer bigwig coverage written 2.9 years ago by datascientist28 • 390 • updated 9 months ago by Biostar ♦♦ 20
7
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3
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1.7k
views
3
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BigWig library for Java
bedgraph java bigwig written 4.8 years ago by bow • 790 • updated 10 months ago by holgerbrandl • 30
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