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visualizing the file with BigWig format
visualize bigwig rna-seq ucsc written 4 weeks ago by lkianmehr • 0
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How to extrach gene names and peaks from BedGraph or BigWig files
peak bedgraph chip-seq bigwig written 8 weeks ago by hkarakurt • 20 • updated 8 weeks ago by Devon Ryan ♦ 80k
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Bam to BigWig loss of data at MACS peaks (nothing in the BigWig why?)
chip-seq peaks bigwig bam written 10 weeks ago by contreras.xavier • 0 • updated 10 weeks ago by genomax ♦ 49k
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How to create bigwig using mm10.fasta and mm10.fasta bowtie index files
mouse wig bigwig hmmcopy written 4 months ago by bioinforesearchquestions • 140 • updated 4 months ago by ATpoint • 4.4k
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Saving IGV images for bigwig files
bigwig igv written 4 months ago by Varun Gupta • 1000 • updated 4 months ago by dariober ♦ 9.2k
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BigWig file of strand-specific RNA-seq data
dutp bigwig strand-specific rna-seq written 7 months ago by yuabrahamliu • 30 • updated 7 months ago by Devon Ryan ♦ 80k
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5 follow
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bigWig to bed for regions above/below threshold
bed bigwig written 7 months ago by skanterakis • 80 • updated 7 months ago by Devon Ryan ♦ 80k
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How can I merge regions of bigWig files?
bigwig written 8 months ago by romgrk.cc • 0 • updated 8 months ago by Alex Reynolds ♦ 24k
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how to calculate with metadata of GRanges Objects
rtracklayer macs2 bigwig granges genomicranges written 10 months ago by Assa Yeroslaviz • 1.1k
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plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 11 months ago by ildem • 20
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Generate bed file containing regions with no bigwig coverage
bed bigwig written 14 months ago by mmmmcandrew • 60 • updated 14 months ago by Pierre Lindenbaum ♦ 108k
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Creating coverage files containing paired-end fragments of particular sizes
bed paired-end wig bigwig bam written 14 months ago by mmmmcandrew • 60
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Finding minima from bigwig in specific regions from bed file
bed bigwig written 14 months ago by mmmmcandrew • 60 • updated 14 months ago by Alex Reynolds ♦ 24k
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Where is the BigWig Supplementary Information?
bigwig written 16 months ago by John ♦ 12k • updated 16 months ago by h.mon ♦ 15k
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5 follow
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BAM to BIGWIG
bioinformatics github bam bigwig terminal written 16 months ago by robbenstijn • 0 • updated 16 months ago by EagleEye • 5.3k
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IGV idxsession files with bigwig URLs
bigwig igv written 17 months ago by 14134125465346445 • 3.4k
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DataFormat: Methylation : qmap bis-seq format To bigwig/wig/bedgraph
qmap bigwig written 19 months ago by Shicheng Guo • 4.9k
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How to hide UCSC tracks in bigwig setting
bigwig setting hide ucsc written 18 months ago by Shicheng Guo • 4.9k • updated 18 months ago by genecats.ucsc • 500
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smoothing or binning bigWig file
bigwig written 18 months ago by igor ♦ 6.2k • updated 18 months ago by Alex Reynolds ♦ 24k
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Calculating nucleosome dyad densities
dyad density mnase-seq bam bigwig coverage written 19 months ago by mmmmcandrew • 60
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How to extract bigWig signal for a given bed file?
bigwig written 20 months ago by Bioradical • 50 • updated 20 months ago by dariober ♦ 9.2k
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Rtracklayer: Converting rlelist (Coverage) to bigwig
rtracklayer bigwig coverage written 20 months ago by datascientist28 • 330
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How to visualize read depth based on genomic location
bed tophat bigwig rna-seq written 21 months ago by Whoknows • 640
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merging two bigwig files
deeptools merge chip-seq bigwig written 22 months ago by DataFanatic • 100 • updated 22 months ago by Devon Ryan ♦ 80k
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genome browser custom track bigwig upload problem with localhost
bigwig customtrack genomebrowser written 2.1 years ago by Mamta • 410
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Problem viewing a bigWig file on UCSC browser - any debugging solutions?
bigwig ucsc written 2.1 years ago by Ian ♦ 5.2k
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quantify signal in a chromosomal interval in different .bw files
chip-seq bw bigwig written 2.2 years ago by nibhelim • 0 • updated 2.2 years ago by Ming Tang • 2.3k
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bigwig file in UCSC custom track
ucsc bigwig rna-seq sequencing written 2.2 years ago by abc • 30 • updated 2.2 years ago by Sukhdeep Singh ♦ 9.3k
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Bigwig To Wig Convertion In Windows Os
windows bigwig conversion ucsc written 5.4 years ago by miklikd • 10 • updated 2.2 years ago by Biostar ♦♦ 20
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Forum: Bad Exprience on bigwig Format Visualization in UCSC
ftp forum bigwig ucsc written 2.2 years ago by Shicheng Guo • 4.9k • updated 2.2 years ago by Chris Miller ♦ 19k
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