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<prev • 92 results • page 1 of 4 • next >
5
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102
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How to zoom out to whole genome view in UCSC browser?
ucsc bigwig browser written 4 weeks ago by msimmer92 • 150 • updated 11 days ago by Luis Nassar • 80
1
vote
1
answer
77
views
1
answer
Problems when exporting GRanges file as bigwig after hg38 to hg19 lift over using rtracklayer and annotation hub
R lift over bigwig granges rtracklayer written 12 days ago by camerond • 20 • updated 11 days ago by benformatics • 700
13
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3
answers
11k
views
13 follow
3
answers
Normalized Bigwig Files
bigwig written 6.1 years ago by vj • 390 • updated 20 days ago by sztankatt • 0
2
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2
answers
178
views
2
answers
a webserver for the bigwig files
bigwig written 9 weeks ago by Bogdan • 750
0
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0
answers
188
views
0
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Count matrix showing different results than UCSC tracks
mm10 featurecounts bigwig bam ucsc written 8 weeks ago by raquelgarza95 • 40
5
votes
1
answer
199
views
1
answer
From BAM to BAI to BIGWIG
bigwig index samtools bai bamcoverage written 8 weeks ago by raquelgarza95 • 40 • updated 8 weeks ago by h.mon ♦ 24k
8
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3
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2.7k
views
7 follow
3
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smoothing or binning bigWig file
bigwig written 2.4 years ago by igor ♦ 7.6k • updated 11 weeks ago by keller.mckowen • 10
5
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1
answer
198
views
1
answer
Per-base coverage to bedgraph or bigwig
bedtools bigwig bam coverage written 12 weeks ago by pyKey • 40
3
votes
1
answer
229
views
1
answer
error while reading bigwig files in computeMatrix (deeptools)
deeptools bigwig coverage computematrix written 12 weeks ago by Lila M • 470 • updated 12 weeks ago by Devon Ryan ♦ 89k
6
votes
1
answer
7.3k
views
1
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bigwig to peak
peak chip-seq bigwig written 4.8 years ago by Nicolas Rosewick ♦ 7.5k • updated 3 months ago by liruiradiant • 10
12
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3
answers
2.8k
views
3
answers
How to extract bigWig signal for a given bed file?
bigwig written 2.5 years ago by Bioradical • 50 • updated 3 months ago by chechu086 • 0
3
votes
1
answer
290
views
1
answer
How to create BigWig files with normalised signal using ChIP-seq and Input?
chip-seq bigwig written 3 months ago by biostart • 290 • updated 3 months ago by Devon Ryan ♦ 89k
2
votes
1
answer
378
views
1
answer
Bigwig format and operation
bigwig chip-seq atac-seq written 4 months ago by oriolebaltimore • 60
4
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4
answers
1.1k
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6 follow
4
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bigWig to bed for regions above/below threshold
bed bigwig written 17 months ago by skanterakis • 100 • updated 4 months ago by oriolebaltimore • 60
4
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1
answer
287
views
1
answer
Error when running Ensembl VEP: "bigWigToWig does not seem to be in your path"
ensembl ngs vep snp bigwig written 6 months ago by claudiadast • 0 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
answers
186
views
0
answers
How to generate bigwig file from paired end reads that overlap
paired-end clip bigwig rna-seq small rnas written 5 months ago by racrna • 0
1
vote
0
answers
295
views
0
answers
Reformating bedGraph files in shell script
bedgraph ucsc bigwig chr awk written 7 months ago by m93 • 150 • updated 5 months ago by Biostar ♦♦ 20
0
votes
0
answers
951
views
0
answers
Rtracklayer: Converting rlelist (Coverage) to bigwig
rtracklayer bigwig coverage written 2.6 years ago by datascientist28 • 380 • updated 5 months ago by Biostar ♦♦ 20
7
votes
3
answers
1.6k
views
3
answers
BigWig library for Java
bedgraph java bigwig written 4.4 years ago by bow • 780 • updated 6 months ago by holgerbrandl • 30
0
votes
0
answers
280
views
0
answers
Heatmap using publicly available Chip-Seq data
bigbed chip-seq bigwig blueprint heatmap written 6 months ago by bk11 • 30
1
vote
1
answer
208
views
1
answer
Testing bigWig file integrity
bigwig integrity written 6 months ago by Alex Reynolds ♦ 28k • updated 6 months ago by Devon Ryan ♦ 89k
3
votes
1
answer
269
views
1
answer
variableStep vs fixedStep for range formats
bedgraph ucsc bigwig formats range written 7 months ago by m93 • 150 • updated 7 months ago by RamRS ♦ 21k
5
votes
1
answer
464
views
1
answer
Output bedGraph from genomeCoverageBed is missing "chr"
bedgraph bigwig genomecoveragebed rna-seq ucsc written 7 months ago by m93 • 150 • updated 7 months ago by RamRS ♦ 21k
0
votes
0
answers
275
views
0
answers
bwtool stalled liftover
bigwig liftover bwtool written 7 months ago by rbronste • 240
7
votes
3
answers
464
views
3
answers
Normalising RNA-seq samples from bam files for UCSC Genome browser visualization
bam bigwig rna-seq ucsc written 8 months ago by m93 • 150 • updated 8 months ago by Ian ♦ 5.4k
3
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1
answer
555
views
1
answer
Different bigwig file sizes between BedgraphToBigwig and bamCoverage
bamcoverage ucsc bigwig deeptools bedgraphtobigwig written 8 months ago by m93 • 150
1
vote
1
answer
209
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1
answer
Is possible to quantify the RNAPOLII levels on all the annotated genes using biwgiw files?
annotation rnapol quantification bigwig written 8 months ago by Lila M • 470 • updated 8 months ago by venu ♦ 6.1k
13
votes
1
answer
2.7k
views
1
answer
Tool: Command-Line Software For Bigwig Data
bigwig tool written 5.5 years ago by andypohl • 90 • updated 8 months ago by Shicheng Guo • 7.4k
0
votes
0
answers
391
views
0
answers
Is there are any Python library for read bigWig file on Windows?
python windows bigwig written 9 months ago by flipflappers • 0
4
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2
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390
views
5 follow
2
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BigWig from ensembl assembly to UCSC session
ensembl bigwig ucsc written 10 months ago by Dataminer • 2.6k • updated 10 months ago by Devon Ryan ♦ 89k
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