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<prev • 100 results • page 1 of 4 • next >
2
votes
1
answer
200
views
1
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Count matrix from bigwig files - Application
seq gene expression bigwig python written 5 weeks ago by pyKey • 50
1
vote
1
answer
179
views
1
answer
Calculating effective coverage/callable genome for variant calling from a bam file
genome variant-calling bam bigwig coverage written 3 months ago by Rubal • 250 • updated 3 months ago by Pierre Lindenbaum ♦ 124k
2
votes
0
answers
1.1k
views
0
answers
plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 2.3 years ago by ildem • 50 • updated 3 months ago by Biostar ♦♦ 20
0
votes
0
answers
142
views
0
answers
keep chromosome names in a bigwig file
rtracklayer bigwig import.bw written 4 months ago by Assa Yeroslaviz • 1.2k
18
votes
3
answers
23k
views
10 follow
3
answers
Any Method Of Converting Bigwig File Format Into Bed Format?
bed bigwig written 6.5 years ago by samwise.techno • 30 • updated 4 months ago by Samir • 180
0
votes
0
answers
158
views
0
answers
Overlapping Bedgraph - Microarray ChIP to BigWig for Clustering analysis
bedgraph chip bigwig microarray heatmap written 4 months ago by Hushus • 20
3
votes
1
answer
226
views
1
answer
How to tell if a BigWig file is 1-based or 0-based?
bigwig coordinate systems written 5 months ago by i.sudbery ♦ 6.2k • updated 4 months ago by Alex Reynolds ♦ 29k
0
votes
0
answers
177
views
0
answers
Loading bigiwg into an an array in javascript?
bigwig javascript written 5 months ago by endrebak • 790
6
votes
3
answers
316
views
3
answers
How to zoom out to whole genome view in UCSC browser?
ucsc bigwig browser written 7 months ago by msimmer92 • 210
0
votes
0
answers
425
views
0
answers
MACS2: Missing Peaks in Bed file but Present in Bedgraph/Bigwig?
bed macs2 chip-seq bigwig allele-specific written 6 months ago by Ankit • 120
13
votes
1
answer
12k
views
5 follow
1
answer
Converstion of BED with scores into bigWig
bed bigwig conversion scores written 4.4 years ago by Leszek ♦ 4.0k • updated 6 months ago by msimmer92 • 210
3
votes
1
answer
422
views
1
answer
converting Bed to Wig
overlap bed wig bigwig rtracklayer written 6 months ago by rahel14350 • 30 • updated 6 months ago by Alex Reynolds ♦ 29k
1
vote
1
answer
530
views
1
answer
Problems when exporting GRanges file as bigwig after hg38 to hg19 lift over using rtracklayer and annotation hub
R lift over bigwig granges rtracklayer written 7 months ago by camerond • 100 • updated 7 months ago by benformatics • 1.2k
15
votes
3
answers
12k
views
13 follow
3
answers
Normalized Bigwig Files
bigwig written 6.7 years ago by vj • 410 • updated 7 months ago by sztankatt • 0
2
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2
answers
458
views
2
answers
a webserver for the bigwig files
bigwig written 8 months ago by Bogdan • 880
0
votes
0
answers
324
views
0
answers
Count matrix showing different results than UCSC tracks
mm10 featurecounts bigwig bam ucsc written 8 months ago by raquelgarza95 • 40
5
votes
1
answer
1.5k
views
1
answer
From BAM to BAI to BIGWIG
bigwig index samtools bai bamcoverage written 8 months ago by raquelgarza95 • 40 • updated 8 months ago by h.mon ♦ 28k
11
votes
2
answers
3.5k
views
8 follow
2
answers
smoothing or binning bigWig file
bigwig written 2.9 years ago by igor ♦ 8.8k • updated 9 months ago by keller.mckowen • 10
5
votes
1
answer
573
views
1
answer
Per-base coverage to bedgraph or bigwig
bedtools bigwig bam coverage written 9 months ago by pyKey • 50
15
votes
1
answer
585
views
1
answer
error while reading bigwig files in computeMatrix (deeptools)
deeptools bigwig coverage computematrix written 9 months ago by Lila M • 800 • updated 9 months ago by Devon Ryan ♦ 92k
6
votes
1
answer
9.1k
views
1
answer
bigwig to peak
peak chip-seq bigwig written 5.3 years ago by Nicolas Rosewick ♦ 8.3k • updated 9 months ago by liruiradiant • 10
13
votes
3
answers
3.5k
views
3
answers
How to extract bigWig signal for a given bed file?
bigwig written 3.1 years ago by Bioradical • 50 • updated 10 months ago by chechu086 • 0
3
votes
1
answer
593
views
1
answer
How to create BigWig files with normalised signal using ChIP-seq and Input?
chip-seq bigwig written 10 months ago by biostart • 310 • updated 10 months ago by Devon Ryan ♦ 92k
2
votes
1
answer
982
views
1
answer
Bigwig format and operation
bigwig chip-seq atac-seq written 11 months ago by oriolebaltimore • 130
4
votes
4
answers
1.8k
views
6 follow
4
answers
bigWig to bed for regions above/below threshold
bed bigwig written 2.0 years ago by skanterakis • 110 • updated 11 months ago by oriolebaltimore • 130
4
votes
1
answer
394
views
1
answer
Error when running Ensembl VEP: "bigWigToWig does not seem to be in your path"
ensembl ngs vep snp bigwig written 13 months ago by claudiadast • 0 • updated 11 months ago by Biostar ♦♦ 20
0
votes
0
answers
345
views
0
answers
How to generate bigwig file from paired end reads that overlap
paired-end clip bigwig rna-seq small rnas written 12 months ago by racrna • 0
1
vote
0
answers
533
views
0
answers
Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 14 months ago by m93 • 170 • updated 12 months ago by Biostar ♦♦ 20
1
vote
0
answers
1.1k
views
0
answers
Rtracklayer: Converting rlelist (Coverage) to bigwig
rtracklayer bigwig coverage written 3.1 years ago by datascientist28 • 410 • updated 12 months ago by Biostar ♦♦ 20
7
votes
3
answers
1.8k
views
3
answers
BigWig library for Java
bedgraph java bigwig written 5.0 years ago by bow • 790 • updated 12 months ago by holgerbrandl • 30
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