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<prev • 83 results • page 1 of 3 • next >
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How to generate bigwig file from paired end reads that overlap
paired-end clip bigwig rna-seq small rnas written 5 days ago by racrna • 0
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156
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Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 9 weeks ago by m93 • 100 • updated 8 days ago by Biostar ♦♦ 20
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Rtracklayer: Converting rlelist (Coverage) to bigwig
rtracklayer bigwig coverage written 2.1 years ago by datascientist28 • 350 • updated 13 days ago by Biostar ♦♦ 20
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3
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BigWig library for Java
bedgraph java bigwig written 4.0 years ago by bow • 780 • updated 19 days ago by holgerbrandl • 30
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Heatmap using publicly available Chip-Seq data
bigbed chip-seq bigwig blueprint heatmap written 29 days ago by bk11 • 30
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138
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Error when running Ensembl VEP: "bigWigToWig does not seem to be in your path"
ensembl ngs vep snp bigwig written 4 weeks ago by claudiadast • 0
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106
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Testing bigWig file integrity
bigwig integrity written 6 weeks ago by Alex Reynolds ♦ 26k • updated 6 weeks ago by Devon Ryan ♦ 86k
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1
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144
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1
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variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 8 weeks ago by m93 • 100 • updated 8 weeks ago by RamRS ♦ 19k
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1
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Output bedGraph from genomeCoverageBed is missing "chr"
bedgraph bigwig genomecoveragebed rna-seq ucsc written 9 weeks ago by m93 • 100 • updated 9 weeks ago by RamRS ♦ 19k
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bwtool stalled liftover
bigwig liftover bwtool written 11 weeks ago by rbronste • 200
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Normalising RNA-seq samples from bam files for UCSC Genome browser visualization
bam bigwig rna-seq ucsc written 12 weeks ago by m93 • 100 • updated 11 weeks ago by Ian ♦ 5.3k
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1
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197
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1
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Different bigwig file sizes between BedgraphToBigwig and bamCoverage
bamcoverage ucsc bigwig deeptools bedgraphtobigwig written 12 weeks ago by m93 • 100
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Is possible to quantify the RNAPOLII levels on all the annotated genes using biwgiw files?
annotation rnapol quantification bigwig written 12 weeks ago by Lila M • 390 • updated 12 weeks ago by venu ♦ 5.6k
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Tool: Command-Line Software For Bigwig Data
bigwig tool written 5.0 years ago by andypohl • 90 • updated 3 months ago by Shicheng Guo • 7.0k
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Is there are any Python library for read bigWig file on Windows?
python windows bigwig written 3 months ago by flipflappers • 0
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12 follow
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Normalized Bigwig Files
bigwig written 5.7 years ago by vj • 380 • updated 4 months ago by ATpoint ♦ 9.2k
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239
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5 follow
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BigWig from ensembl assembly to UCSC session
ensembl bigwig ucsc written 4 months ago by Dataminer • 2.5k • updated 4 months ago by Devon Ryan ♦ 86k
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visualizing the file with BigWig format
visualize bigwig rna-seq ucsc written 5 months ago by lkianmehr • 30
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How to extrach gene names and peaks from BedGraph or BigWig files
peak bedgraph chip-seq bigwig written 6 months ago by hkarakurt • 30 • updated 6 months ago by Devon Ryan ♦ 86k
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Bam to BigWig loss of data at MACS peaks (nothing in the BigWig why?)
chip-seq peaks bigwig bam written 7 months ago by contreras.xavier • 0 • updated 7 months ago by genomax ♦ 58k
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How to create bigwig using mm10.fasta and mm10.fasta bowtie index files
mouse wig bigwig hmmcopy written 8 months ago by bioinforesearchquestions • 180 • updated 8 months ago by ATpoint ♦ 9.2k
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8 follow
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Saving IGV images for bigwig files
bigwig igv written 9 months ago by Varun Gupta • 1.0k • updated 9 months ago by dariober ♦ 9.7k
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1
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1
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BigWig file of strand-specific RNA-seq data
dutp bigwig strand-specific rna-seq written 12 months ago by yuabrahamliu • 40 • updated 12 months ago by Devon Ryan ♦ 86k
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5 follow
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bigWig to bed for regions above/below threshold
bed bigwig written 12 months ago by skanterakis • 80 • updated 12 months ago by Devon Ryan ♦ 86k
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1
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726
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How can I merge regions of bigWig files?
bigwig written 13 months ago by romgrk.cc • 0 • updated 13 months ago by Alex Reynolds ♦ 26k
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how to calculate with metadata of GRanges Objects
rtracklayer macs2 bigwig granges genomicranges written 14 months ago by Assa Yeroslaviz • 1.1k
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plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 16 months ago by ildem • 20
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647
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1
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Generate bed file containing regions with no bigwig coverage
bed bigwig written 19 months ago by mmmmcandrew • 60 • updated 19 months ago by Pierre Lindenbaum ♦ 114k
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Creating coverage files containing paired-end fragments of particular sizes
bed paired-end wig bigwig bam written 19 months ago by mmmmcandrew • 60
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Finding minima from bigwig in specific regions from bed file
bed bigwig written 19 months ago by mmmmcandrew • 60 • updated 19 months ago by Alex Reynolds ♦ 26k
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