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<prev • 114 results • page 1 of 4 • next >
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Visualizing a bigwig ChIP-seq file over a region determined by a bed ChIP-seq file
bed sequencing correlation chip-seq bigwig written 29 days ago by topalsalih • 0
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217
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1
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How to normalize ChIPseq and RNAseq. Especially for bam file.
chip-seq bigwig rna-seq bw written 8 weeks ago by feng920308 • 0 • updated 8 weeks ago by ATpoint ♦ 40k
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Normalizing Bigwig values
normalization ngs bam bigwig written 11 weeks ago by hkitano • 0 • updated 11 weeks ago by jared.andrews07 ♦ 7.5k
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115
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Size difference BigWig vs. BedGraph files
bigwigtobedgraph bigwig written 12 weeks ago by robbenstijn • 0 • updated 12 weeks ago by Pierre Lindenbaum ♦ 131k
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ucsc bigWigToBedGraph tool error
local galaxy bigwig ucsc written 12 weeks ago by robbenstijn • 0
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Galaxy - bigWigToBedGraph: command not found
bigwigtobedgraph galaxy bigwig written 12 weeks ago by robbenstijn • 0
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377
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ATAC-seq coverage tracks using bamCoverage from Deeptools
deeptools bigwig atac-seq bamcoverage written 4 months ago by mickey_95 • 10
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220
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Intersection of bigwig and bed files
bed ucsc bigwig atac-seq peak calling written 5 months ago by palabari • 10
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150
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Retrieve coordinate for maximum value in a region using a bigwig file
peak bigwig summit written 5 months ago by am2622 • 0 • updated 5 months ago by Pierre Lindenbaum ♦ 131k
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165
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Retrieving individual cells from scRNA-seq bigWig files?
scrna-seq bigwig single cell rna-seq written 6 months ago by txema.heredia • 0 • updated 6 months ago by geek_y ♦ 11k
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200
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Bigwig circular plot
plotting java bigwig tool javascript written 6 months ago by abedkurdi10 • 30 • updated 6 months ago by Pierre Lindenbaum ♦ 131k
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536
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Average bigwig files (not sum)
chip-seq bigwig written 6 months ago by srhic • 20 • updated 6 months ago by ATpoint ♦ 40k
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error while reading bigwig files in computeMatrix (deeptools)
deeptools bigwig coverage computematrix written 21 months ago by Lila M • 860 • updated 7 months ago by Biostar ♦♦ 20
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ATAC-seq data and deepTools: Small detail with impact on output
atacseq deeptools readlength bigwig forum written 8 months ago by gable_works • 40 • updated 8 months ago by ATpoint ♦ 40k
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variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 2.1 years ago by m98 • 260 • updated 8 months ago by Biostar ♦♦ 20
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Whole-genome percentile values in bigWig files
chip-seq wiggle bigwig statistics written 10 months ago by rachel • 30 • updated 10 months ago by Alex Reynolds ♦ 31k
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Count matrix from bigwig files - Application
seq gene expression bigwig python written 12 months ago by pyKey • 50
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Calculating effective coverage/callable genome for variant calling from a bam file
genome variant-calling bam bigwig coverage written 15 months ago by Rubal • 330 • updated 15 months ago by Pierre Lindenbaum ♦ 131k
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plotProfile with mean of bigwig files
plotprofile deeptools average bigwig mean written 3.3 years ago by ildem • 50 • updated 15 months ago by Biostar ♦♦ 20
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keep chromosome names in a bigwig file
rtracklayer bigwig import.bw written 15 months ago by Assa Yeroslaviz • 1.4k
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10 follow
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Any Method Of Converting Bigwig File Format Into Bed Format?
bed bigwig written 7.4 years ago by samwise.techno • 40 • updated 16 months ago by Samir • 180
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341
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Overlapping Bedgraph - Microarray ChIP to BigWig for Clustering analysis
bedgraph chip bigwig microarray heatmap written 16 months ago by Hushus • 20
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716
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How to tell if a BigWig file is 1-based or 0-based?
bigwig coordinate systems written 16 months ago by i.sudbery ♦ 9.4k • updated 16 months ago by Alex Reynolds ♦ 31k
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Loading bigiwg into an an array in javascript?
bigwig javascript written 16 months ago by endrebak • 840
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3
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How to zoom out to whole genome view in UCSC browser?
ucsc bigwig browser written 19 months ago by msimmer92 • 260
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MACS2: Missing Peaks in Bed file but Present in Bedgraph/Bigwig?
bed macs2 chip-seq bigwig allele-specific written 17 months ago by Ankit • 140
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6 follow
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Converstion of BED with scores into bigWig
bed bigwig conversion scores written 5.3 years ago by Leszek ♦ 4.1k • updated 17 months ago by msimmer92 • 260
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converting Bed to Wig
overlap bed wig bigwig rtracklayer written 18 months ago by rahel14350 • 30 • updated 18 months ago by Alex Reynolds ♦ 31k
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Problems when exporting GRanges file as bigwig after hg38 to hg19 lift over using rtracklayer and annotation hub
R lift over bigwig granges rtracklayer written 18 months ago by camerond • 150 • updated 18 months ago by benformatics • 2.0k
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13 follow
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Normalized Bigwig Files
bigwig written 7.6 years ago by vj • 450 • updated 18 months ago by sztankatt • 0
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