Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Showing selected topics • reset
or   Classic search
<prev • 103 results • page 1 of 4 • next >
2
votes
1
answer
37
views
1
answer
Average bigwig files (not sum)
chip-seq bigwig written 18 hours ago by srhic • 0 • updated 17 hours ago by ATpoint ♦ 32k
15
votes
1
answer
860
views
1
answer
error while reading bigwig files in computeMatrix (deeptools)
deeptools bigwig coverage computematrix written 14 months ago by Lila M • 810 • updated 9 days ago by Biostar ♦♦ 20
10
votes
0
answers
203
views
0
answers
ATAC-seq data and deepTools: Small detail with impact on output
atacseq deeptools readlength bigwig forum written 6 weeks ago by gable_works • 40 • updated 6 weeks ago by ATpoint ♦ 32k
3
votes
1
answer
511
views
1
answer
variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 18 months ago by m93 • 200 • updated 8 weeks ago by Biostar ♦♦ 20
5
votes
1
answer
263
views
1
answer
Whole-genome percentile values in bigWig files
chip-seq wiggle bigwig statistics written 3 months ago by rachel • 30 • updated 3 months ago by Alex Reynolds ♦ 29k
2
votes
1
answer
525
views
1
answer
Count matrix from bigwig files - Application
seq gene expression bigwig python written 5 months ago by pyKey • 50
1
vote
1
answer
273
views
1
answer
Calculating effective coverage/callable genome for variant calling from a bam file
genome variant-calling bam bigwig coverage written 8 months ago by Rubal • 310 • updated 8 months ago by Pierre Lindenbaum ♦ 127k
2
votes
0
answers
1.3k
views
0
answers
plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 2.7 years ago by ildem • 50 • updated 8 months ago by Biostar ♦♦ 20
0
votes
0
answers
216
views
0
answers
keep chromosome names in a bigwig file
rtracklayer bigwig import.bw written 8 months ago by Assa Yeroslaviz • 1.3k
18
votes
3
answers
24k
views
10 follow
3
answers
Any Method Of Converting Bigwig File Format Into Bed Format?
bed bigwig written 6.9 years ago by samwise.techno • 30 • updated 9 months ago by Samir • 180
0
votes
0
answers
226
views
0
answers
Overlapping Bedgraph - Microarray ChIP to BigWig for Clustering analysis
bedgraph chip bigwig microarray heatmap written 9 months ago by Hushus • 20
3
votes
1
answer
374
views
1
answer
How to tell if a BigWig file is 1-based or 0-based?
bigwig coordinate systems written 9 months ago by i.sudbery ♦ 7.3k • updated 9 months ago by Alex Reynolds ♦ 29k
0
votes
0
answers
236
views
0
answers
Loading bigiwg into an an array in javascript?
bigwig javascript written 10 months ago by endrebak • 810
6
votes
3
answers
433
views
3
answers
How to zoom out to whole genome view in UCSC browser?
ucsc bigwig browser written 12 months ago by msimmer92 • 250
0
votes
0
answers
604
views
0
answers
MACS2: Missing Peaks in Bed file but Present in Bedgraph/Bigwig?
bed macs2 chip-seq bigwig allele-specific written 10 months ago by Ankit • 130
13
votes
1
answer
13k
views
5 follow
1
answer
Converstion of BED with scores into bigWig
bed bigwig conversion scores written 4.7 years ago by Leszek ♦ 4.0k • updated 11 months ago by msimmer92 • 250
3
votes
1
answer
840
views
1
answer
converting Bed to Wig
overlap bed wig bigwig rtracklayer written 11 months ago by rahel14350 • 30 • updated 11 months ago by Alex Reynolds ♦ 29k
1
vote
1
answer
811
views
1
answer
Problems when exporting GRanges file as bigwig after hg38 to hg19 lift over using rtracklayer and annotation hub
R lift over bigwig granges rtracklayer written 11 months ago by camerond • 150 • updated 11 months ago by benformatics • 1.5k
15
votes
3
answers
13k
views
13 follow
3
answers
Normalized Bigwig Files
bigwig written 7.1 years ago by vj • 420 • updated 12 months ago by sztankatt • 0
2
votes
2
answers
675
views
2
answers
a webserver for the bigwig files
bigwig written 13 months ago by Bogdan • 970
0
votes
0
answers
400
views
0
answers
Count matrix showing different results than UCSC tracks
mm10 featurecounts bigwig bam ucsc written 13 months ago by raquelgarza95 • 50
5
votes
1
answer
2.5k
views
1
answer
From BAM to BAI to BIGWIG
bigwig index samtools bai bamcoverage written 13 months ago by raquelgarza95 • 50 • updated 13 months ago by h.mon ♦ 29k
11
votes
2
answers
4.1k
views
8 follow
2
answers
smoothing or binning bigWig file
bigwig written 3.3 years ago by igor ♦ 9.9k • updated 14 months ago by keller.mckowen • 10
5
votes
1
answer
795
views
1
answer
Per-base coverage to bedgraph or bigwig
bedtools bigwig bam coverage written 14 months ago by pyKey • 50
6
votes
1
answer
12k
views
1
answer
bigwig to peak
peak chip-seq bigwig written 5.7 years ago by Nicolas Rosewick ♦ 8.7k • updated 14 months ago by liruiradiant • 10
13
votes
3
answers
4.1k
views
3
answers
How to extract bigWig signal for a given bed file?
bigwig written 3.5 years ago by Bioradical • 60 • updated 15 months ago by chechu086 • 0
3
votes
1
answer
810
views
1
answer
How to create BigWig files with normalised signal using ChIP-seq and Input?
chip-seq bigwig written 15 months ago by biostart • 340 • updated 15 months ago by Devon Ryan ♦ 94k
2
votes
1
answer
1.4k
views
1
answer
Bigwig format and operation
bigwig chip-seq atac-seq written 15 months ago by oriolebaltimore • 130
4
votes
4
answers
2.5k
views
6 follow
4
answers
bigWig to bed for regions above/below threshold
bed bigwig written 2.4 years ago by skanterakis • 110 • updated 15 months ago by oriolebaltimore • 130
4
votes
1
answer
450
views
1
answer
Error when running Ensembl VEP: "bigWigToWig does not seem to be in your path"
ensembl ngs vep snp bigwig written 17 months ago by claudiadast • 0 • updated 16 months ago by Biostar ♦♦ 20
<prev • 103 results • page 1 of 4 • next >
Recent Votes
Recent Locations • All »
  • India, 2 minutes ago
  • University of Barcelona, 5 minutes ago
Recent Awards • All »
Recent Replies
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 904 users visited in the last hour